Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0242
(695 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK000755-1|BAA91361.1| 147|Homo sapiens protein ( Homo sapiens ... 37 0.060
AK096940-1|BAC04906.1| 226|Homo sapiens protein ( Homo sapiens ... 36 0.10
AK128083-1|BAC87264.1| 225|Homo sapiens protein ( Homo sapiens ... 35 0.24
AK127601-1|BAC87052.1| 415|Homo sapiens protein ( Homo sapiens ... 33 0.74
AK126884-1|BAC86735.1| 175|Homo sapiens protein ( Homo sapiens ... 33 1.3
M23115-1|AAA53194.1| 997|Homo sapiens HK2 protein. 32 2.2
M23114-1|AAA53193.1| 1042|Homo sapiens HK1 protein. 32 2.2
BC035588-1|AAH35588.1| 1042|Homo sapiens ATPase, Ca++ transporti... 32 2.2
AK127759-1|BAC87117.1| 294|Homo sapiens r (EC 1.6.5.3). protein. 32 2.2
AK091508-1|BAC03679.1| 239|Homo sapiens protein ( Homo sapiens ... 31 3.9
U53209-1|AAC50658.1| 282|Homo sapiens transformer-2 alpha protein. 31 5.2
BC017094-1|AAH17094.1| 282|Homo sapiens transformer-2 alpha pro... 31 5.2
AK124627-1|BAC85906.1| 175|Homo sapiens protein ( Homo sapiens ... 31 5.2
AK057435-1|BAB71485.1| 170|Homo sapiens protein ( Homo sapiens ... 31 5.2
AC023105-1|AAQ96870.1| 282|Homo sapiens unknown protein. 31 5.2
AB097048-1|BAC77401.1| 282|Homo sapiens putative MAPK activatin... 31 5.2
U66060-17|AAC13334.1| 115|Homo sapiens V_segment translation pr... 30 6.9
U03115-3|AAA17711.1| 113|Homo sapiens T-cell receptor beta chai... 30 6.9
AK123631-1|BAC85667.1| 207|Homo sapiens protein ( Homo sapiens ... 30 6.9
AF009663-19|AAB63913.1| 115|Homo sapiens TCRBV12S1 protein. 30 6.9
AF009661-3|AAB63897.1| 115|Homo sapiens TCRBV12S1 protein. 30 6.9
U17047-1|AAA97536.1| 95|Homo sapiens T cell receptor beta, var... 30 9.1
S65359-1|AAB28185.1| 91|Homo sapiens T cell antigen receptor b... 30 9.1
M14268-1|AAA60694.1| 130|Homo sapiens T-cell receptor beta chai... 30 9.1
M13862-1|AAA61019.1| 103|Homo sapiens TCRB protein. 30 9.1
L33102-1|AAB59454.1| 91|Homo sapiens T-cell receptor beta-chai... 30 9.1
L33101-1|AAB59453.1| 91|Homo sapiens T-cell receptor beta-chai... 30 9.1
L33100-1|AAB59452.1| 91|Homo sapiens T-cell receptor beta-chai... 30 9.1
AJ389947-1|CAB59369.1| 88|Homo sapiens T cell receptor beta ch... 30 9.1
>AK000755-1|BAA91361.1| 147|Homo sapiens protein ( Homo sapiens
cDNA FLJ20748 fis, clone HEP05772. ).
Length = 147
Score = 37.1 bits (82), Expect = 0.060
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = -2
Query: 94 GRAARVTHSHARTHARTYVRARTHSHTH 11
G+ A TH+H TH RT AR H+HTH
Sbjct: 82 GKCAH-THTHTHTHTRTCTHARMHTHTH 108
>AK096940-1|BAC04906.1| 226|Homo sapiens protein ( Homo sapiens
cDNA FLJ39621 fis, clone SMINT2001158. ).
