Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0244
(662 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 36 0.018
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 32 0.30
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 31 0.68
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 30 1.2
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 29 2.1
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 29 2.1
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 29 2.1
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 29 2.1
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 29 2.1
At1g64790.1 68414.m07346 translational activator family protein ... 29 2.8
At3g50280.1 68416.m05498 transferase family protein similar to a... 28 4.8
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 28 4.8
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 28 4.8
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 28 4.8
At4g34230.1 68417.m04864 cinnamyl-alcohol dehydrogenase, putativ... 28 6.4
At3g19450.1 68416.m02466 cinnamyl-alcohol dehydrogenase (CAD) id... 27 8.4
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 27 8.4
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 27 8.4
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 36.3 bits (80), Expect = 0.018
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +1
Query: 349 QCHRCQLYGHSARNCNARPRCVKC-LDDHATTDCSRVKETATEPPSCVLCRKQG 507
+C C+ GH A NC+ C C H DCS A + C C KQG
Sbjct: 94 RCWNCREPGHVASNCSNEGICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQG 147
Score = 34.7 bits (76), Expect = 0.056
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 352 CHRCQLYGHSARNCNARPRCVKCLD-DHATTDCS 450
C+ C L GH A C A RC C + H ++CS
Sbjct: 76 CNNCGLPGHIAAECTAESRCWNCREPGHVASNCS 109
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = +1
Query: 352 CHRCQLYGHSARNCNARPRCVKC-LDDHATTDCSR 453
C C+ GH AR+C P C C + H C +
Sbjct: 159 CKNCRTSGHIARDCRNDPVCNICSISGHVARHCPK 193
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 352 CHRCQLYGHSARNCNARPRCVKC-LDDHATTDCS 450
C+ C+ GH AR+C+ C C L H +C+
Sbjct: 57 CNNCKRPGHFARDCSNVSVCNNCGLPGHIAAECT 90
Score = 28.3 bits (60), Expect = 4.8
Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 8/62 (12%)
Frame = +1
Query: 346 GQCHRCQLYGHSARNC-NARPR------CVKCL-DDHATTDCSRVKETATEPPSCVLCRK 501
G CH C GH AR+C N+ R C C H DC T +C CR
Sbjct: 112 GICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADC-------TNDKACKNCRT 164
Query: 502 QG 507
G
Sbjct: 165 SG 166
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 32.3 bits (70), Expect = 0.30
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Frame = +1
Query: 352 CHRCQLYGHSARNC-------NARPRCVKCLD-DHATTDCS-RVKETATEPPSCVLCRKQ 504
C +C+ GHS +NC + + C C D H+ + C +++ T+ SC +C+ Q
Sbjct: 101 CLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSHCPYPMEDGGTKFASCFICKGQ 160
Query: 505 G 507
G
Sbjct: 161 G 161
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 31.1 bits (67), Expect = 0.68
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +1
Query: 280 MSPHRVRLSGVTVEAPYKRGTPGQCHRCQLYGHSARNCNARPR 408
++ H V S + E Y G +C C GH A NC +P+
Sbjct: 241 LATHEVHFS-ILREVVYTPGQQERCFLCGQMGHFASNCEGKPK 282
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Frame = +1
Query: 337 GTPGQCHRCQLYGHSARNCNARPR----CVKC-LDDHATTDC-SRVKETATEPPSCVLCR 498
G G C+ C GH AR+C + + C +C H DC R +C C
Sbjct: 227 GGSGTCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCG 286
Query: 499 KQG 507
K+G
Sbjct: 287 KEG 289
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Frame = +1
Query: 334 RGTP---GQCHRCQLYGHSARNCNA---RPRCVKCLD-DHATTDC 447
RG P G+C C + GH AR+C A + +C +C + H +C
Sbjct: 92 RGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 136
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Frame = +1
Query: 334 RGTP---GQCHRCQLYGHSARNCNA---RPRCVKCLD-DHATTDC 447
RG P G+C C + GH AR+C A + +C +C + H +C
Sbjct: 51 RGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 95
