Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0243
(671 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q7QCL6 Cluster: ENSANGP00000010850; n=1; Anopheles gamb... 55 2e-06
UniRef50_UPI0000E45E6A Cluster: PREDICTED: similar to Ku70; n=4;... 53 7e-06
UniRef50_A7RH48 Cluster: Predicted protein; n=1; Nematostella ve... 50 4e-05
UniRef50_Q26228 Cluster: ATP-dependent DNA helicase 2 subunit 1;... 48 3e-04
UniRef50_UPI0000DB7B0B Cluster: PREDICTED: similar to ATP-depend... 44 0.003
UniRef50_P12956 Cluster: ATP-dependent DNA helicase 2 subunit 1;... 44 0.003
UniRef50_UPI0000D569CB Cluster: PREDICTED: similar to Yolk prote... 44 0.004
UniRef50_Q6BLW3 Cluster: Similar to ca|CA0779|IPF20065 Candida a... 41 0.031
UniRef50_A3GHQ1 Cluster: Predicted protein; n=1; Pichia stipitis... 40 0.055
UniRef50_Q2H0I3 Cluster: Protein Ku70; n=2; Sordariomycetes|Rep:... 40 0.072
UniRef50_O94395 Cluster: Protein Ku70; n=1; Schizosaccharomyces ... 39 0.096
UniRef50_A6SBE8 Cluster: Putative uncharacterized protein; n=2; ... 39 0.13
UniRef50_A4S1U1 Cluster: Predicted protein; n=2; Ostreococcus|Re... 38 0.17
UniRef50_Q23976 Cluster: ATP-dependent DNA helicase 2 subunit 1;... 38 0.29
UniRef50_UPI000023E4BC Cluster: hypothetical protein FG06721.1; ... 37 0.39
UniRef50_Q4CY05 Cluster: KU70 protein, putative; n=3; Trypanosom... 36 0.67
UniRef50_Q1RLD0 Cluster: Zinc finger protein; n=2; Eukaryota|Rep... 36 0.67
UniRef50_Q2MHH4 Cluster: Protein Ku70; n=19; Fungi/Metazoa group... 36 0.67
UniRef50_Q9U2D2 Cluster: Putative uncharacterized protein cku-70... 36 0.89
UniRef50_Q6CUB4 Cluster: Protein Ku70; n=1; Kluyveromyces lactis... 36 1.2
UniRef50_Q54MA9 Cluster: ATP-dependent DNA helicase; n=1; Dictyo... 35 2.1
UniRef50_Q8RGW9 Cluster: DNA integrity scanning protein disA; n=... 35 2.1
UniRef50_UPI0000DAE6D7 Cluster: hypothetical protein Rgryl_01001... 34 2.7
UniRef50_Q4A7R9 Cluster: ABC transporter permease protein; n=5; ... 34 2.7
UniRef50_A6PI41 Cluster: SEC-C motif domain protein; n=1; Shewan... 34 2.7
UniRef50_A3IZU0 Cluster: Predicted glycosyltransferase; n=1; Cya... 34 3.6
UniRef50_Q54X32 Cluster: Putative uncharacterized protein; n=1; ... 34 3.6
UniRef50_Q4UFN8 Cluster: Putative uncharacterized protein; n=2; ... 34 3.6
UniRef50_Q22YX0 Cluster: Putative uncharacterized protein; n=1; ... 34 3.6
UniRef50_A0D7B4 Cluster: Sodium/hydrogen exchanger; n=1; Paramec... 34 3.6
UniRef50_A7MAS2 Cluster: Ku70-like protein; n=1; Vigna radiata|R... 33 4.8
UniRef50_A2G3P2 Cluster: Clan CA, family C19, ubiquitin hydrolas... 33 4.8
UniRef50_A4RM93 Cluster: Putative uncharacterized protein; n=1; ... 33 4.8
UniRef50_UPI00006CBC9F Cluster: hypothetical protein TTHERM_0014... 33 6.3
UniRef50_Q37880 Cluster: Integrase; n=1; Lactobacillus phage phi... 33 6.3
UniRef50_UPI00006CC0D8 Cluster: hypothetical protein TTHERM_0021... 33 8.3
UniRef50_A7BYA5 Cluster: Putative uncharacterized protein; n=1; ... 33 8.3
UniRef50_A0Z3J2 Cluster: Indolepyruvate ferredoxin oxidoreductas... 33 8.3
UniRef50_A2EF35 Cluster: Putative uncharacterized protein; n=2; ... 33 8.3
UniRef50_Q4P415 Cluster: Putative uncharacterized protein; n=1; ... 33 8.3
UniRef50_P32807 Cluster: Protein Ku70; n=22; Saccharomycetaceae|... 33 8.3
>UniRef50_Q7QCL6 Cluster: ENSANGP00000010850; n=1; Anopheles gambiae
str. PEST|Rep: ENSANGP00000010850 - Anopheles gambiae
str. PEST
Length = 498
Score = 54.8 bits (126), Expect = 2e-06
Identities = 38/103 (36%), Positives = 54/103 (52%), Gaps = 11/103 (10%)
Frame = +1
Query: 10 EKSIEGSTTALKAMHQACIETKTVAICVICSRINSKPNIVALSPCTR----PLG-LDIDI 174
E I GSTT +A+++ C+E VAIC++ R +VAL P T PLG D
