Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0244
(662 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 38 0.008
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 38 0.008
Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical pr... 35 0.045
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr... 35 0.045
Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical pr... 35 0.045
Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical pr... 35 0.045
Z93395-1|CAB07704.1| 1160|Caenorhabditis elegans Hypothetical pr... 35 0.045
Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical pr... 35 0.045
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr... 35 0.045
Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical pr... 35 0.045
Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical pr... 35 0.045
L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membra... 35 0.045
DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related ... 35 0.045
DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related ... 35 0.045
AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeti... 35 0.045
AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeti... 35 0.045
Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical pr... 33 0.18
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ... 33 0.24
Z81131-2|CAB03425.1| 349|Caenorhabditis elegans Hypothetical pr... 32 0.32
AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical ... 32 0.32
Z71181-6|CAA94899.1| 647|Caenorhabditis elegans Hypothetical pr... 30 1.7
AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein. 29 2.9
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o... 29 2.9
Z32681-7|CAA83603.1| 108|Caenorhabditis elegans Hypothetical pr... 29 3.9
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 29 3.9
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 29 3.9
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 29 3.9
AB009658-1|BAA82662.1| 108|Caenorhabditis elegans Ceinsulin-2 p... 29 3.9
Z93391-7|CAB07685.3| 405|Caenorhabditis elegans Hypothetical pr... 28 5.1
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 28 5.1
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 28 5.1
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 28 5.1
Z81583-5|CAB04673.1| 574|Caenorhabditis elegans Hypothetical pr... 28 6.8
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr... 28 6.8
AC084157-1|AAK68492.2| 185|Caenorhabditis elegans Hypothetical ... 28 6.8
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 27 9.0
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +1
Query: 337 GTPGQCHRCQLYGHSARNCNARPR-CVKCLD-DHATTDCSRVKETATEPPSCV 489
G C C+ YGH A C+A R C C D +H +C+ + + P+ V
Sbjct: 199 GISNTCFNCKKYGHRATECSAPQRECANCGDPNHRANECASWSKNGVQEPTKV 251
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +1
Query: 337 GTPGQCHRCQLYGHSARNCNARPR-CVKCLD-DHATTDCSRVKETATEPPSCV 489
G C C+ YGH A C+A R C C D +H +C+ + + P+ V
Sbjct: 199 GISNTCFNCKKYGHRATECSAPQRECANCGDPNHRANECASWSKNGVQEPTKV 251
>Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 35.1 bits (77), Expect = 0.045
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 12/78 (15%)
Frame = +1
Query: 331 KRGTPGQCHR------CQLYGHSARNCNARPRCVKCLDDHATTDCSRVKE------TATE 474
+RGTP C C HS R C++ RC+ C + T C R K+ T
Sbjct: 995 RRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHCERCKKGYYGDATKGS 1054
Query: 475 PPSCVLCRKQGPRPTTVD 528
P C C G +D
Sbjct: 1055 PYDCTPCPCPGASDCYLD 1072
>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 35.1 bits (77), Expect = 0.045
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 12/78 (15%)
Frame = +1
Query: 331 KRGTPGQCHR------CQLYGHSARNCNARPRCVKCLDDHATTDCSRVKE------TATE 474
+RGTP C C HS R C++ RC+ C + T C R K+ T
Sbjct: 995 RRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHCERCKKGYYGDATKGS 1054
Query: 475 PPSCVLCRKQGPRPTTVD 528
P C C G +D
Sbjct: 1055 PYDCTPCPCPGASDCYLD 1072
>Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical protein
ZC101.2c protein.