Length = 226
Score = 36.3 bits (80), Expect = 0.10
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2
Query: 76 THSHARTHARTYVRARTHSHTH 11
TH+HA TH+ T++ HSHTH
Sbjct: 169 THTHALTHSHTHIHTHMHSHTH 190
Score = 32.3 bits (70), Expect = 1.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 91 RAARVTHSHARTHARTYVRARTHSHTH 11
+ + VTH+H+ THA + T +HTH
Sbjct: 122 QTSTVTHTHSHTHAHKHTYTHTSTHTH 148
Score = 32.3 bits (70), Expect = 1.7
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 76 THSHARTHARTYVRARTHSHTH 11
TH H+ TH T+ TH HTH
Sbjct: 183 THMHSHTHPLTHTSTHTHPHTH 204
Score = 31.1 bits (67), Expect = 3.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 73 HSHARTHARTYVRARTHSHTHT 8
HSH+ THA + HSHTH+
Sbjct: 82 HSHSFTHAHMHSHTHIHSHTHS 103
Score = 30.7 bits (66), Expect = 5.2
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -2
Query: 76 THSHARTHARTYVRARTHSHTHT 8
THSH H TY TH+H T
Sbjct: 129 THSHTHAHKHTYTHTSTHTHPLT 151
Score = 30.3 bits (65), Expect = 6.9
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -2
Query: 97 PGRAARVTHSHART--HARTYVRARTHSHTH 11
P +TH+H T H+ ++ A HSHTH
Sbjct: 66 PLTVTHITHTHLLTHIHSHSFTHAHMHSHTH 96
Score = 30.3 bits (65), Expect = 6.9
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -2
Query: 70 SHARTHARTYVRARTHSHTHT 8
+HA H+ T++ + THSH H+
Sbjct: 87 THAHMHSHTHIHSHTHSHIHS 107
>AK128083-1|BAC87264.1| 225|Homo sapiens protein ( Homo sapiens
cDNA FLJ46204 fis, clone TESTI4009501. ).
Length = 225
Score = 35.1 bits (77), Expect = 0.24
Identities = 16/26 (61%), Positives = 18/26 (69%)
Frame = -2
Query: 79 VTHSHARTHARTYVRARTHSHTHTRA 2
+T SH THA T+ A TH HTHTRA
Sbjct: 110 LTLSHMHTHAHTH--AHTHGHTHTRA 133
Score = 34.3 bits (75), Expect = 0.42
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -2
Query: 73 HSHARTHARTYVRAR-THSHTHTRA 2
H+HA TH T+ RA TH+HTH +
Sbjct: 120 HTHAHTHGHTHTRAHSTHAHTHAHS 144
Score = 29.9 bits (64), Expect = 9.1
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -2
Query: 91 RAARVTHSHARTHARTYVRARTHSHTHT 8
R +THSHA H+ T TH HTHT
Sbjct: 149 RTLTLTHSHA--HSCTLTSTITHMHTHT 174
Score = 29.9 bits (64), Expect = 9.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 76 THSHARTHARTYVRARTHSHTH 11
TH+H TH T R T +HTH
Sbjct: 174 THTHMHTHTSTLTRTLTLTHTH 195
>AK127601-1|BAC87052.1| 415|Homo sapiens protein ( Homo sapiens
cDNA FLJ45698 fis, clone FEBRA2017811. ).
Length = 415
Score = 33.5 bits (73), Expect = 0.74
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 76 THSHARTHARTYVRARTHSHTHT 8
TH+H H T+ R TH HTHT
Sbjct: 187 THTHIHIHMPTHTRTYTHMHTHT 209
Score = 32.7 bits (71), Expect = 1.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 76 THSHARTHARTYVRARTHSHTHT 8
TH H T+ RTY++ H+H HT
Sbjct: 85 THIHTCTYKRTYIQGHIHTHMHT 107
Score = 31.5 bits (68), Expect = 3.0
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 76 THSHARTHARTYVRARTHSHTHT 8
+H+H TH ++ H+HTHT
Sbjct: 285 SHAHINTHTHAHIHMHMHTHTHT 307
Score = 31.1 bits (67), Expect = 3.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 76 THSHARTHARTYVRARTHSHTHT 8
TH+H THA ++ T+ HT+T
Sbjct: 305 THTHTYTHAHAHIHINTYMHTYT 327
Score = 31.1 bits (67), Expect = 3.9
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -2
Query: 76 THSHARTHARTYVRARTHSHTHT 8
TH H TH YV TH HT T
Sbjct: 345 THIHTHTHIHIYVYTHTHMHTPT 367
Score = 30.7 bits (66), Expect = 5.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 76 THSHARTHARTYVRARTHSHTHTRA 2
TH+HA H + TH++TH A
Sbjct: 291 THTHAHIHMHMHTHTHTHTYTHAHA 315
Score = 30.3 bits (65), Expect = 6.9
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 76 THSHARTHARTYVRARTHSHTHT 8
TH+H THA +V H H HT
Sbjct: 239 THAHTYTHAHIHVCTHIHMHIHT 261
Score = 30.3 bits (65), Expect = 6.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -2
Query: 76 THSHARTHARTYVRARTHSHTHT 8
TH H+ H T+ A H H HT
Sbjct: 281 THMHSHAHINTHTHAHIHMHMHT 303
Score = 30.3 bits (65), Expect = 6.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 73 HSHARTHARTYVRARTHSHTHT 8
H + THA ++ TH+HTHT
Sbjct: 288 HINTHTHAHIHMHMHTHTHTHT 309
Score = 29.9 bits (64), Expect = 9.1
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2
Query: 67 HARTHARTYVRARTHSHTH 11
H TH TY A TH+H H
Sbjct: 100 HIHTHMHTYTHAHTHAHIH 118
Score = 29.9 bits (64), Expect = 9.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 73 HSHARTHARTYVRARTHSHTH 11
H++ H+ TY+ TH HTH
Sbjct: 374 HTYTYAHSHTYIHMHTHIHTH 394
>AK126884-1|BAC86735.1| 175|Homo sapiens protein ( Homo sapiens
cDNA FLJ44936 fis, clone BRAMY3018121. ).