Sbjct: 332 ESYINGSTTLYRALYEKCLEKNQVAICMLTMRRKQPSKLVALVPQTELAHDPLGEADRHC 391
Query: 175 GFDVIPLPFSENVRDL----SSLFSDEIADTQT--HKKICSKI 285
GF V +PF+ ++R L S + E+ D QT KK+ K+
Sbjct: 392 GFRVDFIPFAGDIRKLPFLEESATAPEVTDEQTDLFKKMIKKV 434
Score = 46.0 bits (104), Expect = 8e-04
Identities = 22/55 (40%), Positives = 34/55 (61%)
Frame = +3
Query: 255 SDTQKDMLKNIINNVKFNYTPSMFENPKLQSLYRVIEAKALKQDDIEPFVDTTKP 419
+D Q D+ K +I VKF + P+ FE+P Q+L+ IE+ +D E F D+T+P
Sbjct: 420 TDEQTDLFKKMIKKVKFKFHPTHFEDPSSQNLFINIESLVFDVEDAELF-DSTRP 473
>UniRef50_UPI0000E45E6A Cluster: PREDICTED: similar to Ku70; n=4;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
Ku70 - Strongylocentrotus purpuratus
Length = 281
Score = 52.8 bits (121), Expect = 7e-06
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Frame = +3
Query: 249 RYSDTQKDMLKNIINNVKFNYTPSMFENPKLQSLYRVIEAKALKQDDIEPFVDTTKPLNK 428
R + Q D KN++ ++F ++ FENP LQ+ YR +EA AL +D + VD T+P +
Sbjct: 152 RATPDQIDKAKNVVKKLQFQFSSENFENPVLQTHYRTLEALALDRDTTDDMVDHTEPNKE 211
Query: 429 IFNEIDG---EQFYELFGPFGVTAVKRNSEQNQL 521
+ G +F E P G + + + +L
Sbjct: 212 MIERRAGPGIREFMESVFPEGYDPTAKPAARKKL 245
Score = 47.6 bits (108), Expect = 3e-04
Identities = 31/76 (40%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Frame = +1
Query: 7 EEKSIEGSTTALKAMHQACIETKTVAICVICSRINSKPNIVALSPCTRPLG-LDIDI--- 174
+E S+ GS T A+ Q C VAIC R NS P VAL P L + I
Sbjct: 70 DETSVSGSNTLFNALLQRCSARDKVAICRYIPRKNSPPKFVALLPQKEELDEHSVQITPP 129
Query: 175 GFDVIPLPFSENVRDL 222
GF +I LPFS+++R L
Sbjct: 130 GFHLIFLPFSDDMRKL 145
>UniRef50_A7RH48 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 607
Score = 50.4 bits (115), Expect = 4e-05
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Frame = +1
Query: 7 EEKSIEGSTTALKAMHQACIETKTVAICVICSRINSKPNIVALSPCTRPL-GLDIDI--- 174
+EKSI GSTT A+ C++ V IC R ++ P+ VAL P ++ +
Sbjct: 368 DEKSITGSTTLFSALLTKCLDRDVVPICRYIPRGSAAPSFVALLPQEEEYDDSNVQVTPP 427
Query: 175 GFDVIPLPFSENVRDLSSLFSDEIADTQTHK--KICSKI 285
GF VI LPF++++R L E+++ Q K KI K+
Sbjct: 428 GFHVIFLPFADDMRKLKYPKKPEVSEDQIEKAQKIIRKL 466
>UniRef50_Q26228 Cluster: ATP-dependent DNA helicase 2 subunit 1;
n=1; Rhipicephalus appendiculatus|Rep: ATP-dependent DNA
helicase 2 subunit 1 - Rhipicephalus appendiculatus
(Brown ear tick)
Length = 600
Score = 47.6 bits (108), Expect = 3e-04
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Frame = +3
Query: 273 MLKNIINNVKFNYTPSMFENPKLQSLYRVIEAKALKQDDIEPFVDTTKPLNKIFNEIDGE 452
+ + + ++F Y P FENP+LQ + +EA AL +DD E D T+P ++ GE
Sbjct: 449 LAREMAEKLRFTYHPDKFENPELQGFWSCLEALALDRDDAEHPKDYTRPDHEKMKAKAGE 508
Query: 453 Q---FYELFGPFGVTAVKRNSEQ 512
+ F E P G +A S +
Sbjct: 509 EMDAFLEAAFPDGCSATTAGSRK 531
Score = 44.8 bits (101), Expect = 0.002
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Frame = +1
Query: 7 EEKSIEGSTTALKAMHQACIETKTVAICVICSRINSKPNIVALSPCTR---PLGLD-IDI 174
+E S+ GST A+ Q+C+ + IC SR P +V L P GL +
Sbjct: 357 DEGSVRGSTRLFAALLQSCLRHRVAPICFWISRAAQAPKLVYLLAQEEERDPHGLQMVPP 416
Query: 175 GFDVIPLPFSENVRDLSSL 231
GF V+ LPFS++ R L +L
Sbjct: 417 GFHVVQLPFSDDRRRLQAL 435
>UniRef50_UPI0000DB7B0B Cluster: PREDICTED: similar to ATP-dependent
DNA helicase 2 subunit 1 (ATP-dependent DNA helicase II
70 kDa subunit) (Ku autoantigen protein p70 homolog)
(Ku70) (CTC box-binding factor 75 kDa subunit) (CTCBF)
(CTC75) (DNA-repair protein XRCC6), partial; n=1; Apis
mellifera|Rep: PREDICTED: similar to ATP-dependent DNA
helicase 2 subunit 1 (ATP-dependent DNA helicase II 70
kDa subunit) (Ku autoantigen protein p70 homolog) (Ku70)
(CTC box-binding factor 75 kDa subunit) (CTCBF) (CTC75)
(DNA-repair protein XRCC6), partial - Apis mellifera
Length = 399
Score = 44.0 bits (99), Expect = 0.003
