Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0243
(671 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3581| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_8334| Best HMM Match : MIB_HERC2 (HMM E-Value=0) 31 0.64
SB_44237| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.84
SB_56731| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_18314| Best HMM Match : NUDIX (HMM E-Value=2e-05) 29 2.6
SB_55898| Best HMM Match : Carb_anhydrase (HMM E-Value=3.6) 29 4.5
SB_15469| Best HMM Match : RVT_1 (HMM E-Value=0.00014) 29 4.5
SB_14255| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_2939| Best HMM Match : Ku (HMM E-Value=2.8e-07) 28 7.9
>SB_3581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 523
Score = 49.6 bits (113), Expect = 2e-06
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Frame = +1
Query: 10 EKSIEGSTTALKAMHQACIETKTVAICVICSRINSKPNIVALSPCTRPL-GLDIDI---G 177
EKSI GSTT A+ C++ V IC R ++ P+ VAL P ++ + G
Sbjct: 285 EKSITGSTTLFSALLTKCLDRDVVPICRYIPRGSAAPSFVALLPQEEEYDDSNVQVTPPG 344
Query: 178 FDVIPLPFSENVRDLSSLFSDEIADTQTHK--KICSKI 285
F VI LPF++++R L E+++ Q K KI K+
Sbjct: 345 FHVIFLPFADDMRKLKYPKKPEVSEDQIEKAQKIIRKL 382
>SB_8334| Best HMM Match : MIB_HERC2 (HMM E-Value=0)
Length = 636
Score = 31.5 bits (68), Expect = 0.64
Identities = 22/77 (28%), Positives = 37/77 (48%)
Frame = +1
Query: 61 CIETKTVAICVICSRINSKPNIVALSPCTRPLGLDIDIGFDVIPLPFSENVRDLSSLFSD 240
C+ + V C++CS + P V PC L + D G D+ L S + L+SL
Sbjct: 490 CVSSSVVQECIVCSDV---PASVTFEPCAHKL-VCAD-GADLSLLTDSSSENSLTSL-QA 543
Query: 241 EIADTQTHKKICSKILL 291
++ + + IC K+L+
Sbjct: 544 KLQELEDKSHICLKLLV 560
>SB_44237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 334
Score = 31.1 bits (67), Expect = 0.84
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +3
Query: 366 AKALKQDDIEPFVDTTKPLNKIFNEIDGEQFYELFGPFGVTAVKRNSEQNQLIPNYKRLA 545
A + Q I +D K + F E+ E+F ++ + V + K + + + + R+A
Sbjct: 169 AHSCHQQSITSAIDKLKQCSLFFLEVQNEKFLQVKETYEVLSSKMDETFSHIYTHAVRMA 228
Query: 546 D-VNIDVLDPRVKDRKVNMYTVP 611
D +N PR+ R+V+ P
Sbjct: 229 DIINTAPSMPRLVGRQVHHVNAP 251
>SB_56731| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 29.5 bits (63), Expect = 2.6
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = +1
Query: 61 CIETKTVAICVICSRINSK 117
C++ KT+ +C++CS+I SK
Sbjct: 57 CVQRKTLVLCLVCSQILSK 75
>SB_18314| Best HMM Match : NUDIX (HMM E-Value=2e-05)
Length = 169
Score = 29.5 bits (63), Expect = 2.6
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = +1
Query: 61 CIETKTVAICVICSRINSK 117
C++ KT+ +C++CS+I SK
Sbjct: 22 CVQRKTLVLCLVCSQILSK 40
>SB_55898| Best HMM Match : Carb_anhydrase (HMM E-Value=3.6)
Length = 531
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/95 (21%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Frame = +3
Query: 315 PSMFENPKLQSLYRVIEAKALKQDDIEPFVDTTKPLNKIFNEIDGEQFYELFGPFG--VT 488
P +N +L+ + ++EA ++ D ++P + T P++ Y+ FG +
Sbjct: 434 PVFQQNAELEDVNELLEASLIRDDKVQPVIRETSPVH----------LYDRFGKWTPLEK 483
Query: 489 AVKRNSEQNQLIPNYKRLADVNIDVLDPRVKDRKV 593
+ + S+ ++++ + + +D +VL+ VK R V
Sbjct: 484 SPRTLSDDHRVLSDMQVFSDQLSNVLEEDVKSRVV 518
>SB_15469| Best HMM Match : RVT_1 (HMM E-Value=0.00014)
Length = 709
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = +3
Query: 228 SFFR*NSRYSDTQK--DMLKNIINNVKFNYTPSMFENPKLQS 347
SF++ N+ ++ Q+ DML IN +K + T +NP+L+S
Sbjct: 231 SFWKFNNSLTENQEYIDMLTTKINEIKSSLTIEGIDNPQLRS 272
>SB_14255| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 471 GPFGVTAVKRNSEQNQLIPNYKRLADVNIDVLDPRVKD 584
GP G +V R+ E+N L KR V+ D+ D +V +
Sbjct: 212 GPEGFESVVRSDEENVLTTMSKRFETVHADLTDLQVSN 249
>SB_2939| Best HMM Match : Ku (HMM E-Value=2.8e-07)
Length = 512
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +1
Query: 22 EGSTTALKAMHQACIETKTVAICVICSRINSKPNIVALSP 141
E ++ AL A A + TVAI C R N+ P + LSP
Sbjct: 199 EHASIALSAFINAMHRSDTVAIVRYCFRKNAAPKLGFLSP 238
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,604,394
Number of Sequences: 59808
Number of extensions: 388225
Number of successful extensions: 1403
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1403
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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