Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0245
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68161-8|CAH60763.1|  625|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z68161-5|CAA92299.2|  764|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z68161-4|CAD89735.1|  781|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AY185494-1|AAO26317.1|  764|Caenorhabditis elegans poly ADP-ribo...    28   7.3  
AY185493-1|AAO26316.1|  781|Caenorhabditis elegans poly ADP-ribo...    28   7.3  
U50072-5|AAA93452.2|  351|Caenorhabditis elegans Pax (paired box...    27   9.7  

>Z68161-8|CAH60763.1|  625|Caenorhabditis elegans Hypothetical
           protein F20C5.1c protein.
          Length = 625

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = -1

Query: 686 MIASGCTVNMDELCSGGGP---V*C*KQDERIKILHYTWDMLFSILNVEGCP 540
           +IA+G        CS G P     C K  ER+K    T  MLFS++N  G P
Sbjct: 540 VIAAGVADRPLHFCSFGEPELAAKCKKIIERMKQKDVTLGMLFSMINNTGLP 591


>Z68161-5|CAA92299.2|  764|Caenorhabditis elegans Hypothetical
           protein F20C5.1b protein.
          Length = 764

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = -1

Query: 686 MIASGCTVNMDELCSGGGP---V*C*KQDERIKILHYTWDMLFSILNVEGCP 540
           +IA+G        CS G P     C K  ER+K    T  MLFS++N  G P
Sbjct: 679 VIAAGVADRPLHFCSFGEPELAAKCKKIIERMKQKDVTLGMLFSMINNTGLP 730


>Z68161-4|CAD89735.1|  781|Caenorhabditis elegans Hypothetical
           protein F20C5.1a protein.
          Length = 781

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = -1

Query: 686 MIASGCTVNMDELCSGGGP---V*C*KQDERIKILHYTWDMLFSILNVEGCP 540
           +IA+G        CS G P     C K  ER+K    T  MLFS++N  G P
Sbjct: 696 VIAAGVADRPLHFCSFGEPELAAKCKKIIERMKQKDVTLGMLFSMINNTGLP 747


>AY185494-1|AAO26317.1|  764|Caenorhabditis elegans poly ADP-ribose
           metabolism enzyme-3 short form protein.
          Length = 764

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = -1

Query: 686 MIASGCTVNMDELCSGGGP---V*C*KQDERIKILHYTWDMLFSILNVEGCP 540
           +IA+G        CS G P     C K  ER+K    T  MLFS++N  G P
Sbjct: 679 VIAAGVADRPLHFCSFGEPELAAKCKKIIERMKQKDVTLGMLFSMINNTGLP 730


>AY185493-1|AAO26316.1|  781|Caenorhabditis elegans poly ADP-ribose
           metabolism enzyme-3 long form protein.
          Length = 781

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = -1

Query: 686 MIASGCTVNMDELCSGGGP---V*C*KQDERIKILHYTWDMLFSILNVEGCP 540
           +IA+G        CS G P     C K  ER+K    T  MLFS++N  G P
Sbjct: 696 VIAAGVADRPLHFCSFGEPELAAKCKKIIERMKQKDVTLGMLFSMINNTGLP 747


>U50072-5|AAA93452.2|  351|Caenorhabditis elegans Pax (paired box)
           transcriptionfactor protein 2 protein.
          Length = 351

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +1

Query: 373 YCNLHSYQSDRGCQYHCC 426
           YCNL  Y   R C   CC
Sbjct: 18  YCNLQQYHDSRVCLLKCC 35


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,486,956
Number of Sequences: 27780
Number of extensions: 316335
Number of successful extensions: 629
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)