Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0242
(695 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0334 + 16779883-16780150,16780618-16781828 31 1.2
08_01_0387 - 3426058-3426168,3426279-3426473,3426612-3426724,342... 31 1.2
08_02_0707 - 20212190-20214592 29 2.7
06_02_0048 - 10943553-10944050 29 3.5
05_01_0029 + 187769-188707,188971-189246,189978-190174,190263-19... 29 3.5
04_04_0933 + 29495656-29496972,29497244-29497819,29499414-294996... 29 4.7
06_03_1455 + 30264023-30264174,30265930-30266070,30266328-302664... 28 8.1
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 28 8.1
03_01_0210 + 1652040-1652186,1652446-1652853 28 8.1
02_01_0073 - 509377-509425,510200-510270,510420-510539,510684-51... 28 8.1
>09_04_0334 + 16779883-16780150,16780618-16781828
Length = 492
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +3
Query: 33 ARTYVRACVRACECVTRAARPGRLHRVQRERYYNLHSRVYIPPLTVRDIV 182
A T VRA V+ C V +ARPG++ R+ + + SR ++PP D++
Sbjct: 82 ANTAVRAAVKRCAEVPISARPGKMMRIAIKSW----SR-FLPPYIPDDVI 126
>08_01_0387 -
3426058-3426168,3426279-3426473,3426612-3426724,
3427121-3427157,3427270-3427341,3427849-3427962,
3428129-3428200,3428343-3428381,3429340-3429414,
3429561-3429674,3429749-3429813,3429927-3430047,
3430942-3431063,3431547-3431634
Length = 445
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = -1
Query: 317 DESVSAQRRSRRLTPTRGSAAGQVLARSRGRRSPSGVAARVAVDI--YNISYCQRGDIN 147
D +SAQR+SR + PT+G A R++G + + ++V + Y ++ +R D++
Sbjct: 94 DILMSAQRKSRNVPPTKGIANIAKRERNKGAKQLDALMKEISVPLRTYTENFPKRRDLH 152
>08_02_0707 - 20212190-20214592
Length = 800
Score = 29.5 bits (63), Expect = 2.7
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = -2
Query: 76 THSHARTHARTYVRARTHSHTH 11
+HSH+ +H+ ++ + +HSH H
Sbjct: 497 SHSHSHSHSHSHSHSHSHSHVH 518
>06_02_0048 - 10943553-10944050
Length = 165
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = -1
Query: 296 RRSRRLTPTRGSAAGQVLARSRGRR 222
RR RL RG GQ+ A SRGRR
Sbjct: 64 RRLSRLDAKRGRLEGQIAAASRGRR 88
>05_01_0029 +
187769-188707,188971-189246,189978-190174,190263-190404,
190584-190862,190941-191013,191331-191379,192169-192433,
192576-192631,192777-192845,193028-193139,193682-193771,
193955-194125,194449-194506,194970-195128,195379-195401
Length = 985
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +1
Query: 481 HGRNRRSGGTTNPCGLP 531
HGRN R GG NP G P
Sbjct: 918 HGRNFRKGGNNNPVGWP 934
>04_04_0933 +
29495656-29496972,29497244-29497819,29499414-29499650,
29499736-29500048,29500191-29500300
Length = 850
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = +1
Query: 445 APPPSN--RNALLLHG-RNRRSGGTTNPCGLPRLTT 543
APPPS+ R+ L G RNRR +NP PR T+
Sbjct: 2 APPPSSLLRDLLAADGFRNRRKPPDSNPPAAPRTTS 37
>06_03_1455 +
30264023-30264174,30265930-30266070,30266328-30266430,
30266510-30266659,30267184-30267229,30267383-30267738
Length = 315
Score = 27.9 bits (59), Expect = 8.1
Identities = 31/91 (34%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Frame = -1
Query: 467 FRFEGGGAAVVTILRPYNSYLKVGGGIYVVDVYELR*PRCNKKYLYKV--GRDESVSAQR 294
F EG + +L P+ + G +D E RC K V GR+ +V R
Sbjct: 127 FSKEGRVTSCHVVLEPHTRVSR-GFAFVTMDTVEDA-ERCIKYLNQSVMEGRNITVEKSR 184
Query: 293 RSRRLTPTRGSAAGQVLAR--SRGR-RSPSG 210
R R TPT GS G R RGR RS G
Sbjct: 185 RGRPRTPTPGSYLGHRYDRREPRGRYRSRGG 215
>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
34512493-34513964,34514114-34514377,34514761-34514978,
34515759-34516030,34516190-34516559,34516578-34516797,
34516819-34518931,34518941-34519193,34519269-34519401,
34520597-34521114,34521207-34522115,34522195-34522368,
34522833-34522882,34523963-34524035,34524413-34524477,
34524736-34525522,34525622-34525878,34525989-34526109,
34526315-34526956
Length = 5320
Score = 27.9 bits (59), Expect = 8.1
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 495 AEWWYYQPVRTPKT 536
+ WWY+QP R P T
Sbjct: 5127 SNWWYWQPFRAPAT 5140
>03_01_0210 + 1652040-1652186,1652446-1652853
Length = 184
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 103 KRPGRAARVTHSHARTHARTYVRARTHS 20
KRP + + SHA THART + S
Sbjct: 52 KRPTKPTKAQTSHAATHARTLYESSVES 79
>02_01_0073 -
509377-509425,510200-510270,510420-510539,510684-510769,
510843-510915,510996-511718,513752-514081,514124-514210,
514494-515250,515336-515399,515477-515609,515702-515801,
515952-516088,516195-516341,516428-516478,517083-517148
Length = 997
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 341 KYLYKVGRDESVSAQRRSRRLTPTRGSAAGQV 246
K + VG ES QRRSRR SA G++
Sbjct: 768 KSSHGVGSSESSDCQRRSRRRDACSSSATGEI 799
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,889,373
Number of Sequences: 37544
Number of extensions: 388928
Number of successful extensions: 1166
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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