Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0244
(662 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0817 - 20792817-20793360,20794061-20794156,20795193-20795296 35 0.066
04_04_0752 - 27791126-27791167,27791792-27791863,27792771-277928... 35 0.066
11_06_0690 + 26303733-26306540 34 0.088
09_06_0087 + 20771329-20771450,20771462-20771771,20771893-207726... 34 0.12
08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614 33 0.27
02_03_0076 - 14861337-14861974,14862008-14862119,14862150-14863580 33 0.27
04_01_0453 + 5869627-5870232,5870383-5870897,5870964-5871600 31 0.62
05_03_0201 - 9762563-9762843,9763037-9763919,9763988-9764036,980... 31 0.82
05_01_0084 + 562119-562411,562854-562902,563151-563162,563194-56... 31 0.82
11_02_0147 - 8791117-8792502 31 1.1
10_02_0060 - 4808506-4808535,4808564-4809588,4810125-4810292,481... 30 1.4
09_02_0546 - 10454404-10455687 30 1.9
05_01_0148 - 985745-986180,986290-986385,986498-986694,986824-98... 30 1.9
03_02_0609 - 9823120-9823573,9823903-9824102,9824240-9824335,982... 30 1.9
09_04_0521 - 18297343-18297840 29 2.5
08_01_0300 + 2427524-2427827,2429066-2429274,2429512-2430150 29 2.5
12_02_0916 - 24271151-24271894 29 3.3
10_08_1032 - 22432739-22433218,22433231-22433848 29 3.3
06_01_1013 - 7931756-7935109 29 3.3
01_06_1173 - 35123626-35123635,35123722-35124074 29 3.3
10_02_0188 - 6473353-6473432,6473619-6474816 29 4.4
08_01_0413 - 3679887-3681254 29 4.4
06_03_1076 + 27409107-27409204,27409731-27409835,27409915-274100... 29 4.4
05_04_0104 + 18021671-18021909,18022102-18022282,18022473-180225... 29 4.4
05_03_0635 - 16446805-16447716 29 4.4
04_04_0396 + 24915880-24916222,24916318-24916577,24916689-249167... 29 4.4
04_03_0716 + 18995712-18995904,18996511-18996614,18997280-189973... 29 4.4
01_01_0419 - 3146851-3147339,3148428-3148663,3148847-3149793,315... 29 4.4
01_07_0238 + 42209407-42209964,42210039-42210561,42212577-422126... 28 5.8
12_02_0814 - 23410278-23411854,23411933-23412166,23412688-234127... 28 7.6
12_01_0093 + 732276-732619,732722-732731 28 7.6
08_02_1050 + 23949828-23949981,23950083-23950534,23951599-239516... 28 7.6
07_01_0716 + 5472618-5472818,5472943-5472985,5473672-5473761,547... 28 7.6
03_06_0745 + 35937173-35938256,35938994-35939721 28 7.6
03_06_0587 - 34921535-34922041,34922579-34922689 28 7.6
01_06_1507 - 37838645-37839311,37839393-37839499,37839588-378396... 28 7.6
>10_08_0817 - 20792817-20793360,20794061-20794156,20795193-20795296
Length = 247
Score = 34.7 bits (76), Expect = 0.066
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 9/58 (15%)
Frame = +1
Query: 352 CHRCQLYGHSARNCNARPRCVKC-LDDHATTDCSR---VKETATEPP-----SCVLCR 498
C+ C+ GH ARNC P C C + H +C + + E PP S V+CR
Sbjct: 143 CNNCRKSGHLARNCPNEPVCNLCNVSGHLARECPKSDAINERGGPPPFRGGYSDVVCR 200
Score = 31.5 bits (68), Expect = 0.62
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +1
Query: 352 CHRCQLYGHSARNCNARPRCVKCLD-DHATTDC 447
CH C L GH A C+++ C C + H C
Sbjct: 60 CHACGLPGHIAAECSSKDLCWNCKEPGHMANSC 92
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 9/53 (16%)
Frame = +1
Query: 319 EAPYKRGT---PGQ-----CHRCQLYGHSARNCNARPRCVKC-LDDHATTDCS 450
+APY+R + P + C+ C+ GH AR+C C C L H +CS
Sbjct: 22 DAPYRRDSRRGPSRFPNDLCNNCKRPGHFARDCPNVALCHACGLPGHIAAECS 74
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 8/62 (12%)
Frame = +1
