Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0245
         (695 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY094716-1|AAM11069.1| 1688|Drosophila melanogaster GH16393p pro...    29   8.0  
AE014297-2048|AAF55199.3| 1537|Drosophila melanogaster CG14869-P...    29   8.0  
AE014297-2047|AAS65157.1| 1688|Drosophila melanogaster CG14869-P...    29   8.0  

>AY094716-1|AAM11069.1| 1688|Drosophila melanogaster GH16393p
           protein.
          Length = 1688

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -2

Query: 436 TFAHSNG---TDNHDRSDKSEDYNTKQTKKKILNII 338
           T AH  G     NHD  DK   Y T+Q   K+L+I+
Sbjct: 587 TMAHELGHILNMNHDDDDKCMPYVTRQNNNKVLHIM 622


>AE014297-2048|AAF55199.3| 1537|Drosophila melanogaster CG14869-PA,
           isoform A protein.
          Length = 1537

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -2

Query: 436 TFAHSNG---TDNHDRSDKSEDYNTKQTKKKILNII 338
           T AH  G     NHD  DK   Y T+Q   K+L+I+
Sbjct: 436 TMAHELGHILNMNHDDDDKCMPYVTRQNNNKVLHIM 471


>AE014297-2047|AAS65157.1| 1688|Drosophila melanogaster CG14869-PB,
           isoform B protein.
          Length = 1688

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -2

Query: 436 TFAHSNG---TDNHDRSDKSEDYNTKQTKKKILNII 338
           T AH  G     NHD  DK   Y T+Q   K+L+I+
Sbjct: 587 TMAHELGHILNMNHDDDDKCMPYVTRQNNNKVLHIM 622


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,002,404
Number of Sequences: 53049
Number of extensions: 603424
Number of successful extensions: 1108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3046624548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)