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Frame = +1
Query: 334 RGTP---GQCHRCQLYGHSARNCNA---RPRCVKCLD-DHATTDC 447
RG P G+C C + GH AR+C A + +C +C + H +C
Sbjct: 51 RGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 95
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Frame = +1
Query: 334 RGTP---GQCHRCQLYGHSARNCNA---RPRCVKCLD-DHATTDC 447
RG P G+C C + GH AR+C A + +C +C + H +C
Sbjct: 62 RGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 106
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Frame = +1
Query: 334 RGTP---GQCHRCQLYGHSARNCNA---RPRCVKCLD-DHATTDC 447
RG P G+C C + GH AR+C A + +C +C + H +C
Sbjct: 92 RGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 136
>At1g64790.1 68414.m07346 translational activator family protein
similar to HsGCN1 [Homo sapiens] GI:2282576
Length = 2440
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +2
Query: 194 PDAQRARXIRVR--YGARSTRSPPEGKKIASCLRTVCAY 304
PD A V+ G + S PEGK I S RT+C++
Sbjct: 259 PDTIEAMFASVKAIIGVQELASAPEGKYIGSLSRTICSF 297
>At3g50280.1 68416.m05498 transferase family protein similar to
anthranilate N-hydroxycinnamoyl/benzoyltransferase,
Dianthus caryophyllus, PIR:T10717 [gi:2239091]; contains
Pfam transferase family domain PF002458
Length = 443
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = -1
Query: 320 STVTPDRRTRCG---DMRQFSCPPVGF*CYEHHIVREFXAPAVHPVHTYDGVGLTYQVIL 150
S + + +TRC D+RQ PP+ C+ H I V +H G+G + I
Sbjct: 276 SGLNQEEKTRCFVAVDLRQRLNPPLDKECFGHVIYNSVVTTTVGELHD-QGLGWAFLQIN 334
Query: 149 NLL 141
N+L
Sbjct: 335 NML 337
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1
Query: 331 KRGTPGQCHRCQLYGHSARNCNARPRCVKCLDDHATTDC 447
K GTP C++C GH AR+C + A DC
Sbjct: 234 KTGTP--CYKCGKEGHWARDCTVQSDTGPVKSTSAAGDC 270
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 28.3 bits (60), Expect = 4.8
Identities = 32/84 (38%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Frame = +2
Query: 101 PRRNTRSPQRARRRAN*E*PGRSVLPRHKCAPDAQRARXIRVRYGARSTRSP-PEGKKIA 277
P R RSP ARRR + P R R +P A+R R Y R RSP P ++
Sbjct: 356 PARRHRSPPPARRRRSPSPPARR---RRSPSPPARRRRSPSPLY--RRNRSPSPLYRRNR 410
Query: 278 SCLRTVCAYRG---SP*RPPTNAA 340
S R+ A RG SP R P+ A
Sbjct: 411 S--RSPLAKRGRSDSPGRSPSPVA 432
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 9/66 (13%)
Frame = +1
Query: 343 PGQCHRCQLYGHSARNCN-------ARPRCVKCLDD-HATTDCSRVKETATEPPS-CVLC 495
P C++C GH AR+C+ A C C ++ H + C + P C C
Sbjct: 33 PRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYWC 92
Query: 496 RKQGPR 513
Q R
Sbjct: 93 GNQDHR 98
>At4g34230.1 68417.m04864 cinnamyl-alcohol dehydrogenase, putative
similar to cinnamyl alcohol dehydrogenase, Nicotiana
tabacum [SP|P30359], Populus deltoides, PATCHX:G288753
Length = 357
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +3
Query: 69 HTYALQE----ERELRVVIRGVPKELDVEQIKNDLVGQSYPVISVHRM 200
+TY L+E + +R++ G+ D+ Q KNDL +YP++ H +
Sbjct: 25 YTYTLRETGPEDVNIRIICCGIC-HTDLHQTKNDLGMSNYPMVPGHEV 71
>At3g19450.1 68416.m02466 cinnamyl-alcohol dehydrogenase (CAD)
identical to SP|P48523 Cinnamyl-alcohol dehydrogenase
(EC 1.1.1.195) (CAD) [Arabidopsis thaliana]
Length = 365
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 99 LRVVIRGVPKELDVEQIKNDLVGQSYPVISVHRM 200
++V+ G+ D+ QIKNDL +YP++ H +
Sbjct: 40 IKVICCGIC-HTDIHQIKNDLGMSNYPMVPGHEV 72
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 27.5 bits (58), Expect = 8.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 334 RGTPGQCHRCQLYGHSARNC 393
+GT +C +C+ GH AR+C
Sbjct: 111 KGTEDECFKCRRPGHWARDC 130
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 27.5 bits (58), Expect = 8.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 334 RGTPGQCHRCQLYGHSARNC 393
+GT +C +C+ GH AR+C
Sbjct: 111 KGTEDECFKCRRPGHWARDC 130
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,239,813
Number of Sequences: 28952
Number of extensions: 301983
Number of successful extensions: 880
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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