Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0243
         (671 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117202-3|CAB55094.2|  691|Caenorhabditis elegans Hypothetical ...    36   0.026
AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched famil...    31   0.75 
AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched famil...    31   0.75 
U13876-2|AAM48539.1|  373|Caenorhabditis elegans Hypothetical pr...    31   0.99 
U13876-1|AAM48538.1|  353|Caenorhabditis elegans Hypothetical pr...    31   0.99 
U97407-1|AAB52478.2|  411|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AL023827-2|CAA19445.1|   75|Caenorhabditis elegans Hypothetical ...    27   9.2  

>AL117202-3|CAB55094.2|  691|Caenorhabditis elegans Hypothetical
           protein Y47D3A.4 protein.
          Length = 691

 Score = 35.9 bits (79), Expect = 0.026
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
 Frame = +3

Query: 255 SDTQKDMLKNIINNVKFNYTPSMFENPKLQS------LYRVIEAKALKQDDIEPFVDTTK 416
           ++ Q + +K  +  +  +Y PS +ENP+L S      L    E    ++D +EP+    K
Sbjct: 523 TEEQVNTMKQFVKRLTMSYNPSFYENPRLLSERSALCLEATGEELIERRDTLEPYYQIPK 582

Query: 417 PLNKIFNEID 446
            L ++  EI+
Sbjct: 583 RLQRVGTEIE 592


>AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched family
           protein 3, isoform b protein.
          Length = 1361

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
 Frame = -2

Query: 424 FSGFVVSTKGSMSSCFNAFASITLYNDCNLGFSNMLGV*LN--FTLLIIFLSISFCVSE- 254
           F G+ ++ + +++        +T+ + C LGF+  LG+  N   T ++ FLS+   + + 
Sbjct: 640 FQGWWLAVQSNVALAICGVILVTISSICGLGFATHLGINFNAATTQVVPFLSLGLGIDDM 699

Query: 253 YLLFH 239
           +LL H
Sbjct: 700 FLLLH 704


>AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched family
           protein 3, isoform a protein.
          Length = 1358

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
 Frame = -2

Query: 424 FSGFVVSTKGSMSSCFNAFASITLYNDCNLGFSNMLGV*LN--FTLLIIFLSISFCVSE- 254
           F G+ ++ + +++        +T+ + C LGF+  LG+  N   T ++ FLS+   + + 
Sbjct: 640 FQGWWLAVQSNVALAICGVILVTISSICGLGFATHLGINFNAATTQVVPFLSLGLGIDDM 699

Query: 253 YLLFH 239
           +LL H
Sbjct: 700 FLLLH 704


>U13876-2|AAM48539.1|  373|Caenorhabditis elegans Hypothetical
           protein F57B9.7b protein.
          Length = 373

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 315 PSMFENPKLQSLYRVIEAKALKQDDIEPFVDTTKPLNKIFNEID 446
           P +F+   ++ + RV+   A   D I+  VDT K + K + E++
Sbjct: 206 PYLFKRETIRLVDRVVPGAASLDDKIQKLVDTNKKMRKDYEELE 249


>U13876-1|AAM48538.1|  353|Caenorhabditis elegans Hypothetical
           protein F57B9.7a protein.
          Length = 353

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 315 PSMFENPKLQSLYRVIEAKALKQDDIEPFVDTTKPLNKIFNEID 446
           P +F+   ++ + RV+   A   D I+  VDT K + K + E++
Sbjct: 186 PYLFKRETIRLVDRVVPGAASLDDKIQKLVDTNKKMRKDYEELE 229


>U97407-1|AAB52478.2|  411|Caenorhabditis elegans Hypothetical
           protein C34G6.5 protein.
          Length = 411

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -2

Query: 304 NFTLLIIFLSISFCVSEYLLFHLKKDLRDPLHFLKMVMV*HQIQYLYLN 158
           N ++ I+      C +  LLFH K+DL   L + + ++  + + YL+ N
Sbjct: 94  NGSVAIVLEHFPHCTATELLFHSKRDLSFALSYFRNLL--YAVAYLHHN 140


>AL023827-2|CAA19445.1|   75|Caenorhabditis elegans Hypothetical
           protein Y12A6A.2 protein.
          Length = 75

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = -3

Query: 132 SHYVRFRIYSRTNHTNSY 79
           S YVRF I S  NH NSY
Sbjct: 24  SDYVRFLIQSARNHENSY 41


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,084,261
Number of Sequences: 27780
Number of extensions: 317928
Number of successful extensions: 943
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)