Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0243
         (671 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    27   0.11 
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    24   1.3  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   1.7  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    23   1.7  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    21   6.9  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    21   9.2  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   9.2  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +1

Query: 43  KAMHQACIETKTVAICVICSRINSKPNIVALSPCTRPLGLDIDIGFDVIP 192
           K    +C +++  +   I + +NS  ++    P T  +GLD+  G DV P
Sbjct: 403 KGSSDSCSDSEENSQSDITNNVNSPASMNQTPPPTAQMGLDMVTGLDVKP 452


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 258 DTQKDMLKNIINNVKFNYTPSMFENPKLQSLYRV 359
           D +      I  N+  + T S+FE+ KL SLY +
Sbjct: 312 DPENHNKTEIFLNITGDKTNSVFEHVKLGSLYHI 345


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -2

Query: 379 FNAFASITLYNDCNLGFSNMLGV*LNFTLLIIFLSISFCVSEYLLFHLKKD 227
           F +F S  LY    L   +ML +  N  L+I+F   ++  + ++   LKKD
Sbjct: 53  FVSFVSYWLY--LVLEADDMLPIYKNTYLIILFADFAYLETTWICTLLKKD 101


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -2

Query: 379 FNAFASITLYNDCNLGFSNMLGV*LNFTLLIIFLSISFCVSEYLLFHLKKD 227
           F +F S  LY    L   +ML +  N  L+I+F   ++  + ++   LKKD
Sbjct: 71  FVSFVSYWLY--LVLEADDMLPIYKNTYLIILFADFAYLETTWICTLLKKD 119


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 351 YRVIEAKALKQDDIEPFVDTTKPLNKIFNEIDGEQ 455
           +RV  AK +   D+E    + K LN     +DG++
Sbjct: 201 FRVDAAKHMWPADLEAIYGSLKNLNTDHGFLDGQK 235


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 351 YRVIEAKALKQDDIEPFVDTTKPLNKIFNEIDGEQ 455
           +RV  AK +   D+E    + K LN     +DG++
Sbjct: 200 FRVDAAKHMWPADLEAIYASLKNLNTDHGFLDGQK 234


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 459 YELFGPFGVTAVKRNSEQNQLIPNYKR 539
           ++L G FG T V  + ++    PN  R
Sbjct: 137 HQLLGHFGATKVYNSMKREYYWPNMYR 163


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,913
Number of Sequences: 336
Number of extensions: 3666
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)