Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0242
(695 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3153| Best HMM Match : PAN (HMM E-Value=0.0028) 41 0.001
SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091) 31 0.67
SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.89
SB_2943| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.89
SB_18591| Best HMM Match : Mfp-3 (HMM E-Value=9.6) 30 2.1
SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011) 29 3.6
SB_26061| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_48924| Best HMM Match : 7tm_2 (HMM E-Value=1.5e-16) 29 4.8
SB_46971| Best HMM Match : EspF (HMM E-Value=3.1) 29 4.8
SB_20775| Best HMM Match : Somatomedin_B (HMM E-Value=7.7e-05) 29 4.8
SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_29945| Best HMM Match : DUF125 (HMM E-Value=1.7) 24 7.1
>SB_3153| Best HMM Match : PAN (HMM E-Value=0.0028)
Length = 285
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = -2
Query: 79 VTHSHARTHARTYVRARTHSHTHT 8
+TH+ ARTHART+ ARTH+HTHT
Sbjct: 259 ITHTQARTHARTH--ARTHAHTHT 280
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = -2
Query: 70 SHARTHARTYVRARTHSHT 14
+HARTHART+ A TH++T
Sbjct: 266 THARTHARTH--AHTHTYT 282
>SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)
Length = 761
Score = 31.5 bits (68), Expect = 0.67
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = -2
Query: 124 RSR*TRCKRPGRAARVTHSHARTHARTYVRARTHSHTHTRA 2
RSR R + P R+ + SH R+ +R++ R+R+ SHT +R+
Sbjct: 417 RSR-IRSRSPARSR--SWSHTRSRSRSHTRSRSRSHTRSRS 454
>SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 673
Score = 31.1 bits (67), Expect = 0.89
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -1
Query: 317 DESVSAQRRSRRLTPTRGSAAGQVLARSRGRRSPSGVAAR 198
DE+++ +R S T T+GS AG R + + SGV R
Sbjct: 501 DEAINGRRHSNEETATKGSTAGSGAVLLRSQPASSGVGDR 540
>SB_2943| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 77
Score = 31.1 bits (67), Expect = 0.89
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 7/28 (25%)
Frame = -2
Query: 73 HSHARTHARTYV-------RARTHSHTH 11
H+HARTH T V ARTH+HTH
Sbjct: 10 HAHARTHTNTKVVTVARVAHARTHAHTH 37
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = -2
Query: 88 AARVTHSHARTHARTYVRARTHSHT 14
+AR T +H THART+ ARTH++T
Sbjct: 45 SARRTRTH--THARTHTHARTHTNT 67
>SB_18591| Best HMM Match : Mfp-3 (HMM E-Value=9.6)
Length = 189
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 82 RVTHSHARTHARTYVRARTHSHTH 11
R TH+ R +ART+ R H+H H
Sbjct: 143 RSTHTRTRPNARTHRHTRAHAHIH 166
>SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)
Length = 734
Score = 29.1 bits (62), Expect = 3.6
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = -2
Query: 79 VTHSHARTHARTYVRARTHSHTHTRA 2
+ H+H+ +H ++ R H+H+H+ A
Sbjct: 244 IIHTHSPSHTLSFTRTLIHTHSHSHA 269
Score = 29.1 bits (62), Expect = 3.6
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2
Query: 79 VTHSHARTHARTYVRARTHSHTHT 8
V H+H+ HA ++ R H+H+H+
Sbjct: 362 VIHTHSHPHALSFTRTIIHTHSHS 385
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 76 THSHARTHARTYVRARTHSHTH 11
THSH + T+ RTHSH+H
Sbjct: 316 THSHPHSLLFTFTIIRTHSHSH 337
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 97 PGRAARVTHSHARTHARTYVRARTHSHT 14
PG + HSHA + RT + + SHT
Sbjct: 226 PGTKMSIYHSHALSFTRTIIHTHSPSHT 253
Score = 27.9 bits (59), Expect = 8.3
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -2
Query: 73 HSHARTHARTYVRARTHSHTH 11
H+H+ +HA + R H+H+H
Sbjct: 262 HTHSHSHALLFTRTLIHTHSH 282
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 76 THSHARTHARTYVRARTHSHTH 11
THSH+ + T+ THSH+H
Sbjct: 332 THSHSHALSFTHTLIHTHSHSH 353
>SB_26061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 86
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 76 THSHARTHARTYVRARTHSHTHTRA 2
T++H TH +V ART++H H +
Sbjct: 10 TYTHILTHNHAHVHARTNTHMHANS 34
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 73 HSHARTHARTYVRARTHSHTHTRA 2
H+HA ++ RTY TH+H H A
Sbjct: 2 HTHASSN-RTYTHILTHNHAHVHA 24
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 79 VTHSHARTHARTYVRARTHSHTHTR 5
+TH+HA HART TH H ++R
Sbjct: 15 LTHNHAHVHART----NTHMHANSR 35
>SB_48924| Best HMM Match : 7tm_2 (HMM E-Value=1.5e-16)
Length = 736
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Frame = -1
Query: 347 NKKYLYK------VGRDESVSAQRRSRRLTPTRGSAAGQVLARSRGRRSPSGV 207
NKK ++K + R+++ +A RSRR P+ SA L R + SPS V
Sbjct: 69 NKKRIFKEEIPFAIVRNDTETATLRSRREIPSNASAVNSSLHRFASKVSPSPV 121
>SB_46971| Best HMM Match : EspF (HMM E-Value=3.1)
Length = 224
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 76 THSHARTHARTYVRARTHSHTHTR 5
T SH T R +V RT SH TR
Sbjct: 149 TRSHVATRTRAHVATRTRSHVATR 172
>SB_20775| Best HMM Match : Somatomedin_B (HMM E-Value=7.7e-05)
Length = 375
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Frame = -1
Query: 347 NKKYLYK------VGRDESVSAQRRSRRLTPTRGSAAGQVLARSRGRRSPSGV 207
NKK ++K + R+++ +A RSRR P+ SA L R + SPS V
Sbjct: 69 NKKRIFKEEIPFAIVRNDTETATLRSRREIPSNASAVNSSLHRFASKVSPSPV 121
>SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1414
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -1
Query: 320 RDESVSAQRRSRRLTPTRGSAAGQVLARSRGR-RSPSGVAAR 198
R E + R RR RGS+ + + RGR R+P G A R
Sbjct: 396 RAEEARSAERGRRREGERGSSGPRTPSPDRGRQRTPEGAAGR 437
>SB_29945| Best HMM Match : DUF125 (HMM E-Value=1.7)
Length = 608
Score = 24.2 bits (50), Expect(2) = 7.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -2
Query: 76 THSHARTHARTYVRARTHSHTHTR 5
TH+ HA+ RA TH+ H R
Sbjct: 304 THTRRHMHAQKARRAVTHADMHAR 327
Score = 22.2 bits (45), Expect(2) = 7.1
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 94 GRAARVTHSHARTHA 50
GRA T +HAR HA
Sbjct: 250 GRARAQTRTHARRHA 264
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,442,056
Number of Sequences: 59808
Number of extensions: 435600
Number of successful extensions: 1404
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1387
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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