Length = 175
Score = 32.7 bits (71), Expect = 1.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 76 THSHARTHARTYVRARTHSHTHT 8
TH H T+ RTY++ H+H HT
Sbjct: 91 THIHTCTYKRTYIQGHIHTHMHT 113
Score = 31.9 bits (69), Expect = 2.2
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 76 THSHARTHARTYVRARTHSHTHT 8
TH+H TH TY H+HT T
Sbjct: 27 THTHMHTHTLTYTHIHMHTHTQT 49
Score = 31.9 bits (69), Expect = 2.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 76 THSHARTHARTYVRARTHSHTHTRA 2
TH+H HA ++ TH +THT A
Sbjct: 119 THTHKHIHAHIHIHTHTHIYTHTDA 143
Score = 30.7 bits (66), Expect = 5.2
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -2
Query: 76 THSHARTHARTYVRARTHSHTHT 8
TH+H RT T TH HTHT
Sbjct: 13 THAHIRTCIHTCTDTHTHMHTHT 35
>M23115-1|AAA53194.1| 997|Homo sapiens HK2 protein.
Length = 997
Score = 31.9 bits (69), Expect = 2.2
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = -3
Query: 519 RVGSTTTPPISAMKQ*CVSV*RRWGSRCNYTETLQL 412
RVGST P S +KQ +SV R WGS + L L
Sbjct: 528 RVGSTKVPMTSGVKQKIMSVIREWGSGSDTLRCLAL 563
>M23114-1|AAA53193.1| 1042|Homo sapiens HK1 protein.
Length = 1042
Score = 31.9 bits (69), Expect = 2.2
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = -3
Query: 519 RVGSTTTPPISAMKQ*CVSV*RRWGSRCNYTETLQL 412
RVGST P S +KQ +SV R WGS + L L
Sbjct: 528 RVGSTKVPMTSGVKQKIMSVIREWGSGSDTLRCLAL 563
>BC035588-1|AAH35588.1| 1042|Homo sapiens ATPase, Ca++ transporting,
cardiac muscle, slow twitch 2 protein.
Length = 1042
Score = 31.9 bits (69), Expect = 2.2
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = -3
Query: 519 RVGSTTTPPISAMKQ*CVSV*RRWGSRCNYTETLQL 412
RVGST P S +KQ +SV R WGS + L L
Sbjct: 528 RVGSTKVPMTSGVKQKIMSVIREWGSGSDTLRCLAL 563
>AK127759-1|BAC87117.1| 294|Homo sapiens r (EC 1.6.5.3). protein.
Length = 294
Score = 31.9 bits (69), Expect = 2.2
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -2
Query: 100 RPGRAARVT-HSHARTHARTYVRARTHSHTH 11
RP +AR + H+H TH T V+ RTH+ TH
Sbjct: 83 RPSSSARASLHTHRHTHTHTNVQTRTHT-TH 112
Score = 30.3 bits (65), Expect = 6.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 76 THSHARTHARTYVRARTHSHTHT 8
TH+H THA T A T +H HT
Sbjct: 149 THAHLHTHAHTSTCAHTLAHIHT 171
>AK091508-1|BAC03679.1| 239|Homo sapiens protein ( Homo sapiens
cDNA FLJ34189 fis, clone FCBBF3017535. ).