Length = 2295
Score = 35.1 bits (77), Expect = 0.045
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 12/78 (15%)
Frame = +1
Query: 331 KRGTPGQCHR------CQLYGHSARNCNARPRCVKCLDDHATTDCSRVKE------TATE 474
+RGTP C C HS R C++ RC+ C + T C R K+ T
Sbjct: 995 RRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHCERCKKGYYGDATKGS 1054
Query: 475 PPSCVLCRKQGPRPTTVD 528
P C C G +D
Sbjct: 1055 PYDCTPCPCPGASDCYLD 1072
>Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 35.1 bits (77), Expect = 0.045
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 12/78 (15%)
Frame = +1
Query: 331 KRGTPGQCHR------CQLYGHSARNCNARPRCVKCLDDHATTDCSRVKE------TATE 474
+RGTP C C HS R C++ RC+ C + T C R K+ T
Sbjct: 995 RRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHCERCKKGYYGDATKGS 1054
Query: 475 PPSCVLCRKQGPRPTTVD 528
P C C G +D
Sbjct: 1055 PYDCTPCPCPGASDCYLD 1072
>Z93395-1|CAB07704.1| 1160|Caenorhabditis elegans Hypothetical protein
ZC101.2b protein.
Length = 1160
Score = 35.1 bits (77), Expect = 0.045
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 12/78 (15%)
Frame = +1
Query: 331 KRGTPGQCHR------CQLYGHSARNCNARPRCVKCLDDHATTDCSRVKE------TATE 474
+RGTP C C HS R C++ RC+ C + T C R K+ T
Sbjct: 995 RRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHCERCKKGYYGDATKGS 1054
Query: 475 PPSCVLCRKQGPRPTTVD 528
P C C G +D
Sbjct: 1055 PYDCTPCPCPGASDCYLD 1072
>Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 35.1 bits (77), Expect = 0.045
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 12/78 (15%)
Frame = +1
Query: 331 KRGTPGQCHR------CQLYGHSARNCNARPRCVKCLDDHATTDCSRVKE------TATE 474
+RGTP C C HS R C++ RC+ C + T C R K+ T
Sbjct: 995 RRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHCERCKKGYYGDATKGS 1054
Query: 475 PPSCVLCRKQGPRPTTVD 528
P C C G +D
Sbjct: 1055 PYDCTPCPCPGASDCYLD 1072
>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 35.1 bits (77), Expect = 0.045
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 12/78 (15%)
Frame = +1
Query: 331 KRGTPGQCHR------CQLYGHSARNCNARPRCVKCLDDHATTDCSRVKE------TATE 474
+RGTP C C HS R C++ RC+ C + T C R K+ T
Sbjct: 995 RRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHCERCKKGYYGDATKGS 1054
Query: 475 PPSCVLCRKQGPRPTTVD 528
P C C G +D
Sbjct: 1055 PYDCTPCPCPGASDCYLD 1072
>Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical protein
ZC101.2c protein.
Length = 2295
Score = 35.1 bits (77), Expect = 0.045
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 12/78 (15%)
Frame = +1
Query: 331 KRGTPGQCHR------CQLYGHSARNCNARPRCVKCLDDHATTDCSRVKE------TATE 474
+RGTP C C HS R C++ RC+ C + T C R K+ T
Sbjct: 995 RRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHCERCKKGYYGDATKGS 1054
Query: 475 PPSCVLCRKQGPRPTTVD 528
P C C G +D
Sbjct: 1055 PYDCTPCPCPGASDCYLD 1072
>Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 35.1 bits (77), Expect = 0.045
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 12/78 (15%)
Frame = +1
Query: 331 KRGTPGQCHR------CQLYGHSARNCNARPRCVKCLDDHATTDCSRVKE------TATE 474
+RGTP C C HS R C++ RC+ C + T C R K+ T
Sbjct: 995 RRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHCERCKKGYYGDATKGS 1054
Query: 475 PPSCVLCRKQGPRPTTVD 528
P C C G +D
Sbjct: 1055 PYDCTPCPCPGASDCYLD 1072
>L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membrane
proteoglycan protein.
Length = 2481
Score = 35.1 bits (77), Expect = 0.045
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 12/78 (15%)
Frame = +1
Query: 331 KRGTPGQCHR------CQLYGHSARNCNARPRCVKCLDDHATTDCSRVKE------TATE 474
+RGTP C C HS R C++ RC+ C + T C R K+ T
Sbjct: 994 RRGTPNDCQPEATRAPCHCNNHSPRGCDSFGRCLLCEHNTEGTHCERCKKGYYGDATKGS 1053
Query: 475 PPSCVLCRKQGPRPTTVD 528
P C C G +D
Sbjct: 1054 PYDCTPCPCPGASDCYLD 1071
>DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related
alternative variant b protein.