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +3
Query: 270 DMLKNIINNVKFNYTPSMFENPKLQSLYRVIEAKALKQDDIEPFVDTTKP 419
++LKNI+ + Y P +F NPKLQ +++E AL + + D T P
Sbjct: 309 ELLKNIMKKLNIEYNPKLFSNPKLQIQLQIVETLALDLEQFKSLPDDTLP 358
Score = 36.7 bits (81), Expect = 0.51
Identities = 23/67 (34%), Positives = 32/67 (47%)
Frame = +1
Query: 46 AMHQACIETKTVAICVICSRINSKPNIVALSPCTRPLGLDIDIGFDVIPLPFSENVRDLS 225
A+ C K + IC + R S ++ + P + GF + +PF ENVRDLS
Sbjct: 233 ALLNKCDSKKLMIICAVTIRSYSASSLYTMIPNVN------NGGFYLYKMPFRENVRDLS 286
Query: 226 SLFSDEI 246
FSD I
Sbjct: 287 EYFSDFI 293
>UniRef50_P12956 Cluster: ATP-dependent DNA helicase 2 subunit 1;
n=45; Euteleostomi|Rep: ATP-dependent DNA helicase 2
subunit 1 - Homo sapiens (Human)
Length = 609
Score = 44.0 bits (99), Expect = 0.003
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 6/124 (4%)
Frame = +3
Query: 264 QKDMLKNIINNVKFNYTPSMFENPKLQSLYRVIEAKALKQDDIEPFVDTTKPLNKIFNEI 443
Q +K I+ ++F Y FENP LQ +R +EA AL + E VD T P + N+
Sbjct: 458 QVGKMKAIVEKLRFTYRSDSFENPVLQQHFRNLEALALDLMEPEQAVDLTLPKVEAMNKR 517
Query: 444 DG---EQFYELFGPFGVT---AVKRNSEQNQLIPNYKRLADVNIDVLDPRVKDRKVNMYT 605
G ++F EL P V + N+ + + + + + L + + +T
Sbjct: 518 LGSLVDEFKELVYPPDYNPEGKVTKRKHDNEGSGSKRPKVEYSEEELKTHISKGTLGKFT 577
Query: 606 VPQL 617
VP L
Sbjct: 578 VPML 581
Score = 39.9 bits (89), Expect = 0.055
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Frame = +1
Query: 7 EEKSIEGSTTALKAMHQACIETKTVAICVICSRINSKPNIVALSPCTRPL-GLDIDI--- 174
EE + GS+T A+ C+E + A+C R N P VAL P L I +
Sbjct: 371 EESLVIGSSTLFSALLIKCLEKEVAALCRYTPRRNIPPYFVALVPQEEELDDQKIQVTPP 430
Query: 175 GFDVIPLPFSENVRDLSSLFSDEIADT 255
GF ++ LPF+++ R + F+++I T
Sbjct: 431 GFQLVFLPFADDKRKMP--FTEKIMAT 455
>UniRef50_UPI0000D569CB Cluster: PREDICTED: similar to Yolk protein
factor 1 beta subunit (ATP-dependent helicase Irbp)
(Inverted repeat-binding protein); n=1; Tribolium
castaneum|Rep: PREDICTED: similar to Yolk protein factor
1 beta subunit (ATP-dependent helicase Irbp) (Inverted
repeat-binding protein) - Tribolium castaneum
Length = 512
Score = 43.6 bits (98), Expect = 0.004
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Frame = +3
Query: 243 NSRYSDTQKDMLKNIINNVKFNYTPSMFENPKLQSLYRVIEAKALK--QDDIEPFVDTTK 416
N +S +I+N+ F+Y P MF NP L + +K L+ Q+D+E +
Sbjct: 412 NESFSKKMLQTTNELIDNLTFDYDPKMFTNPSLTKKKAYLRSKLLEEPQEDVEDVSLDSA 471
Query: 417 PLNKIFNEIDGEQFYELFGPFGVTAVKRNS 506
++K ++ G F LFG TA KR +
Sbjct: 472 AIDKRLGDL-GASFKMLFGLEEQTAPKRKA 500
>UniRef50_Q6BLW3 Cluster: Similar to ca|CA0779|IPF20065 Candida
albicans IPF20065; n=1; Debaryomyces hansenii|Rep:
Similar to ca|CA0779|IPF20065 Candida albicans IPF20065
- Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 738
Score = 40.7 bits (91), Expect = 0.031
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Frame = +1
Query: 10 EKSIEGSTTALKAMHQACIETKTVAICVICSRINSKPNIVALSPC----TRPLGLDIDIG 177
E + S +++Q+CI+ + + C + NS PN+ AL P + GL+ G
Sbjct: 471 EGGYKNSFKTFSSLYQSCIKLQKYGVLFGCLKKNSMPNLYALYPTKATNSNKSGLNFPEG 530
Query: 178 FDVIPLPFSENVRDL 222
F +I LP+ ++VR L
Sbjct: 531 FFLIRLPWLDDVRSL 545
>UniRef50_A3GHQ1 Cluster: Predicted protein; n=1; Pichia
stipitis|Rep: Predicted protein - Pichia stipitis
(Yeast)
Length = 739
Score = 39.9 bits (89), Expect = 0.055
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Frame = +1
Query: 22 EGSTTALKAMHQACIETKTVAICVICSRINSKPNIVALSP-----CTRPL--GLDIDIGF 180
+ S T +++Q+C+ K + C R N+KP++ AL P R + G D GF
Sbjct: 471 QNSFTTFSSLYQSCVRLKKYGVVFGCIRPNAKPSMYALYPTRVENSMRKIDDGPDFPEGF 530
Query: 181 DVIPLPFSENVRDLSSLFSDEIADTQT 261
+I P+ +++R L + F + A+ T
Sbjct: 531 MLIRTPWLDDIRGLPNHFLENTANQFT 557
>UniRef50_Q2H0I3 Cluster: Protein Ku70; n=2; Sordariomycetes|Rep:
Protein Ku70 - Chaetomium globosum (Soil fungus)
Length = 622
Score = 39.5 bits (88), Expect = 0.072
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +3
Query: 249 RYSDTQKDMLKNIINNV---KFNYTPSMFENPKLQSLYRVIEAKALKQDDIEPFVDTTKP 419
R +D D ++ I+ N+ K Y P + NP LQ Y+V++A AL +D E D T P
Sbjct: 448 RPADELTDKMREIVQNLQLPKAMYNPLKYPNPSLQWHYKVLQAMALDEDVPEALDDATIP 507
>UniRef50_O94395 Cluster: Protein Ku70; n=1; Schizosaccharomyces
pombe|Rep: Protein Ku70 - Schizosaccharomyces pombe
(Fission yeast)
Length = 607
Score = 39.1 bits (87), Expect = 0.096
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +3
Query: 270 DMLKNIINNVKF-NYTPSMFENPKLQSLYRVIEAKALKQDDIEPFVDTTKPLNKIFNEID 446
+ ++ I+ ++ +Y P + NP LQ Y+V++A AL ++ FVD T P K +
Sbjct: 444 ETMQRILRGMELRSYQPGKYNNPSLQWHYKVLQALALDEEIPTDFVDNTLPKYKAIQKRV 503
Query: 447 GE 452
GE
Sbjct: 504 GE 505
>UniRef50_A6SBE8 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 864
Score = 38.7 bits (86), Expect = 0.13
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Frame = +1
Query: 10 EKSIEGSTTALKAMHQACIETKTVAICVICSRINSKPNIVALSPCTRPLGLDIDIGFDVI 189
+K+ E + AL ++ A E + A+ I + S P IV L+P P GL+ G +
Sbjct: 371 QKTNEKARMALSSLIHALHELDSCAVARIVKKDGSDPLIVLLAPLIEP-GLE---GLIDV 426
Query: 190 PLPFSENVR-----DLSSLFSDEIADTQTHKKICSKIL 288
PLPF+E+VR L +F+ + HK + S L
Sbjct: 427 PLPFAEDVRAYRFAPLDKVFNSSGGIMEKHKNLPSNDL 464
>UniRef50_A4S1U1 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 341
Score = 38.3 bits (85), Expect = 0.17
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = +3
Query: 249 RYSDTQKDMLKNIINNVKFN-YTPSMFENPKLQSLYRVIEAKALKQDDIEPFVDTTKP 419
R ++ Q +++I+ ++ + P NP LQ+ YRV+E AL+++ +EP D T+P
Sbjct: 151 RANEAQITAARSVIDAIRLTQWHPKQTPNPALQTHYRVLEMCALERNVMEPVHDDTEP 208
>UniRef50_Q23976 Cluster: ATP-dependent DNA helicase 2 subunit 1;
n=4; Sophophora|Rep: ATP-dependent DNA helicase 2
subunit 1 - Drosophila melanogaster (Fruit fly)
Length = 631
Score = 37.5 bits (83), Expect = 0.29
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Frame = +1
Query: 7 EEKSIEGSTTALKAMHQACIETKTVAICVICSRINSKPNIVALSPCTRP-LGLDIDI--- 174
+++SI GS +A+ + C+ +AIC+ + S P VAL P P G D +
Sbjct: 382 DDQSIIGSKRLFRALWERCLVRDKIAICLFMCKRKSIPRYVALVPVEAPDNGEDKNYRSL 441
Query: 175 ----GFDVIPLPFSENVRDLSSLFSDEIADTQTHKKI 273
GF ++ LP ++++R L + +T +K+
Sbjct: 442 LCGDGFKIVYLPEAKHIRHLDLQDWNNTENTADEQKV 478
>UniRef50_UPI000023E4BC Cluster: hypothetical protein FG06721.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG06721.1 - Gibberella zeae PH-1
Length = 693
Score = 37.1 bits (82), Expect = 0.39
Identities = 23/63 (36%), Positives = 37/63 (58%)
Frame = +1
Query: 28 STTALKAMHQACIETKTVAICVICSRINSKPNIVALSPCTRPLGLDIDIGFDVIPLPFSE 207
ST AL ++ A E ++ AI I ++ P +V L+P P D++ +D IPLPF+E
Sbjct: 346 STIALSSLVWALSELESYAIARIVTKDGKDPLLVLLAPGVEP---DMECLYD-IPLPFAE 401
Query: 208 NVR 216
++R
Sbjct: 402 DIR 404
>UniRef50_Q4CY05 Cluster: KU70 protein, putative; n=3; Trypanosoma
cruzi|Rep: KU70 protein, putative - Trypanosoma cruzi
Length = 852
Score = 36.3 bits (80), Expect = 0.67
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Frame = +1
Query: 22 EGSTTALKAMHQACIETKTVAICVICSRINSKPNIVALSPCTRPLGLDI------DIGFD 183
E S + + + VA+ +R + P +VAL+P + + + +G
Sbjct: 581 EASLRLFVQLTRTLVRGNKVAVAQYVARRGAAPRLVALAPSSPAVPVPTCSLPAKGLGLY 640
Query: 184 VIPLPFSENVRDLSSL 231
V+PLP+SE++RD+ SL
Sbjct: 641 VVPLPYSEDIRDVPSL 656
>UniRef50_Q1RLD0 Cluster: Zinc finger protein; n=2; Eukaryota|Rep:
Zinc finger protein - Ciona intestinalis (Transparent
sea squirt)
Length = 710
Score = 36.3 bits (80), Expect = 0.67
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +1
Query: 10 EKSIEGSTTALKAMHQACIETKTVAICVICSRINSKPNIVALSPCTRPLGLDIDIGFDVI 189