Length = 239
Score = 31.1 bits (67), Expect = 3.9
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 79 VTHSHARTHARTYVRARTHSHTHT 8
V + RTHAR +TH HTHT
Sbjct: 100 VVGTQTRTHARARTHTQTHRHTHT 123
Score = 30.7 bits (66), Expect = 5.2
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -2
Query: 109 RCKRPGRAARVTHSHARTHARTYVRARTHSHTHT 8
R KR T +HAR ART+ + H+HTHT
Sbjct: 94 RLKRETVVGTQTRTHAR--ARTHTQTHRHTHTHT 125
>U53209-1|AAC50658.1| 282|Homo sapiens transformer-2 alpha protein.
Length = 282
Score = 30.7 bits (66), Expect = 5.2
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -2
Query: 91 RAARVTHSHARTHA-RTYVRARTHSHTHTR 5
R+ + S +R H+ R Y R+R+HSH+H R
Sbjct: 51 RSRSKSRSRSRRHSHRRYTRSRSHSHSHRR 80
Score = 29.9 bits (64), Expect = 9.1
Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = -2
Query: 103 KRPGRAARVTHSHARTHARTYVRARTHSH-THTRA 2
+ P R ++ + SH+R+ +++ R+R HSH +TR+
Sbjct: 37 RSPSRVSKHSESHSRSRSKSRSRSRRHSHRRYTRS 71
>BC017094-1|AAH17094.1| 282|Homo sapiens transformer-2 alpha
protein.
Length = 282
Score = 30.7 bits (66), Expect = 5.2
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -2
Query: 91 RAARVTHSHARTHA-RTYVRARTHSHTHTR 5
R+ + S +R H+ R Y R+R+HSH+H R
Sbjct: 51 RSRSKSRSRSRRHSHRRYTRSRSHSHSHRR 80
Score = 29.9 bits (64), Expect = 9.1
Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = -2
Query: 103 KRPGRAARVTHSHARTHARTYVRARTHSH-THTRA 2
+ P R ++ + SH+R+ +++ R+R HSH +TR+
Sbjct: 37 RSPSRVSKHSESHSRSRSKSRSRSRRHSHRRYTRS 71
>AK124627-1|BAC85906.1| 175|Homo sapiens protein ( Homo sapiens
cDNA FLJ42636 fis, clone BRACE3023912. ).
Length = 175
Score = 30.7 bits (66), Expect = 5.2
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 5/26 (19%)
Frame = -2
Query: 73 HSHARTHAR-----TYVRARTHSHTH 11
H+HA THA+ TY+ R H+HTH
Sbjct: 82 HAHAGTHAQMHTQCTYLHTRVHTHTH 107
>AK057435-1|BAB71485.1| 170|Homo sapiens protein ( Homo sapiens
cDNA FLJ32873 fis, clone TESTI2003998, weakly similar to
T-CELL RECEPTOR BETA CHAIN ANA 11. ).
Length = 170
Score = 30.7 bits (66), Expect = 5.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 73 HSHARTHARTYVRARTHSHTH 11
HSH H +T+ TH+HTH
Sbjct: 86 HSHTHAHTQTWTYTCTHTHTH 106
>AC023105-1|AAQ96870.1| 282|Homo sapiens unknown protein.
Length = 282
Score = 30.7 bits (66), Expect = 5.2
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -2
Query: 91 RAARVTHSHARTHA-RTYVRARTHSHTHTR 5
R+ + S +R H+ R Y R+R+HSH+H R
Sbjct: 51 RSRSKSRSRSRRHSHRRYTRSRSHSHSHRR 80
Score = 29.9 bits (64), Expect = 9.1
Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = -2
Query: 103 KRPGRAARVTHSHARTHARTYVRARTHSH-THTRA 2
+ P R ++ + SH+R+ +++ R+R HSH +TR+
Sbjct: 37 RSPSRVSKHSESHSRSRSKSRSRSRRHSHRRYTRS 71
>AB097048-1|BAC77401.1| 282|Homo sapiens putative MAPK activating
protein protein.
Length = 282
Score = 30.7 bits (66), Expect = 5.2
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -2
Query: 91 RAARVTHSHARTHA-RTYVRARTHSHTHTR 5
R+ + S +R H+ R Y R+R+HSH+H R
Sbjct: 51 RSRSKSRSRSRRHSHRRYTRSRSHSHSHRR 80
Score = 29.9 bits (64), Expect = 9.1
Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = -2
Query: 103 KRPGRAARVTHSHARTHARTYVRARTHSH-THTRA 2
+ P R ++ + SH+R+ +++ R+R HSH +TR+
Sbjct: 37 RSPSRVSKHSESHSRSRSKSRSRSRRHSHRRYTRS 71
>U66060-17|AAC13334.1| 115|Homo sapiens V_segment translation
product protein.
