Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0243
         (671 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15004-1|AAC46492.1|  631|Drosophila melanogaster IRBP protein.        38   0.016
U05208-1|AAA20644.1|  631|Drosophila melanogaster yolk protein f...    38   0.016
AY071244-1|AAL48866.1|  535|Drosophila melanogaster RE28533p pro...    38   0.016
AE014297-1290|AAF54631.1|  631|Drosophila melanogaster CG5247-PA...    38   0.016
AE014296-2257|AAF49833.1| 1544|Drosophila melanogaster CG17687-P...    32   0.82 

>U15004-1|AAC46492.1|  631|Drosophila melanogaster IRBP protein.
          Length = 631

 Score = 37.5 bits (83), Expect = 0.016
 Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
 Frame = +1

Query: 7   EEKSIEGSTTALKAMHQACIETKTVAICVICSRINSKPNIVALSPCTRP-LGLDIDI--- 174
           +++SI GS    +A+ + C+    +AIC+   +  S P  VAL P   P  G D +    
Sbjct: 382 DDQSIIGSKRLFRALWERCLVRDKIAICLFMCKRKSIPRYVALVPVEAPDNGEDKNYRSL 441

Query: 175 ----GFDVIPLPFSENVRDLSSLFSDEIADTQTHKKI 273
               GF ++ LP ++++R L     +   +T   +K+
Sbjct: 442 LCGDGFKIVYLPEAKHIRHLDLQDWNNTENTADEQKV 478


>U05208-1|AAA20644.1|  631|Drosophila melanogaster yolk protein
           factor 1 beta subunit protein.
          Length = 631

 Score = 37.5 bits (83), Expect = 0.016
 Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
 Frame = +1

Query: 7   EEKSIEGSTTALKAMHQACIETKTVAICVICSRINSKPNIVALSPCTRP-LGLDIDI--- 174
           +++SI GS    +A+ + C+    +AIC+   +  S P  VAL P   P  G D +    
Sbjct: 382 DDQSIIGSKRLFRALWERCLVRDKIAICLFMCKRKSIPRYVALVPVEAPDNGEDKNYRSL 441

Query: 175 ----GFDVIPLPFSENVRDLSSLFSDEIADTQTHKKI 273
               GF ++ LP ++++R L     +   +T   +K+
Sbjct: 442 LCGDGFKIVYLPEAKHIRHLDLQDWNNTENTADEQKV 478


>AY071244-1|AAL48866.1|  535|Drosophila melanogaster RE28533p
           protein.
          Length = 535

 Score = 37.5 bits (83), Expect = 0.016
 Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
 Frame = +1

Query: 7   EEKSIEGSTTALKAMHQACIETKTVAICVICSRINSKPNIVALSPCTRP-LGLDIDI--- 174
           +++SI GS    +A+ + C+    +AIC+   +  S P  VAL P   P  G D +    
Sbjct: 286 DDQSIIGSKRLFRALWERCLVRDKIAICLFMCKRKSIPRYVALVPVEAPDNGEDKNYRSL 345

Query: 175 ----GFDVIPLPFSENVRDLSSLFSDEIADTQTHKKI 273
               GF ++ LP ++++R L     +   +T   +K+
Sbjct: 346 LCGDGFKIVYLPEAKHIRHLDLQDWNNTENTADEQKV 382


>AE014297-1290|AAF54631.1|  631|Drosophila melanogaster CG5247-PA
           protein.
          Length = 631

 Score = 37.5 bits (83), Expect = 0.016
 Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
 Frame = +1

Query: 7   EEKSIEGSTTALKAMHQACIETKTVAICVICSRINSKPNIVALSPCTRP-LGLDIDI--- 174
           +++SI GS    +A+ + C+    +AIC+   +  S P  VAL P   P  G D +    
Sbjct: 382 DDQSIIGSKRLFRALWERCLVRDKIAICLFMCKRKSIPRYVALVPVEAPDNGEDKNYRSL 441

Query: 175 ----GFDVIPLPFSENVRDLSSLFSDEIADTQTHKKI 273
               GF ++ LP ++++R L     +   +T   +K+
Sbjct: 442 LCGDGFKIVYLPEAKHIRHLDLQDWNNTENTADEQKV 478


>AE014296-2257|AAF49833.1| 1544|Drosophila melanogaster CG17687-PA
            protein.
          Length = 1544

 Score = 31.9 bits (69), Expect = 0.82
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
 Frame = +3

Query: 279  KNII-NNVKFNYTPSM---FENPKLQSLYRVI-EAKALKQDDIEPFVDTTKPLNKIFNEI 443
            KN++ +N  FNY   +     +P  Q   ++  EA+ LKQD I+  ++T   LNKI++ +
Sbjct: 862  KNLVTSNQLFNYNCKIRFYLNDPLKQEFNKLFHEAQQLKQDTIDSVMNTNVVLNKIYDNM 921

Query: 444  D 446
            +
Sbjct: 922  N 922


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,215,959
Number of Sequences: 53049
Number of extensions: 568025
Number of successful extensions: 1285
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1285
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2910007350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)