Query: 346 GQCHRCQLYGHSARNCNARPR-------CVKCL-DDHATTDCSRVKETATEPPSCVLCRK 501
G C C GH AR C+A P C C H +C+ K +C CRK
Sbjct: 96 GICRNCGKSGHIARECSAPPMLPGEMRLCSNCYKPGHLAAECTNEK-------ACNNCRK 148
Query: 502 QG 507
G
Sbjct: 149 SG 150
>04_04_0752 -
27791126-27791167,27791792-27791863,27792771-27792855,
27792971-27793236,27794117-27794301,27794925-27795018,
27795193-27795284,27795401-27795539,27796101-27796385
Length = 419
Score = 34.7 bits (76), Expect = 0.066
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Frame = +1
Query: 352 CHRCQLYGHSARNC------NARPRCVKCLDD-HATTDCSR-VKETATEPPSCVLCRKQG 507
C C+ GHS +NC N + C C + H+ + C + ++ T+ SC +C++QG
Sbjct: 97 CLLCRQRGHSLKNCPDKNDENLKKFCYNCGESGHSLSKCPKPIENGGTKFASCFVCKQQG 156
>11_06_0690 + 26303733-26306540
Length = 935
Score = 34.3 bits (75), Expect = 0.088
Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
Frame = +1
Query: 250 KPTGGQENCLMSPHRVRLSGVTVEAPYKRGTPGQCHRCQLYGHSARNCNARPRCVKC-LD 426
+P+G P R R P R G+C C GH +C PRC +C
Sbjct: 68 QPSGRSTTAFTLPERAR--------PIPRWLQGRCFCCLGLGHLKADCKGAPRCYRCWFS 119
Query: 427 DHATTDCSRVKETATEP 477
+ DC + ++ P
Sbjct: 120 GYLERDCKFDRGPSSRP 136
>09_06_0087 +
20771329-20771450,20771462-20771771,20771893-20772672,
20772854-20774002
Length = 786
Score = 33.9 bits (74), Expect = 0.12
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +1
Query: 325 PYKRGTPGQCHRCQLYGHSARNCNARPRCVKC-LDDHATTDCSRVKETATEP 477
P R G+C RC GH +C+ P C +C H +C +V AT P
Sbjct: 62 PIPRWLHGRCFRCLGLGHLKASCSQPPTCYRCWYPGHIERNC-KVDIDATLP 112
>08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614
Length = 248
Score = 32.7 bits (71), Expect = 0.27
Identities = 34/113 (30%), Positives = 43/113 (38%), Gaps = 1/113 (0%)
Frame = +2
Query: 44 PPQGTHRVSYLCAPGGA*TPRRNTRSPQRARRRAN*E*PGRSVLPRHKCAPDAQ-RARXI 220
P Q ++L A P R+P RA + + PGR PR A Q A
Sbjct: 117 PRQPGRLPAHLTVASRAAQPASRLRAPARASPSPDAQTPGRRSRPRRCLAGRPQATAGSP 176
Query: 221 RVRYGARSTRSPPEGKKIASCLRTVCAYRGSP*RPPTNAALPGSATVANSMAT 379
R AR R+ P + S L A R RPP A G + +N AT
Sbjct: 177 AARLAARRLRTSPPPRLRTSRLAGAVAPRAR--RPPARLAAFGLPSSSNITAT 227
>02_03_0076 - 14861337-14861974,14862008-14862119,14862150-14863580
Length = 726
Score = 32.7 bits (71), Expect = 0.27
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 352 CHRCQLYGHSARNCNARPRCVKCLD-DHATTDCSRVKETATEP 477
C RC GH A NC+ RC CL+ H + C+ A +P
Sbjct: 230 CVRCLDKGHIASNCSGPVRCHSCLEAGHMSCFCATRPTKAHQP 272
>04_01_0453 + 5869627-5870232,5870383-5870897,5870964-5871600
Length = 585
Score = 31.5 bits (68), Expect = 0.62
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = +1
Query: 352 CHRCQLYGHSARNCNARPRCVKC-LDDHATTDC----SRVKETA 468
C RC GH ++C+++ C C +DH T C S VK TA
Sbjct: 274 CFRCLTKGHIMQDCSSKFYCEICESEDHIATRCPIFRSNVKPTA 317
>05_03_0201 -
9762563-9762843,9763037-9763919,9763988-9764036,
9806710-9807680
Length = 727
Score = 31.1 bits (67), Expect = 0.82
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Frame = +1
Query: 352 CHRCQLYGHSARNCNARPRCVKCLDDHATTDC--SRV-----KETATEPPSC----VLCR 498
C RC GH A +C CV C +DH + C SR+ + T P C +L +
Sbjct: 193 CSRCGEIGHVASSC--ATTCVHCEEDHPSDRCPTSRITCFFCEGTDHVPKDCQFSFLLTK 250
Query: 499 KQGPRPTTVDAPRLHGSARQ 558
K +P + + R G+ +
Sbjct: 251 KMANQPASSNGERHQGNTNR 270
>05_01_0084 + 562119-562411,562854-562902,563151-563162,563194-563327,
563716-566278
Length = 1016
Score = 31.1 bits (67), Expect = 0.82