E E + TAL A+ A ++ A+ R S P +VAL P + LG + ++
Sbjct: 377 EAGDEHAGTALSALCTAMVKQNLCAVACHVYRKGSNPKLVALLPKVK-LGSHYLV---MV 432
Query: 190 PLPFSENVRDLS--SLFS 237
LPF+E+VR LS SLFS
Sbjct: 433 SLPFAEDVRPLSFESLFS 450
>UniRef50_Q2MHH4 Cluster: Protein Ku70; n=19; Fungi/Metazoa
group|Rep: Protein Ku70 - Aspergillus oryzae
Length = 655
Score = 36.3 bits (80), Expect = 0.67
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Frame = +1
Query: 10 EKSIEGSTTALKAMHQACIETKTVAICVICSRINSKPNIVALSPCTRPL---GLD-IDIG 177
E+ GST A+HQ + K A+ +R N+ P + A+ L G+ G
Sbjct: 397 EEDFVGSTRVFSALHQTLLRDKKAALVWFIARKNASPVLGAMVAGEEKLDESGVQKFPPG 456
Query: 178 FDVIPLPFSENVR 216
+IPLPF+++VR
Sbjct: 457 MWIIPLPFADDVR 469
Score = 34.7 bits (76), Expect = 2.1
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = +3
Query: 270 DMLKNIINNV---KFNYTPSMFENPKLQSLYRVIEAKALKQDDIEPFVDTTKPLNKIFNE 440
D ++ I+ + K +Y P + NP LQ YR+++A AL +D E D T P + ++
Sbjct: 485 DQMRYIVQQLQLPKASYDPFKYPNPSLQWHYRILQALALDEDLPEKPEDKTLPRYRQIDK 544
Query: 441 IDGE 452
G+
Sbjct: 545 RTGD 548
>UniRef50_Q9U2D2 Cluster: Putative uncharacterized protein cku-70;
n=2; Caenorhabditis|Rep: Putative uncharacterized
protein cku-70 - Caenorhabditis elegans
Length = 691
Score = 35.9 bits (79), Expect = 0.89
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Frame = +3
Query: 255 SDTQKDMLKNIINNVKFNYTPSMFENPKLQS------LYRVIEAKALKQDDIEPFVDTTK 416
++ Q + +K + + +Y PS +ENP+L S L E ++D +EP+ K
Sbjct: 523 TEEQVNTMKQFVKRLTMSYNPSFYENPRLLSERSALCLEATGEELIERRDTLEPYYQIPK 582
Query: 417 PLNKIFNEID 446
L ++ EI+
Sbjct: 583 RLQRVGTEIE 592
>UniRef50_Q6CUB4 Cluster: Protein Ku70; n=1; Kluyveromyces
lactis|Rep: Protein Ku70 - Kluyveromyces lactis (Yeast)
(Candida sphaerica)
Length = 592
Score = 35.5 bits (78), Expect = 1.2
Identities = 24/92 (26%), Positives = 42/92 (45%)
Frame = +1
Query: 10 EKSIEGSTTALKAMHQACIETKTVAICVICSRINSKPNIVALSPCTRPLGLDIDIGFDVI 189
E+ GS L ++++ + K A+ R NS P++ L+P ++ D + GF +
Sbjct: 394 EEDYAGSIKTLASLYRTMLFKKKSAMVWGKLRPNSPPSMFVLTPSSKK---DYNQGFYLY 450
Query: 190 PLPFSENVRDLSSLFSDEIADTQTHKKICSKI 285
+PF E VR L + K+ SK+
Sbjct: 451 KVPFMEEVRKLPDFLNHSALIESDDYKVMSKV 482
Score = 33.9 bits (74), Expect = 3.6
Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 12/127 (9%)
Frame = +3
Query: 255 SDTQKDMLK---NIIN--NVKFNYTPSMFENPKLQSLYRVIEAKALKQDDIEPFVDTTKP 419
SD K M K +IN N+K Y PS F NP LQ ++++ L+ IE VD +KP
Sbjct: 473 SDDYKVMSKVTETLINFFNLKNGYRPSDFHNPALQKHFKILREYLLQ---IE--VDKSKP 527
Query: 420 LNKIFNEIDGEQFYELFGPFGVTAVKRNSEQNQLIPN-------YKRLADVNIDVLDPRV 578
++ + ++ +++ +A + +Q +L+ Y RL+++ +D +
Sbjct: 528 EDE--GDETLQKVKQIYARIASSAKSDDVKQQRLVKYLKLWNSFYNRLSNLEVDTKPTKN 585
Query: 579 KDRKVNM 599
K K+N+
Sbjct: 586 KKAKLNL 592
>UniRef50_Q54MA9 Cluster: ATP-dependent DNA helicase; n=1;
Dictyostelium discoideum AX4|Rep: ATP-dependent DNA
helicase - Dictyostelium discoideum AX4
Length = 909
Score = 34.7 bits (76), Expect = 2.1
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +1
Query: 7 EEKSIEGSTTALKAMHQACIETKTVAICVICSRINSKPNIVALSP 141
+++SI+GS A A+ + +++ AIC R +S P +VAL P
Sbjct: 431 DDQSIKGSVLAFNALVEQMLKSGKAAICRFTPRSSSSPRMVALIP 475
>UniRef50_Q8RGW9 Cluster: DNA integrity scanning protein disA; n=3;
Fusobacterium nucleatum|Rep: DNA integrity scanning
protein disA - Fusobacterium nucleatum subsp. nucleatum
Length = 349
Score = 34.7 bits (76), Expect = 2.1
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Frame = +3
Query: 255 SDTQKDMLKNIINNVKFNYTPSMFENPKLQSLYRVIE-AKALKQDDIEPFVDTTKPLNKI 431
SD++ ++N++ + ++ + S+F+N YRV+E L + D+E V+T K +++I
Sbjct: 254 SDSELLEVENVVVALGYSKSSSVFDNKIAAKGYRVLEKISKLTKKDVEKIVNTYKDISEI 313
Query: 432 FNEIDGEQF 458
E+ E F
Sbjct: 314 -QEVTDEDF 321
