Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0243
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   3.5  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              22   6.1  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   6.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.1  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +3

Query: 426 KIFNEIDGEQFYELFGPFGVTAVKRNSEQNQLIPNYK 536
           + F E DG+  +E FG F    V + +      P Y+
Sbjct: 256 RFFEEKDGQVLWEGFGDFQPVHVHKQTAIAFRTPTYR 292


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +3

Query: 426 KIFNEIDGEQFYELFGPFGVTAVKRNSEQNQLIPNYK 536
           + F E DG+  +E FG F    V + +      P Y+
Sbjct: 256 RFFEEKDGQVLWEGFGDFQPVHVHKQTAIAFRTPTYR 292


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +3

Query: 375 LKQDDIEPFVDTTKPLNKIFNEIDGE-QFYELFGPFGVTAVKRNSEQNQLIPNYKRLADV 551
           ++ ++++ +V+    + K FN +D    F E      V AV  ++E +QLI     ++D 
Sbjct: 54  VEDENVQSYVEC---MMKKFNVVDENGNFNEKNTRDIVQAVLDDNETDQLIVECSPISDA 110

Query: 552 NIDV 563
           N+ +
Sbjct: 111 NVHI 114


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 543 PVFCSLVLAGFVHYFF*LRLLRM 475
           P F +LVLAG   +F  L L +M
Sbjct: 22  PYFLTLVLAGIPMFFMELALGQM 44


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 647 WLPNVSSISLKLGYSIHIYFS 585
           WL  +SS+    GY I+I+F+
Sbjct: 533 WLCGLSSMLCIPGYMIYIWFT 553


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 647 WLPNVSSISLKLGYSIHIYFS 585
           WL  +SS+    GY I+I+F+
Sbjct: 586 WLCGLSSMLCIPGYMIYIWFT 606


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,700
Number of Sequences: 438
Number of extensions: 3870
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)