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Frame = +1
Query: 349 QCHRCQLYGHSARNCNARP----RCVKCLD-DHATTDCSRVKETATEPPSCVLCRKQG 507
+C++C+ GH AR+C + C KC H + DC V+ T C C++ G
Sbjct: 925 ECYKCKQPGHYARDCPGQSTGGLECFKCKQPGHFSRDCP-VQSTGGS--ECFKCKQPG 979
>11_02_0147 - 8791117-8792502
Length = 461
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +1
Query: 352 CHRCQLYGHSARNCNARPRC-VKCLDDHATTDCSR 453
C +C+ Y H +R+C C + + H T DC R
Sbjct: 119 CSKCRSYSHLSRDCKLSVFCIIFAKETHRTEDCIR 153
>10_02_0060 -
4808506-4808535,4808564-4809588,4810125-4810292,
4811202-4811652
Length = 557
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 156 DLVGQSYPVISVHRMHSGRXKFAYDMVLVALEAHRRARKLPH 281
DLV S V +H + + R +L +L RRAR++PH
Sbjct: 37 DLVHPSLGVRKLHAVVADRVSLVPQQILASLARPRRARRVPH 78
>09_02_0546 - 10454404-10455687
Length = 427
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 352 CHRCQLYGHSARNCNARPRCVKCLDDHATTDC 447
C RC GH A +C + CV C +DH C
Sbjct: 203 CSRCGEIGHVASSCAS--TCVHCEEDHPPDRC 232
>05_01_0148 -
985745-986180,986290-986385,986498-986694,986824-986919,
987020-987059,987751-987857
Length = 323
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Frame = +1
Query: 334 RGTP---GQCHRCQLYGHSARNCNA---RPRCVKCLD-DHATTDC 447
RG P G+C C + GH AR+C A + +C +C + H +C
Sbjct: 95 RGPPPGTGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 139
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 349 QCHRCQLYGHSARNCNARPR 408
+C+RC GH RNC PR
Sbjct: 125 KCYRCGERGHIERNCQNSPR 144
>03_02_0609 -
9823120-9823573,9823903-9824102,9824240-9824335,
9824454-9824567,9824711-9824774,9825206-9825312
Length = 344
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Frame = +1
Query: 334 RGTP---GQCHRCQLYGHSARNCNA---RPRCVKCLD-DHATTDC 447
RG P G+C C + GH AR+C A + +C +C + H +C
Sbjct: 142 RGPPPGTGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 186
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/69 (26%), Positives = 29/69 (42%)
Frame = +1
Query: 349 QCHRCQLYGHSARNCNARPRCVKCLDDHATTDCSRVKETATEPPSCVLCRKQGPRPTTVD 528
+C+RC GH RNC PR + + + R + + S L + PR +
Sbjct: 172 KCYRCGERGHIERNCQNSPRNLSRSRSRSLSGSPRGRRDRDDRRSRSLSYSRSPRRSI-- 229
Query: 529 APRLHGSAR 555
+P +G R
Sbjct: 230 SPAANGKER 238
>09_04_0521 - 18297343-18297840
Length = 165
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -2
Query: 400 ARCSYARSGHRVGNGGTARECRVC 329
AR AR GHR GG +CRVC
Sbjct: 83 ARFRPARFGHRRCGGGATADCRVC 106
>08_01_0300 + 2427524-2427827,2429066-2429274,2429512-2430150
Length = 383
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 343 PGQCHRCQLYGHSARNCNAR 402
P +C +C +GH+AR C AR
Sbjct: 19 PRRCSQCGHHGHNARTCTAR 38
>12_02_0916 - 24271151-24271894
Length = 247
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -2
Query: 424 LSTSRNAVARCSYARSGHRVGNGGTARECRVC 329
+ T A+A S + SG G GG A EC VC
Sbjct: 129 VETKPAAIATPSSSASGVSGGGGGRAHECNVC 160
>10_08_1032 - 22432739-22433218,22433231-22433848
Length = 365
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Frame = +1
Query: 352 CHRCQLYGHSARNCNARPRCVKCLDDHATTDCSR---VKETATEPP 480
C+ C H ARNCN P ++ D VK T T+ P
Sbjct: 271 CYHCGSKKHWARNCNTEPHLIEMYQDWKKKQGPENHFVKVTGTDTP 316
>06_01_1013 - 7931756-7935109
Length = 1117
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/20 (65%), Positives = 13/20 (65%)
Frame = +3
Query: 306 GGHRRGPLQTRHSRAVPPLP 365
GG RRGP Q R S A PP P
