Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0243
         (671 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0088 - 12242020-12242941,12243467-12243550,12243591-12244438     31   1.1  
05_03_0657 + 16694833-16694963,16695567-16695684,16696280-166963...    29   3.4  
04_04_0671 - 27157692-27158620,27158711-27158828,27158967-271591...    29   4.5  
07_01_0771 + 5917550-5917829,5918390-5918526,5918617-5918742,591...    28   7.8  

>09_03_0088 - 12242020-12242941,12243467-12243550,12243591-12244438
          Length = 617

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 24/70 (34%), Positives = 29/70 (41%)
 Frame = +1

Query: 13  KSIEGSTTALKAMHQACIETKTVAICVICSRINSKPNIVALSPCTRPLGLDIDIGFDVIP 192
           + I+    A  A  ++C E     IC  CS      N VA   C RP+  D      V P
Sbjct: 418 QKIKAEHDATLAFRRSCRE----GICGSCSMCIDGVNTVA---CLRPVDTDTSSATTVTP 470

Query: 193 LPFSENVRDL 222
           LP    VRDL
Sbjct: 471 LPHMYVVRDL 480


>05_03_0657 +
           16694833-16694963,16695567-16695684,16696280-16696376,
           16700126-16700232,16700473-16700595,16700791-16700944,
           16701237-16701297,16701417-16701781,16701875-16703483,
           16703697-16703940
          Length = 1002

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +3

Query: 330 NPKL--QSLYRVIEAKALKQDDIEPFVDTTKPLNKIFNEIDGEQFYELFGPFGVTAVKRN 503
           NPKL  +   RVIE+  L++DD+    +  + + K   E+  E  Y+  GP      +R 
Sbjct: 806 NPKLCEKICERVIESHMLQKDDLTEHYEAMQNVRKRLRELCAE--YQATGPTARLFNQRG 863

Query: 504 SEQN 515
           S +N
Sbjct: 864 SSKN 867


>04_04_0671 -
           27157692-27158620,27158711-27158828,27158967-27159156,
           27159281-27159415,27159537-27159634,27160034-27160206,
           27160299-27160772,27161464-27161518
          Length = 723

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
 Frame = -2

Query: 649 CGFLMFPVY-L*SWGTVYIFTFLSLT---LGSNTSILTSASLL*FG--ISW 515
           CGFL FP + L +W   + F F SLT    G   S L + SLL FG  +SW
Sbjct: 296 CGFLQFPTFGLKAWKHTFFFDF-SLTYVGAGMICSHLVNLSLL-FGAILSW 344


>07_01_0771 +
           5917550-5917829,5918390-5918526,5918617-5918742,
           5919168-5919221,5919344-5919457,5919895-5919950,
           5920017-5920058,5920580-5920655,5920765-5920836,
           5920908-5921033,5921117-5921221,5921333-5921416,
           5921636-5921683
          Length = 439

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -1

Query: 641 PNVSSISLKLGYSIHIYFSVFNSWI*YINIDISQSFVVWY*LVLFTISFD 492
           P +  I+  L YS+ IY     SW  Y+  D+   F +    VL T+S D
Sbjct: 310 PGMYRINDDLEYSVEIYEWSGTSWKPYVADDVQVQFYMMSPYVLKTLSTD 359


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,105,239
Number of Sequences: 37544
Number of extensions: 307191
Number of successful extensions: 708
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)