Length = 115
Score = 30.3 bits (65), Expect = 6.9
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = -3
Query: 279 HTYARVSGWPSTSPVE-GTSVSQRCRRTSRCRYLQYLVLSTG-GYKLSNVGYSIVHVEHD 106
H A ++ P E GT V+ RC +T RY+ + G G +L + Y + +
Sbjct: 18 HMDAGITQSPRHKVTETGTPVTLRCHQTENHRYMYWYRQDPGHGLRLIHYSYGVKDTD-K 76
Query: 105 ASVRDGRPVSR 73
V DG VSR
Sbjct: 77 GEVSDGYSVSR 87
>U03115-3|AAA17711.1| 113|Homo sapiens T-cell receptor beta chain V
region precursor protein.
Length = 113
Score = 30.3 bits (65), Expect = 6.9
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = -3
Query: 279 HTYARVSGWPSTSPVE-GTSVSQRCRRTSRCRYLQYLVLSTG-GYKLSNVGYSIVHVEHD 106
H A ++ P E GT V+ RC +T RY+ + G G +L + Y + +
Sbjct: 18 HMDAGITQSPRHKVTETGTPVTLRCHQTENHRYMYWYRQDPGHGLRLIHYSYGVKDTD-K 76
Query: 105 ASVRDGRPVSR 73
V DG VSR
Sbjct: 77 GEVSDGYSVSR 87
>AK123631-1|BAC85667.1| 207|Homo sapiens protein ( Homo sapiens
cDNA FLJ41637 fis, clone FEBRA1000030, weakly similar
to T-CELL RECEPTOR BETA CHAIN ANA 11. ).
Length = 207
Score = 30.3 bits (65), Expect = 6.9
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 10/35 (28%)
Frame = -2
Query: 76 THSHARTHART----------YVRARTHSHTHTRA 2
TH+H THA T Y+ TH+HTHT A
Sbjct: 5 THAHTHTHAHTLSCKVEIWGQYLPTHTHTHTHTHA 39
Score = 30.3 bits (65), Expect = 6.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 76 THSHARTHARTYVRARTHSHTH 11
TH+H TH + TH+HTH
Sbjct: 77 THTHTHTHTHAVLYLPTHTHTH 98
>AF009663-19|AAB63913.1| 115|Homo sapiens TCRBV12S1 protein.
Length = 115
Score = 30.3 bits (65), Expect = 6.9
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = -3
Query: 279 HTYARVSGWPSTSPVE-GTSVSQRCRRTSRCRYLQYLVLSTG-GYKLSNVGYSIVHVEHD 106
H A ++ P E GT V+ RC +T RY+ + G G +L + Y + +
Sbjct: 18 HMDAGITQSPRHKVTETGTPVTLRCHQTENHRYMYWYRQDPGHGLRLIHYSYGVKDTD-K 76
Query: 105 ASVRDGRPVSR 73
V DG VSR
Sbjct: 77 GEVSDGYSVSR 87
>AF009661-3|AAB63897.1| 115|Homo sapiens TCRBV12S1 protein.
Length = 115
Score = 30.3 bits (65), Expect = 6.9
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = -3
Query: 279 HTYARVSGWPSTSPVE-GTSVSQRCRRTSRCRYLQYLVLSTG-GYKLSNVGYSIVHVEHD 106
H A ++ P E GT V+ RC +T RY+ + G G +L + Y + +
Sbjct: 18 HMDAGITQSPRHKVTETGTPVTLRCHQTENHRYMYWYRQDPGHGLRLIHYSYGVKDTD-K 76
Query: 105 ASVRDGRPVSR 73
V DG VSR
Sbjct: 77 GEVSDGYSVSR 87
>U17047-1|AAA97536.1| 95|Homo sapiens T cell receptor beta,
variable region protein.