Sbjct: 81 GGQRRGPPQERPSAAPPPPP 100
>01_06_1173 - 35123626-35123635,35123722-35124074
Length = 120
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 350 CPGVPRL*GASTVTPDRRTRCGDMR 276
C G+ L A+ TPDRRT CG ++
Sbjct: 56 CGGIQSLLAAANNTPDRRTICGCLK 80
>10_02_0188 - 6473353-6473432,6473619-6474816
Length = 425
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 352 CHRCQLYGHSARNCNARPRCVKCLDDHATTDC 447
C RC GH A +C CV C +DH C
Sbjct: 193 CSRCGEIGHVASSC--ATICVHCEEDHPPDRC 222
>08_01_0413 - 3679887-3681254
Length = 455
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 285 SAPCAPIGGHRRGPLQTRHSRAVPPLP 365
SA A GG RRGP+ +PPLP
Sbjct: 6 SAAAAAGGGERRGPMDLNLYLGLPPLP 32
>06_03_1076 +
27409107-27409204,27409731-27409835,27409915-27410032,
27410180-27410230,27410328-27410419,27410558-27410657,
27411018-27411137,27411227-27411295,27411468-27411514,
27411597-27411652,27412293-27412333,27412570-27412675,
27413891-27414023,27414096-27414645
Length = 561
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +1
Query: 370 YGHSARNCNARPRCVKC-LDDHATTDCSRVKETATEPPSCVL 492
+ S RN N + C KC DH DC + E + PS VL
Sbjct: 325 FRQSKRNAN-KDGCFKCGAPDHIAKDCDQGTEQKNKGPSYVL 365
>05_04_0104 +
18021671-18021909,18022102-18022282,18022473-18022568,
18022632-18022672,18022761-18022833,18023036-18023749
Length = 447
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = -1
Query: 620 ESRFRRAGRRSLWASGFRGRVCRALPWSLGASTVVGRGPCLRQSTQLGGSVAVSLTREQS 441
++ R AG + + G+ R+ R L WS + V G C +GG A ++
Sbjct: 9 DAALREAGGGASFPGGWLRRLSRELRWSFVLAVVAVYGACQGVGDAVGGVTAGYYWKDVQ 68
Query: 440 VVA*SSKHFTQ 408
V S+ F Q
Sbjct: 69 RVQPSAAQFYQ 79
>05_03_0635 - 16446805-16447716
Length = 303
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +2
Query: 254 PPEGKKIASCLRTVCAYRGSP*RPPTNAAL--PGSATVANSMAT 379
PP K++ T +R P PPT+ +L PG+A A S +T
Sbjct: 179 PPPAKRLCVAPPTGVEHRAPPPDPPTSLSLSPPGAAAAAISAST 222
>04_04_0396 +
24915880-24916222,24916318-24916577,24916689-24916784,
24916889-24917059,24917262-24917975
Length = 527
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = -1
Query: 620 ESRFRRAGRRSLWASGFRGRVCRALPWSLGASTVVGRGPCLRQSTQLGGSVAVSLTREQS 441
++ R AG + + G+ R+ R L WS + V G C +GG A ++
Sbjct: 10 DAALREAGGGASFPGGWLRRLSRELHWSFVLAVVAVYGACQGVGDAVGGVAAGYYWKDVQ 69
Query: 440 VVA*SSKHFTQ 408
V S+ F Q
Sbjct: 70 RVQPSAAQFYQ 80
>04_03_0716 +
18995712-18995904,18996511-18996614,18997280-18997393,
18997819-18997824,18998041-18998097
Length = 157
Score = 28.7 bits (61), Expect = 4.4
Identities = 24/82 (29%), Positives = 32/82 (39%)
Frame = +2
Query: 164 RSVLPRHKCAPDAQRARXIRVRYGARSTRSPPEGKKIASCLRTVCAYRGSP*RPPTNAAL 343
R++ R PD RA A R+P + C C+ G P +PP A L
Sbjct: 5 RALALRSLLVPDHPRAAAAAAARPAAGRRAPRRRSRHLRC----CSGGGDPGQPPQEAVL 60
Query: 344 PGSATVANSMATPRVTATRDRV 409
+ VA S RV T + V
Sbjct: 61 EAISKVARSKG--RVALTTNMV 80
>01_01_0419 -
3146851-3147339,3148428-3148663,3148847-3149793,
3150258-3150356,3151128-3151501
Length = 714
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 349 QCHRCQLYGHSARNCNARPRCVKCLDDHATTD 444
+CHRC +GH A C+ + K + A D
Sbjct: 675 ECHRCGKFGHFADECDEPRKMTKAVVQLAIAD 706
>01_07_0238 +
42209407-42209964,42210039-42210561,42212577-42212665,
42212981-42213191,42213265-42213446,42213573-42213812,
42214691-42214878,42215230-42215323,42215407-42215463,
42215552-42215686,42216460-42216525,42216745-42216858,