>UniRef50_UPI0000DAE6D7 Cluster: hypothetical protein
Rgryl_01001015; n=1; Rickettsiella grylli|Rep:
hypothetical protein Rgryl_01001015 - Rickettsiella
grylli
Length = 390
Score = 34.3 bits (75), Expect = 2.7
Identities = 26/123 (21%), Positives = 53/123 (43%), Gaps = 2/123 (1%)
Frame = +3
Query: 243 NSRYSDTQKDMLKNIINNVKFNYTPSMFENPKLQSLYRVIEAKALKQDDIEPFVDTTKPL 422
+ + K +L ++ N+ P+ EN L +E +KQD +DT +
Sbjct: 71 HEKLQQVYKTILSAAETEIQTNFDPTETENSAQNKLKSKLER--IKQDVYPTLIDTLRIQ 128
Query: 423 NKIFNE-IDGEQFYELFGPF-GVTAVKRNSEQNQLIPNYKRLADVNIDVLDPRVKDRKVN 596
N++FN D ++ F + + + K N+ ++ + +LA + + + + K R N
Sbjct: 129 NQVFNNPADEKELSAAFSDYWNIISKKYNNNVRKINLIWSKLAALKLHIRNEEKKLRSKN 188
Query: 597 MYT 605
T
Sbjct: 189 SAT 191
>UniRef50_Q4A7R9 Cluster: ABC transporter permease protein; n=5;
Mycoplasma hyopneumoniae|Rep: ABC transporter permease
protein - Mycoplasma hyopneumoniae (strain 7448)
Length = 2651
Score = 34.3 bits (75), Expect = 2.7
Identities = 36/156 (23%), Positives = 60/156 (38%), Gaps = 9/156 (5%)
Frame = +3
Query: 126 SGSFTLYSAPWFRYRYWI*CHTITIFRKCKGSLKSFFR*NSRYSDTQKDMLKNIINNVKF 305
S SF+LYS YW I++ + K FF +S+ + D K + +
Sbjct: 2378 SKSFSLYSPSG----YWAGSSKISVDQLNKDDTIGFFANIFAFSENETDKTKGALQIAGY 2433
Query: 306 ---------NYTPSMFENPKLQSLYRVIEAKALKQDDIEPFVDTTKPLNKIFNEIDGEQF 458
N+ E P L S + A + + K K FNEI GE
Sbjct: 2434 TKQEILDLINFDKKNQEKPWLNSASALDFASLTNPSFVNQNIPEIKKALKNFNEIYGETI 2493
Query: 459 YELFGPFGVTAVKRNSEQNQLIPNYKRLADVNIDVL 566
Y++ G+T ++ + + I N+ L I+++
Sbjct: 2494 YQI----GLTGLEAKNIETNFISNFANLFGAGINIV 2525
>UniRef50_A6PI41 Cluster: SEC-C motif domain protein; n=1;
Shewanella sediminis HAW-EB3|Rep: SEC-C motif domain
protein - Shewanella sediminis HAW-EB3
Length = 309
Score = 34.3 bits (75), Expect = 2.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -2
Query: 433 NILFSGFVVSTKGSMSSCFNAFASITLYNDCNLGFSNMLG 314
N+LF G + SCF++ ++T +DCN N+LG
Sbjct: 56 NLLFFGICLIVDRKQFSCFDSLINLTNKDDCNAPLDNLLG 95
>UniRef50_A3IZU0 Cluster: Predicted glycosyltransferase; n=1;
Cyanothece sp. CCY 0110|Rep: Predicted
glycosyltransferase - Cyanothece sp. CCY 0110
Length = 659
Score = 33.9 bits (74), Expect = 3.6
Identities = 27/117 (23%), Positives = 48/117 (41%)
Frame = +3
Query: 192 ITIFRKCKGSLKSFFR*NSRYSDTQKDMLKNIINNVKFNYTPSMFENPKLQSLYRVIEAK 371
I + K K ++ +S Y DML N N++K YT E K+QS I+ +
Sbjct: 353 IQVLEKFKNEVEDLIS-SSEYFGLDPDMLNNFSNDIKNQYTKYQGELTKIQSTISKIDDR 411
Query: 372 ALKQDDIEPFVDTTKPLNKIFNEIDGEQFYELFGPFGVTAVKRNSEQNQLIPNYKRL 542
+ E D K I +++++ T+++ S N+ I + +L
Sbjct: 412 EKVMRERERINDVIKEHQTIIKNYK-QEYHQKIDSIINTSLENYSLLNETIKSLDKL 467
>UniRef50_Q54X32 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 976
Score = 33.9 bits (74), Expect = 3.6
Identities = 22/82 (26%), Positives = 39/82 (47%)
Frame = +3
Query: 219 SLKSFFR*NSRYSDTQKDMLKNIINNVKFNYTPSMFENPKLQSLYRVIEAKALKQDDIEP 398
+L++ F N D ++ ++ +I NN N P N K Q ++ E + D +
Sbjct: 845 NLQNRFNINQENDDDEEKLISDIFNNNNSNSNP----NKKQQKQNQIQEDDETESFDDDN 900
Query: 399 FVDTTKPLNKIFNEIDGEQFYE 464
D+ + L K E+DG+Q Y+
Sbjct: 901 DDDSLRGLLKELEELDGDQSYD 922
>UniRef50_Q4UFN8 Cluster: Putative uncharacterized protein; n=2;
Theileria|Rep: Putative uncharacterized protein -
Theileria annulata
Length = 778
Score = 33.9 bits (74), Expect = 3.6
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 17/122 (13%)
Frame = +3
Query: 258 DTQKDMLKNIINNVKFNYTPSMFENPKLQSLYRVI-EAKALKQD--DIEPFVDTT----- 413
DTQK +LKNI+ + + F+N K+ +Y + K +K + D++P V+
Sbjct: 486 DTQK-VLKNIVRI--YIHDDKAFKNVKVPKIYELAPNKKNMKFNCKDLDPTVEYNSIIYP 542
Query: 414 KPLNKIFN---------EIDGEQFYELFGPFGVTAVKRNSEQNQLIPNYKRLADVNIDVL 566
K N +F +I+ QF ELFG G+T +K + L N+ D+ + L