Length = 482
Score = 35.1 bits (77), Expect = 0.045
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = +2
Query: 200 AQRARXIRVRYGARST--RSPPEGKKIASCLRTVCAYRGSP*RPPTNAALPGSATVA--- 364
A+ + +RV G ST + PP + T +PP +A+ PG A+ A
Sbjct: 373 ARNRQPLRVNPGTPSTTIKKPPVASSVQRQPPTRARSVDRSGQPPISASTPGKASRADLF 432
Query: 365 NSMATPRVTATRDRVA 412
N +ATP+VTAT R +
Sbjct: 433 NRLATPKVTATPTRTS 448
>DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related
alternative variant a protein.
Length = 507
Score = 35.1 bits (77), Expect = 0.045
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = +2
Query: 200 AQRARXIRVRYGARST--RSPPEGKKIASCLRTVCAYRGSP*RPPTNAALPGSATVA--- 364
A+ + +RV G ST + PP + T +PP +A+ PG A+ A
Sbjct: 373 ARNRQPLRVNPGTPSTTIKKPPVASSVQRQPPTRARSVDRSGQPPISASTPGKASRADLF 432
Query: 365 NSMATPRVTATRDRVA 412
N +ATP+VTAT R +
Sbjct: 433 NRLATPKVTATPTRTS 448
>AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeting
protein for xenopusklp2)-like protein 1, isoform b
protein.
Length = 482
Score = 35.1 bits (77), Expect = 0.045
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = +2
Query: 200 AQRARXIRVRYGARST--RSPPEGKKIASCLRTVCAYRGSP*RPPTNAALPGSATVA--- 364
A+ + +RV G ST + PP + T +PP +A+ PG A+ A
Sbjct: 373 ARNRQPLRVNPGTPSTTIKKPPVASSVQRQPPTRARSVDRSGQPPISASTPGKASRADLF 432
Query: 365 NSMATPRVTATRDRVA 412
N +ATP+VTAT R +
Sbjct: 433 NRLATPKVTATPTRTS 448
>AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeting
protein for xenopusklp2)-like protein 1, isoform a
protein.
Length = 507
Score = 35.1 bits (77), Expect = 0.045
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = +2
Query: 200 AQRARXIRVRYGARST--RSPPEGKKIASCLRTVCAYRGSP*RPPTNAALPGSATVA--- 364
A+ + +RV G ST + PP + T +PP +A+ PG A+ A
Sbjct: 373 ARNRQPLRVNPGTPSTTIKKPPVASSVQRQPPTRARSVDRSGQPPISASTPGKASRADLF 432
Query: 365 NSMATPRVTATRDRVA 412
N +ATP+VTAT R +
Sbjct: 433 NRLATPKVTATPTRTS 448
>Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical
protein C27B7.5 protein.
Length = 386
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +1
Query: 334 RGTPGQCHRCQLYGHSARNCNARPRCVKCLDDH 432
RG PG C CQ +GH +R C P+ V D+H
Sbjct: 164 RGGPGHCFHCQEHGHISRMC---PKKVGETDEH 193
>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
protein R52.2 protein.
Length = 1019
Score = 32.7 bits (71), Expect = 0.24
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Frame = +1
Query: 313 TVEAPYKRGTP-GQCHRCQLYGHSARNCNARPR-CVKCLDDHATTDCSRVKETATEPPS 483
T EA ++ G C C GH C +RPR C C +H T C AT P+
Sbjct: 334 TAEARIQKAREIGLCFGCLRSGHQRSKC-SRPRTCNHCKGNHHTVFCQSHNRNATRNPN 391
>Z81131-2|CAB03425.1| 349|Caenorhabditis elegans Hypothetical
protein T24D1.3 protein.