42217849-42218010,42218093-42218221,42218323-42218424,
42219428-42219504,42219600-42219957
Length = 1094
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/76 (21%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Frame = +3
Query: 66 YHTYALQEERELRVVIRGVPKELDVEQIKNDLVGQSY---PVISVHRMHSGRXKF-AYDM 233
++ Y+L E+ +++ G+ +LD E ++ L+ Y +I + ++ + F +
Sbjct: 716 HNEYSLARLDEIMMLLHGIKADLDNEVLEGQLLCYQYLLVHMIKANEENTSKKAFLILNE 775
Query: 234 VLVALEAHRRARKLPH 281
++VAL++ + +R+L +
Sbjct: 776 LIVALKSKKESRRLAY 791
>12_02_0814 -
23410278-23411854,23411933-23412166,23412688-23412725,
23412872-23412948
Length = 641
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/49 (26%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Frame = +1
Query: 334 RGTPGQCHRCQLYGHSARNCNARPRCVKC-LDDHATTDCSRVKETATEP 477
R G C C GH C RC C H +C + +P
Sbjct: 126 RWLQGCCFNCLGLGHQKSACPGSTRCYNCWYSGHIARNCPTSRAARAQP 174
>12_01_0093 + 732276-732619,732722-732731
Length = 117
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 350 CPGVPRL*GASTVTPDRRTRCGDMR 276
C GV L A+T T DRRT C ++
Sbjct: 54 CSGVRSLNSAATTTADRRTACNCLK 78
>08_02_1050 +
23949828-23949981,23950083-23950534,23951599-23951631,
23952069-23952179,23953175-23953348
Length = 307
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +2
Query: 509 HGQLPWMPQGSTEAPGKRAP*NRWPKDFGAPRAETGFRTGSGCPT 643
H +LP P S RAP RWP A + G + + PT
Sbjct: 19 HCRLPPSPSPSPSPLLSRAPSRRWPPPLRASASGRGGASAAAAPT 63
>07_01_0716 +
5472618-5472818,5472943-5472985,5473672-5473761,
5473863-5473938,5474435-5474504,5474911-5475075,
5475261-5475404,5475547-5475651,5475876-5476022,
5476463-5476531,5476882-5476989,5477392-5477483,
5477559-5477598,5478129-5478221,5478386-5478958,
5479596-5479610
Length = 676
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 539 SLGASTVVGRGPCLRQSTQLGGS 471
++ A+ VG GPCLR S G S
Sbjct: 617 TMAANAAVGEGPCLRSSALSGSS 639
>03_06_0745 + 35937173-35938256,35938994-35939721
Length = 603
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -1
Query: 608 RRAGRRSLWASGFRGRVCRALPW 540
RRAG +AS F GR LPW
Sbjct: 107 RRAGESCGYASSFTGRFASKLPW 129
>03_06_0587 - 34921535-34922041,34922579-34922689
Length = 205
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 322 APYKRGTPGQCHRCQLYGHSARNC 393
AP G G C++C GH AR C
Sbjct: 118 APRGSGGGGDCYKCGKPGHFAREC 141
>01_06_1507 -
37838645-37839311,37839393-37839499,37839588-37839663,
37839747-37839869,37840051-37840208,37840311-37840385,
37840466-37840506,37840594-37840670,37840755-37840883,
37840990-37841060,37841237-37841332,37841489-37841584,
37841681-37841953,37842871-37842957,37843101-37843178,
37843350-37843514,37843622-37843768,37843921-37843983,
37844082-37844201,37844352-37844543,37844672-37844748,
37845094-37845196,37845684-37845887
Length = 1074
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +1
Query: 280 MSPHRVRLSGVTVEAPYKRGTPGQCHRCQLYGHSARNCNAR 402
++ H V S + E Y G +C C GH A NC +
Sbjct: 241 LATHEVHFS-ILREVVYTPGQQDKCFLCGQVGHLAANCEGK 280
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,847,703
Number of Sequences: 37544
Number of extensions: 472291
Number of successful extensions: 1576
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 1500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1571
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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