Sbjct: 543 KGKNTVFRNIVDTVEPEKIETVQFEELFGSSGITILKSPETDSDLEINFDENYDITANHL 602
Query: 567 DP 572
P
Sbjct: 603 RP 604
>UniRef50_Q22YX0 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 5233
Score = 33.9 bits (74), Expect = 3.6
Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Frame = +3
Query: 258 DTQKDMLKNIINNVKFNYTPSMFENPKLQSLYRVIE-AKALKQDD-IEPFVDTTKPLNKI 431
+T + LKN + + + NY P + +N KL + + +K+++ ++ + +K L +
Sbjct: 3053 ETHQPQLKNTLQSSQTNYVPQINDNDKLNIQHNDLALINVIKENESLQEHIPISKNLQE- 3111
Query: 432 FNEIDGEQFYELFGPFGVTAVKRNSEQNQLIPNYKRL 542
N+ +Q L FG T K N + N + + L
Sbjct: 3112 -NKTQNKQNVNLGQIFGFTQKKGNQQNNSSLSELQGL 3147
>UniRef50_A0D7B4 Cluster: Sodium/hydrogen exchanger; n=1; Paramecium
tetraurelia|Rep: Sodium/hydrogen exchanger - Paramecium
tetraurelia
Length = 493
Score = 33.9 bits (74), Expect = 3.6
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = -2
Query: 430 ILFSGFVVSTKGSMSSCFNAFASITLYNDCNLGFS-NMLGV*LNFTLLIIFLSISFCVSE 254
++F +++ S++S A++ YND + G +LG L F L II + C+S
Sbjct: 181 LIFGESILNDAVSLTSYEQFQAALDFYNDSDQGVGWVILGFFLEFILSIIIGFVIGCLSA 240
Query: 253 YLLFHLKKDLRDPLHFLKMVMV 188
Y+L +D +D + L+ +++
Sbjct: 241 YILKKRNEDSQDSIAELENIIM 262
>UniRef50_A7MAS2 Cluster: Ku70-like protein; n=1; Vigna radiata|Rep:
Ku70-like protein - Vigna radiata
Length = 629
Score = 33.5 bits (73), Expect = 4.8
Identities = 17/50 (34%), Positives = 30/50 (60%)
Frame = +3
Query: 270 DMLKNIINNVKFNYTPSMFENPKLQSLYRVIEAKALKQDDIEPFVDTTKP 419
D++K + ++K +++ NP LQ Y V++A AL++DD+ D T P
Sbjct: 478 DLIKRV--DLK-DFSVCQISNPALQRHYAVLQALALEEDDVPEMKDETLP 524
>UniRef50_A2G3P2 Cluster: Clan CA, family C19, ubiquitin
hydrolase-like cysteine peptidase; n=1; Trichomonas
vaginalis G3|Rep: Clan CA, family C19, ubiquitin
hydrolase-like cysteine peptidase - Trichomonas
vaginalis G3
Length = 1639
Score = 33.5 bits (73), Expect = 4.8
Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 4/117 (3%)
Frame = +3
Query: 309 YTPSMFENPKLQSLYRVIEAKALKQ--DDIEPFVDTTKPLNKI--FNEIDGEQFYELFGP 476
+TP F N + Y V + L+Q DD D + + E+ E+F+EL
Sbjct: 6 WTPEAFANWQAGFSYAVTDLNHLEQYLDDFSELTDYIIENHGLPPTCEVKTEKFFELLIS 65
Query: 477 FGVTAVKRNSEQNQLIPNYKRLADVNIDVLDPRVKDRKVNMYTVPQL*RYTGNIRKP 647
VK + + N L P + R D+ D+ + Y + L Y NIR+P
Sbjct: 66 VTGALVKNHLKSNTLQPIFLRFVDIVFDIFQIAL---DFPTYAIEFLSYYIFNIRQP 119
>UniRef50_A4RM93 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 754
Score = 33.5 bits (73), Expect = 4.8
Identities = 19/65 (29%), Positives = 35/65 (53%)
Frame = +1
Query: 22 EGSTTALKAMHQACIETKTVAICVICSRINSKPNIVALSPCTRPLGLDIDIGFDVIPLPF 201
E A A+ A ET++ + + ++ +P ++ L P + DI+ +DV PLPF
Sbjct: 381 EKDELAFSALVNALYETESYGVARLVAKDGKEPQLLLLMP---HIDTDIECLYDV-PLPF 436
Query: 202 SENVR 216
+E++R
Sbjct: 437 AEDIR 441
>UniRef50_UPI00006CBC9F Cluster: hypothetical protein
TTHERM_00148870; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00148870 - Tetrahymena
thermophila SB210
Length = 963
Score = 33.1 bits (72), Expect = 6.3
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 16/111 (14%)
Frame = +3
Query: 264 QKDMLKNIINNVKFNYTPSMFENPK-LQSLYRV--IEAKALK--QDDIEPFVDTTKPLNK 428
+++++ N +N K NY S+ PK ++ + E K +K I F+ L K
Sbjct: 46 KEEVITNFLNKYKLNYEKSLIVKPKEIKQKHNCEETEKKIIKDFNHSISKFIYKGIKLEK 105
Query: 429 IFNEI--DGE-------QFYELFGPFGVTAVKRNSEQNQL--IPNYKRLAD 548
F+++ DGE +FY+LF +K EQ +L +PNY + D
Sbjct: 106 FFSKVNSDGEFAKEFGRRFYDLFAELFNQFLKFIQEQIRLRSLPNYLYMID 156
>UniRef50_Q37880 Cluster: Integrase; n=1; Lactobacillus phage
phiadh|Rep: Integrase - Lactobacillus phage phiadh
Length = 385
Score = 33.1 bits (72), Expect = 6.3
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = +3
Query: 327 ENPKLQSLYRVIEAKALKQDDIEPFVDTTKPLNKIFN---EIDGEQFYELFGPFGVTAVK 497
+NP L+ +A KQD IE + T K L+K+FN E FY LF +T ++