Length = 349
Score = 32.3 bits (70), Expect = 0.32
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Frame = +1
Query: 304 SGVTVEAPYKR---GTPGQCHRCQLYGHSARNCNARPRCVKCLDDHATTDCSRVKETATE 474
+G+T P +R G+ G+C C S CN CL +C + ++
Sbjct: 255 TGITDRHPRRRNQDGSHGECTMCFEVPVSPLGCN------NCLQIIGCEECVDIWYRSSS 308
Query: 475 PPSCVLCRKQGPRPTTV 525
PSC LCR++ R V
Sbjct: 309 KPSCPLCRRKWARKPDV 325
>AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical
protein F49F1.8 protein.
Length = 615
Score = 32.3 bits (70), Expect = 0.32
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 346 GQCHRCQLYGHSARNCNAR 402
GQCH C+ GH ARNC +
Sbjct: 574 GQCHYCKNVGHMARNCKKK 592
>Z71181-6|CAA94899.1| 647|Caenorhabditis elegans Hypothetical
protein K07C5.6 protein.
Length = 647
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +1
Query: 244 H*KPTGGQENCLMSPHRVRLSGVTVEAPYKRGTPGQCHRCQLYGHSARNCNARPR 408
H +P +E + H G T ++ K G C C GH R+C RPR
Sbjct: 80 HQRPHEEREKKMTQIHEWYQKGTTGKSATKF-RKGACENCGAMGHQKRDCFDRPR 133
>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
Length = 1475
Score = 29.1 bits (62), Expect = 2.9
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Frame = +1
Query: 277 LMSPHRVRLSGVTVEAPYKRGTPGQCHRCQL------YGHSARNCNARPRCVKCLDDHAT 438
L SP+ + L+ + AP K +P Q H + Y +P K L +
Sbjct: 860 LQSPNHLPLTPSPLSAPPKPFSPEQQHHFGMKMRETSYWKELERLETKPDVEK-LKQQLS 918
Query: 439 TDCSRVKETATEPPSCVLCRKQGPRPTTVDAP 534
+ S + A++PPS + P+P++ AP
Sbjct: 919 SSSSSSQAEASDPPSTSTEAQDPPKPSSSSAP 950
>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
pal-1 protein 3,isoform a protein.
Length = 1475
Score = 29.1 bits (62), Expect = 2.9
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Frame = +1
Query: 277 LMSPHRVRLSGVTVEAPYKRGTPGQCHRCQL------YGHSARNCNARPRCVKCLDDHAT 438
L SP+ + L+ + AP K +P Q H + Y +P K L +
Sbjct: 860 LQSPNHLPLTPSPLSAPPKPFSPEQQHHFGMKMRETSYWKELERLETKPDVEK-LKQQLS 918
Query: 439 TDCSRVKETATEPPSCVLCRKQGPRPTTVDAP 534
+ S + A++PPS + P+P++ AP
Sbjct: 919 SSSSSSQAEASDPPSTSTEAQDPPKPSSSSAP 950
>Z32681-7|CAA83603.1| 108|Caenorhabditis elegans Hypothetical
protein F56F3.6 protein.
Length = 108
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = +2
Query: 2 GTRKHPTTIGLDRV-PPQGTHRVSYLCAPGGA-*TPRRNTRSPQRARRRA 145
G P I D + PP+ H LC PGGA N P R RRR+
Sbjct: 21 GLFSRPAPITRDTIRPPRAKHGSLKLCPPGGASFLDAFNLICPMRRRRRS 70
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 325 PYKRGTPGQCHRCQLYGHSARNC 393
P K P C+ CQ GH++R+C
Sbjct: 275 PKKEREPRVCYNCQQPGHNSRDC 297
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 325 PYKRGTPGQCHRCQLYGHSARNC 393
P K P C+ CQ GH++R+C
Sbjct: 389 PKKEREPRVCYNCQQPGHNSRDC 411
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 325 PYKRGTPGQCHRCQLYGHSARNC 393
P K P C+ CQ GH++R+C
Sbjct: 275 PKKEREPRVCYNCQQPGHNSRDC 297
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 325 PYKRGTPGQCHRCQLYGHSARNC 393
P K P C+ CQ GH++R+C
Sbjct: 389 PKKEREPRVCYNCQQPGHNSRDC 411
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 325 PYKRGTPGQCHRCQLYGHSARNC 393
P K P C+ CQ GH++R+C
Sbjct: 275 PKKEREPRVCYNCQQPGHNSRDC 297
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 325 PYKRGTPGQCHRCQLYGHSARNC 393
P K P C+ CQ GH++R+C
Sbjct: 389 PKKEREPRVCYNCQQPGHNSRDC 411
>AB009658-1|BAA82662.1| 108|Caenorhabditis elegans Ceinsulin-2
protein.
