Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0244
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    35   0.012
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    31   0.20 
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    27   1.8  
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha...    27   3.2  
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p...    27   3.2  
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    26   5.6  
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb...    25   7.4  
SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|c...    25   9.7  

>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 34.7 bits (76), Expect = 0.012
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +1

Query: 352 CHRCQLYGHSARNCNARPRCVKC-LDDHATTDCSRVKETATEPPSCVLCRKQG 507
           C+ C  YGH AR+C    +C  C    H + +C    + A++   C  C + G
Sbjct: 118 CYACGSYGHQARDCTMGVKCYSCGKIGHRSFEC----QQASDGQLCYKCNQPG 166



 Score = 31.5 bits (68), Expect = 0.11
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
 Frame = +1

Query: 343 PG-QCHRCQLYGHSARNCNARPRCVKC-LDDHATTDCSRVKETATEPPSCVLCRKQG 507
           PG +C+ C   GH AR C     C  C    H  ++C+  ++  T    C  C   G
Sbjct: 15  PGPRCYNCGENGHQARECTKGSICYNCNQTGHKASECTEPQQEKT----CYACGTAG 67


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
 Frame = +1

Query: 352 CHRCQLYGHSARNCNARPRCVKC--LDDHATTDCSRVKETAT------EPPSCVLCRKQG 507
           CH C+  GH +++C     C  C  +DDH +  C   K+             C   RK+G
Sbjct: 89  CHNCKGNGHISKDC-PHVLCTTCGAIDDHISVRCPWTKKCMNCGLLGHIAARCSEPRKRG 147

Query: 508 PR 513
           PR
Sbjct: 148 PR 149


>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 561 RLPGASVEPWGIHGS 517
           RLPG + E WG HG+
Sbjct: 142 RLPGCTAESWGYHGN 156


>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 203

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 409 NAVARCSYARSGHRVGNGGTARECRVCRGPLR 314
           +AVA C       R+G+ GT R   V   PLR
Sbjct: 113 DAVAACGPREDSTRIGSAGTVRRQAVDVSPLR 144


>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 409 NAVARCSYARSGHRVGNGGTARECRVCRGPLR 314
           +AVA C       R+G+ GT R   V   PLR
Sbjct: 113 DAVAACGPREDSTRIGSAGTVRRQAVDVSPLR 144


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 995

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 246  LEAHRRARKLPHVSAPCAPIGGHRRG 323
            L+ H    K+  +  PCAPIG +  G
Sbjct: 929  LQVHEPLSKITIIGLPCAPIGVYFEG 954


>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +1

Query: 346 GQCHRCQLYGHSARNCNARPR 408
           G C  C    H  ++C  RPR
Sbjct: 111 GACENCGAMSHKVKDCMERPR 131


>SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -3

Query: 627 PVRKPVSARGAPKSLGQRF*GARLPGASVEPWGIHGSWPWS 505
           P R+PVS+     S+G  F G  +   +++        PWS
Sbjct: 71  PARRPVSSNSWLDSIGAYFVGIDMTARNIQNEAKKKGLPWS 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,502,652
Number of Sequences: 5004
Number of extensions: 48878
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)