Sbjct: 159 KNPALKVKINFKNERAKKQDRIENWYLTDKELSKLFNHCLEKKRNDFYALFKMLYLTGMR 218
Query: 498 RNSEQNQLIPN 530
L+ N
Sbjct: 219 LGEGCGLLVKN 229
>UniRef50_UPI00006CC0D8 Cluster: hypothetical protein
TTHERM_00218610; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00218610 - Tetrahymena
thermophila SB210
Length = 750
Score = 32.7 bits (71), Expect = 8.3
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 381 QDDIE-PFVDTTKPLNKIFNEIDGEQFYELFGPFGVTAVKRNSEQNQLI 524
QD +E F D +IF I+ +Q + F PF T ++ S+QN L+
Sbjct: 30 QDTVEMSFADFINFRQQIFYLIENDQLFTAFIPFATTYIQFQSQQNSLL 78
>UniRef50_A7BYA5 Cluster: Putative uncharacterized protein; n=1;
Beggiatoa sp. PS|Rep: Putative uncharacterized protein -
Beggiatoa sp. PS
Length = 188
Score = 32.7 bits (71), Expect = 8.3
Identities = 20/65 (30%), Positives = 35/65 (53%)
Frame = +3
Query: 213 KGSLKSFFR*NSRYSDTQKDMLKNIINNVKFNYTPSMFENPKLQSLYRVIEAKALKQDDI 392
KG L + F+ S Y+D Q+D L+ I + +T ++E K YRV + + KQ+ +
Sbjct: 80 KGELYNAFKLISDYTDVQRDNLEKEIKDKVIQWTLPVYEVNKSGEYYRV-QTDSGKQNVV 138
Query: 393 EPFVD 407
F++
Sbjct: 139 STFLN 143
>UniRef50_A0Z3J2 Cluster: Indolepyruvate ferredoxin oxidoreductase;
n=1; marine gamma proteobacterium HTCC2080|Rep:
Indolepyruvate ferredoxin oxidoreductase - marine gamma
proteobacterium HTCC2080
Length = 1183
Score = 32.7 bits (71), Expect = 8.3
Identities = 21/58 (36%), Positives = 32/58 (55%)
Frame = +3
Query: 468 FGPFGVTAVKRNSEQNQLIPNYKRLADVNIDVLDPRVKDRKVNMYTVPQL*RYTGNIR 641
F PFG TA +R + QLI +Y+RL + ++ L P KD + +P R G+I+
Sbjct: 1101 FDPFGYTAERRL--ERQLISDYQRLIEGLVNNLTPDKKDLFSQIAALPLSVRGYGHIK 1156
>UniRef50_A2EF35 Cluster: Putative uncharacterized protein; n=2;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 571
Score = 32.7 bits (71), Expect = 8.3
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 12/97 (12%)
Frame = +3
Query: 282 NIINNVK--FNYTPSMFENPKLQSLYRVIEAKALKQDDIEPFVDT----------TKPLN 425
N+ NN++ FNY + F P +S+ V++ K + + I+ +VDT ++ LN
Sbjct: 127 NLTNNIEKAFNYIKTNF--PTAESIQAVLQTKNIDSNTIQYYVDTIQYSKFKIDVSQLLN 184
Query: 426 KIFNEIDGEQFYELFGPFGVTAVKRNSEQNQLIPNYK 536
+E EQ+++L G+ + N++QN +P K
Sbjct: 185 SSVDEKTKEQYHKLIQ--GID-ISENAKQNPKLPVVK 218
>UniRef50_Q4P415 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 713
Score = 32.7 bits (71), Expect = 8.3
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Frame = +1
Query: 22 EGSTTALKAMHQACIETKTVAICVICSRINSKPNIVALSPCTRPLGLD----IDIGFDVI 189
+GS A+ + I V + + R N P VA+ P + D + G +I
Sbjct: 473 KGSRKTFTALLNSMISKDKVGLGLFMPRQNVVPVFVAIVPQEEEVSADGQQLVAPGMHLI 532
Query: 190 PLPFSENVRDLSS--LFSDEIADTQTHKKI 273
LP++++VRD+ + L +++ D Q K +
Sbjct: 533 TLPYADDVRDVPANLLHTEDAKDEQVDKAV 562
>UniRef50_P32807 Cluster: Protein Ku70; n=22;
Saccharomycetaceae|Rep: Protein Ku70 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 602
Score = 32.7 bits (71), Expect = 8.3
Identities = 25/87 (28%), Positives = 41/87 (47%)
Frame = +1
Query: 7 EEKSIEGSTTALKAMHQACIETKTVAICVICSRINSKPNIVALSPCTRPLGLDIDIGFDV 186
+E EGS L ++ + + +AI + NS P++ LSP + D + GF +
Sbjct: 390 DEAKYEGSIRTLASLLKILRKKDKIAILWGKLKSNSHPSLYTLSPSSVK---DYNEGFYL 446
Query: 187 IPLPFSENVRDLSSLFSDEIADTQTHK 267
+PF + +R SL S + D HK
Sbjct: 447 YRVPFLDEIRKFPSLLSYD--DGSEHK 471
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 635,745,641
Number of Sequences: 1657284
Number of extensions: 12621488
Number of successful extensions: 34399
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 33137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34389
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51652897375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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