Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0243
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ...    39   6e-04
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    27   1.9  
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ...    27   3.3  
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    27   3.3  
SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1...    26   4.3  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    26   5.7  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    26   5.7  
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...    26   5.7  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    25   7.5  
SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa...    25   7.5  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    25   9.9  

>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 607

 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +3

Query: 270 DMLKNIINNVKF-NYTPSMFENPKLQSLYRVIEAKALKQDDIEPFVDTTKPLNKIFNEID 446
           + ++ I+  ++  +Y P  + NP LQ  Y+V++A AL ++    FVD T P  K   +  
Sbjct: 444 ETMQRILRGMELRSYQPGKYNNPSLQWHYKVLQALALDEEIPTDFVDNTLPKYKAIQKRV 503

Query: 447 GE 452
           GE
Sbjct: 504 GE 505


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = +1

Query: 91  VICSRINSKPNIVALSPCTRPLGLDIDIGFDVIP---LPFSENVRDLSSLFSD 240
           V CSR   K    A       LG+ +DI   V+P   L  +E+V  ++ LF D
Sbjct: 160 VTCSRELQKDMFAAAQVSLGALGVIVDITISVVPAFDLVATEDVTTVTDLFQD 212


>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
           Cct7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 558

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +3

Query: 279 KNIINNVKFNYTPSMFENPKLQSLYRVIEAKALKQDDIEPFVDTTKPLNKI 431
           K   +   F   P  F+NPK+  L   +E KA ++D+ E  VD  +    I
Sbjct: 222 KKTFSYAGFEQQPKFFKNPKILCLDVELELKA-EKDNAEVRVDKVQEYQNI 271


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 19/64 (29%), Positives = 33/64 (51%)
 Frame = -2

Query: 388 SSCFNAFASITLYNDCNLGFSNMLGV*LNFTLLIIFLSISFCVSEYLLFHLKKDLRDPLH 209
           SS   +FAS TL +   L F ++L V ++F +L    + S C +  +  H K+   D + 
Sbjct: 90  SSSLLSFASSTLDSLVRLDFLSLLPVEISFRILSFLDARSLCQAAQVSKHWKELADDDVI 149

Query: 208 FLKM 197
           + +M
Sbjct: 150 WHRM 153


>SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 318

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 243 NSRYSDTQKDMLKNIINNVKFNYTPSM 323
           +SRY    +D LKN +   +FN +P +
Sbjct: 210 HSRYMLPARDSLKNALGETEFNISPEL 236


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = +3

Query: 378 KQDDIEPFVDTTKPL--NKIFNEIDGEQFYELFGPFGVTAVKRNSEQNQLIPNYKRLADV 551
           + DD + +VD    L  N+ F E+D E F +    F +T +         +P+Y +  D+
Sbjct: 9   ESDDSQYWVDWFLGLKGNEFFCEVD-EDFIQ--DRFNLTGLSHE------VPHYSQSLDL 59

Query: 552 NIDVLDP 572
            +DVLDP
Sbjct: 60  ILDVLDP 66


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 604 VYIFTFLSLTLGSNTSILTSASLL*FGISWFCS 506
           + +F FL L   + + +LTSA     G+SW  S
Sbjct: 607 ITLFIFLYLIARNFSGVLTSAGTTLLGLSWLFS 639


>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 70  TKTVAICVICSRINSKPNIVALSPCTR 150
           TK V  C+IC+ IN K +    S CTR
Sbjct: 148 TKNVRFCIICNYIN-KISPAIQSRCTR 173


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 99  TNHTNSYSFCFNTCLVHCLE 40
           + H +S+S  + TC++H LE
Sbjct: 272 SKHVDSFSDVYPTCIIHILE 291


>SPAC4D7.09 |tif223||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 91  VICSRINSKPNIVALSPCTRPL 156
           +ICSR N+ PN   L+ C   L
Sbjct: 328 IICSRANNLPNYFELNKCIAKL 349


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +1

Query: 106 INSKPNIVALSPCTRPLGLDIDIGFDVIPLPFSEN-VRDLSSLFSDEIADTQ 258
           +N     ++LSPC R + L    G  V+ L    N  R L      E+ADTQ
Sbjct: 231 VNQPVGAMSLSPCGRDIALASRYGLLVLDLDNPYNPPRMLRHSTPWEVADTQ 282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,783,108
Number of Sequences: 5004
Number of extensions: 59101
Number of successful extensions: 166
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)