Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0242
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    29   0.64 
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    27   2.6  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    26   4.5  

>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -1

Query: 383 VVDVYELR*PRCNKKYLYKVGRDESVSAQRRSRRLTPTRGSAAGQVLARS-RGRRSPS 213
           +VDVYEL    C+K Y+++  +D +    +    L  +  S      ARS +G  +PS
Sbjct: 166 MVDVYELGYTECSKSYVFRGSKDYTSKQIQEMLGLPTSNVSPVALQQARSFQGSAAPS 223


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 573 HFVIFYYLISVVCYLNDN 626
           H VIF+Y + +V +LN N
Sbjct: 230 HVVIFHYYLGIVAFLNQN 247


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +3

Query: 42  YVRACVRACECVTRA--ARPGRLHRVQRERYYNLHSRVYIPPLTVR-DIVNIYSDS 200
           ++ AC+ A   +  A  A P  L  +  +RYY LHS   I  + V   +V I+S S
Sbjct: 317 FLTACISALYILFGAFVALPSTLRALVEQRYYTLHSIYKIFRIMVLCGVVTIFSFS 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,635,163
Number of Sequences: 5004
Number of extensions: 50450
Number of successful extensions: 155
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)