Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0243
         (671 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g16970.1 68414.m02061 Ku70-like protein identical to Ku70-lik...    32   0.40 
At4g25850.1 68417.m03718 oxysterol-binding family protein contai...    28   4.9  
At3g19180.1 68416.m02435 cell division protein-related weak simi...    28   4.9  
At4g36050.2 68417.m05132 endonuclease/exonuclease/phosphatase fa...    28   6.5  
At4g36050.1 68417.m05131 endonuclease/exonuclease/phosphatase fa...    28   6.5  
At4g25860.1 68417.m03719 oxysterol-binding family protein contai...    27   8.6  
At1g62360.1 68414.m07036 homeobox protein SHOOT MERISTEMLESS (ST...    27   8.6  
At1g12220.1 68414.m01414 disease resistance protein RPS5 (CC-NBS...    27   8.6  

>At1g16970.1 68414.m02061 Ku70-like protein identical to Ku70-like
           protein GI:12006424 from [Arabidopsis thaliana];
           contains Pfam profiles PF03731: Ku70/Ku80 N-terminal
           alpha/beta domain, PF02735: Ku70/Ku80 beta-barrel
           domain, PF03730: Ku70/Ku80 C-terminal arm, and PF02037:
           SAP domain; contains TIGRfam profile TIGR00578:
           ATP-dependent DNA helicase ii, 70 kDa subunit
          Length = 621

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
 Frame = +1

Query: 10  EKSIEGSTTALKAMHQACIETKTVAICVICSRINSKPNIVAL---SPCTRPLGLDIDIGF 180
           +K + GST A  A+H++ I+ +  A+        + P +VAL          G     G 
Sbjct: 382 DKEVIGSTRAFIALHRSMIQLERFAVAFYGG--TTPPRLVALVAQDEIESDGGQVEPPGI 439

Query: 181 DVIPLPFSENVRDLSSLFS 237
           ++I LP++ ++RD+  L S
Sbjct: 440 NMIYLPYANDIRDIDELHS 458


>At4g25850.1 68417.m03718 oxysterol-binding family protein contains
           Pfam profile PF01237: Oxysterol-binding protein
          Length = 383

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +3

Query: 426 KIFNEIDGEQFYELFGPFGVTAVKRNSEQNQLIPNYKRLADVNIDVLDP 572
           KIF    G Q Y +FG +  T + +N +  +L   Y   A  NI  L P
Sbjct: 248 KIFESSSGNQLYNIFGHWDRTVMAKNIKTGELEVIYN--AKENITGLKP 294


>At3g19180.1 68416.m02435 cell division protein-related weak
           similarity to cell division protein Ftn2 [Synechococcus
           sp. PCC 7942] GI:16226084
          Length = 819

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +3

Query: 204 RKCKGSLKSFFR*NSRYSDTQKDMLKNIINNVKFNYTP---SMFENPKLQSLYRVIE 365
           R C  SL +FFR   +Y + +K    +I+N+ K N  P   + F N   Q LY  +E
Sbjct: 471 RGCSPSLANFFRAEKKYPENKKMGSPSIMNH-KTNQRPLSTTQFVNSS-QHLYTAVE 525


>At4g36050.2 68417.m05132 endonuclease/exonuclease/phosphatase
           family protein
          Length = 609

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 21  RRFYNCSQGNAPSMY*NKNCSY 86
           RRFY CS+   PS     NC Y
Sbjct: 577 RRFYVCSRAEGPSSNPEANCGY 598


>At4g36050.1 68417.m05131 endonuclease/exonuclease/phosphatase
           family protein
          Length = 408

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 21  RRFYNCSQGNAPSMY*NKNCSY 86
           RRFY CS+   PS     NC Y
Sbjct: 376 RRFYVCSRAEGPSSNPEANCGY 397


>At4g25860.1 68417.m03719 oxysterol-binding family protein contains
           Pfam profile PF01237: Oxysterol-binding protein
          Length = 386

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +3

Query: 426 KIFNEIDGEQFYELFGPFGVTAVKRNSEQNQLIPNYKRLADVNIDVLDP 572
           KIF    G Q Y +FG +  T + +N +   L   Y   A+ NI  L P
Sbjct: 249 KIFESSSGNQLYNIFGHWDRTVMAKNLKTGGLEVIYN--ANENITGLKP 295


>At1g62360.1 68414.m07036 homeobox protein SHOOT MERISTEMLESS (STM)
           identical to homeobox protein SHOOT MERISTEMLESS (STM)
           SP:Q38874 from [Arabidopsis thaliana]
          Length = 382

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/59 (23%), Positives = 32/59 (54%)
 Frame = +3

Query: 468 FGPFGVTAVKRNSEQNQLIPNYKRLADVNIDVLDPRVKDRKVNMYTVPQL*RYTGNIRK 644
           F  +G TA+ RN+  +      +   D+N + +DP+ +DR++    + +   Y G++++
Sbjct: 227 FSGYGETAIDRNNNGSS-----EEEVDMNNEFVDPQAEDRELKGQLLRKYSGYLGSLKQ 280


>At1g12220.1 68414.m01414 disease resistance protein RPS5
           (CC-NBS-LRR class) / resistance to Pseudomonas syringae
           protein 5 (CC-NBS-LRR class) domain signature CC-NBS-LRR
           exists, suggestive of a disease resistance protein.
           Identical to RPS5 (resistance to Pseudomonas syringae
           protein 5)(gi:3309620)
          Length = 889

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 119 GLEFILEQITQIATVFVSIHAWCIALRAVVEPSIDFS 9
           GL   L  I +      ++H WC A+  +   +IDFS
Sbjct: 350 GLPLALNVIGEAMACKRTVHEWCHAIDVLTSSAIDFS 386


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,918,898
Number of Sequences: 28952
Number of extensions: 282757
Number of successful extensions: 723
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)