Length = 95
Score = 29.9 bits (64), Expect = 9.1
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -3
Query: 231 GTSVSQRCRRTSRCRYLQYLVLSTG-GYKLSNVGYSIVHVEHDASVRDGRPVSR 73
GT V+ RC +T RY+ + G G +L + Y + + V DG VSR
Sbjct: 17 GTPVTLRCHQTENHRYMYWYRQDPGHGLRLIHYSYGVKDTD-KGEVSDGYSVSR 69
>S65359-1|AAB28185.1| 91|Homo sapiens T cell antigen receptor beta
chain variable region protein.
Length = 91
Score = 29.9 bits (64), Expect = 9.1
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -3
Query: 231 GTSVSQRCRRTSRCRYLQYLVLSTG-GYKLSNVGYSIVHVEHDASVRDGRPVSR 73
GT V+ RC +T RY+ + G G +L + Y + + V DG VSR
Sbjct: 16 GTPVTLRCHQTENHRYMYWYRQDPGHGLRLIHYSYGVKDTD-KGEVSDGYSVSR 68
>M14268-1|AAA60694.1| 130|Homo sapiens T-cell receptor beta chain
precursor protein.
Length = 130
Score = 29.9 bits (64), Expect = 9.1
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -3
Query: 231 GTSVSQRCRRTSRCRYLQYLVLSTG-GYKLSNVGYSIVHVEHDASVRDGRPVSR 73
GT V+ RC +T RY+ + G G +L + Y + + V DG VSR
Sbjct: 30 GTPVTLRCHQTENHRYMYWYRQDPGHGLRLIHYSYGVKDTD-KGEVSDGYSVSR 82
>M13862-1|AAA61019.1| 103|Homo sapiens TCRB protein.
Length = 103
Score = 29.9 bits (64), Expect = 9.1
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -3
Query: 231 GTSVSQRCRRTSRCRYLQYLVLSTG-GYKLSNVGYSIVHVEHDASVRDGRPVSR 73
GT V+ RC +T RY+ + G G +L + Y + + V DG VSR
Sbjct: 1 GTPVTLRCHQTENHRYMYWYRQDPGHGLRLIHYSYGVKDTD-KGEVSDGYSVSR 53
>L33102-1|AAB59454.1| 91|Homo sapiens T-cell receptor beta-chain V
region protein.
Length = 91
Score = 29.9 bits (64), Expect = 9.1
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -3
Query: 231 GTSVSQRCRRTSRCRYLQYLVLSTG-GYKLSNVGYSIVHVEHDASVRDGRPVSR 73
GT V+ RC +T RY+ + G G +L + Y + + V DG VSR
Sbjct: 16 GTPVTLRCHQTENHRYMYWYRQDPGHGLRLIHYSYGVKDTD-KGEVSDGYSVSR 68
>L33101-1|AAB59453.1| 91|Homo sapiens T-cell receptor beta-chain V
region protein.
Length = 91
Score = 29.9 bits (64), Expect = 9.1
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -3
Query: 231 GTSVSQRCRRTSRCRYLQYLVLSTG-GYKLSNVGYSIVHVEHDASVRDGRPVSR 73
GT V+ RC +T RY+ + G G +L + Y + + V DG VSR
Sbjct: 16 GTPVTLRCHQTENHRYMYWYRQDPGHGLRLIHYSYGVKDTD-KGEVSDGYSVSR 68
>L33100-1|AAB59452.1| 91|Homo sapiens T-cell receptor beta-chain V
region protein.
Length = 91
Score = 29.9 bits (64), Expect = 9.1
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -3
Query: 231 GTSVSQRCRRTSRCRYLQYLVLSTG-GYKLSNVGYSIVHVEHDASVRDGRPVSR 73
GT V+ RC +T RY+ + G G +L + Y + + V DG VSR
Sbjct: 16 GTPVTLRCHQTENHRYMYWYRQDPGHGLRLIHYSYGVKDTD-KGEVSDGYSVSR 68
>AJ389947-1|CAB59369.1| 88|Homo sapiens T cell receptor beta chain
variable region protein.
Length = 88
Score = 29.9 bits (64), Expect = 9.1
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -3
Query: 231 GTSVSQRCRRTSRCRYLQYLVLSTG-GYKLSNVGYSIVHVEHDASVRDGRPVSR 73
GT V+ RC +T RY+ + G G +L + Y + + V DG VSR
Sbjct: 1 GTPVTLRCHQTENHRYMYWYRQDPGHGLRLIHYSYGVKDTD-KGEVSDGYSVSR 53
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,612,958
Number of Sequences: 237096
Number of extensions: 2004020
Number of successful extensions: 5168
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 4409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5049
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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