Length = 108
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = +2
Query: 2 GTRKHPTTIGLDRV-PPQGTHRVSYLCAPGGA-*TPRRNTRSPQRARRRA 145
G P I D + PP+ H LC PGGA N P R RRR+
Sbjct: 21 GLFSRPAPITRDTIRPPRAKHGSLKLCPPGGASFLDAFNLICPMRRRRRS 70
>Z93391-7|CAB07685.3| 405|Caenorhabditis elegans Hypothetical
protein W04G5.9 protein.
Length = 405
Score = 28.3 bits (60), Expect = 5.1
Identities = 24/74 (32%), Positives = 30/74 (40%)
Frame = +2
Query: 221 RVRYGARSTRSPPEGKKIASCLRTVCAYRGSP*RPPTNAALPGSATVANSMATPRVTATR 400
R+ ST PPE AS RT+ + PPT P T +S T R AT
Sbjct: 123 RITTTKASTLEPPEAPTKASTARTISTTETTT-SPPTTTVTP--RTTRSS--TARTVATT 177
Query: 401 DRVA*SA*TITRPP 442
+ T T+PP
Sbjct: 178 KTSPSTLRTTTKPP 191
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 325 PYKRGTPGQCHRCQLYGHSARNC 393
P K P C+ CQ GH++R C
Sbjct: 176 PRKEREPRVCYNCQQPGHTSREC 198
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 325 PYKRGTPGQCHRCQLYGHSARNC 393
P K P C+ CQ GH++R C
Sbjct: 176 PRKEREPRVCYNCQQPGHTSREC 198
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 325 PYKRGTPGQCHRCQLYGHSARNC 393
P K P C+ CQ GH++R C
Sbjct: 176 PRKEREPRVCYNCQQPGHTSREC 198
>Z81583-5|CAB04673.1| 574|Caenorhabditis elegans Hypothetical
protein T02G6.5 protein.
Length = 574
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = -1
Query: 170 LTYQVILNLLDVELFG-DSAYYDAEFTLLLERIGM 69
L++Q++ N DVE+FG D + + E +LL+RI +
Sbjct: 394 LSHQMLDNCHDVEIFGPDFSLRNDEVNILLDRINL 428
>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
protein C16A3.7 protein.
Length = 1119
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1
Query: 343 PGQCHRCQLYGHSARNCNARPRCVKCLDD 429
PG C C+L+ + NC + V+C D
Sbjct: 340 PGPCIECKLFTTKSCNCGKTKKSVRCGSD 368
>AC084157-1|AAK68492.2| 185|Caenorhabditis elegans Hypothetical
protein Y46E12BR.1 protein.
Length = 185
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 158 PGRSVLPRHKCAPDAQRARXIRVRY-GAR 241
PGR + R C PD ++ + IR+ Y GA+
Sbjct: 14 PGRQEIGRKLCLPDTRKVQVIRLMYRGAK 42
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +2
Query: 530 PQGSTEAPGKRA-P*NRWPKDFGAPRAET 613
P+GST APG RA P R P AP A T
Sbjct: 297 PRGSTAAPGTRAPPATRAPPATRAPPATT 325
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,893,741
Number of Sequences: 27780
Number of extensions: 328375
Number of successful extensions: 1027
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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