Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0242
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z79600-2|CAB01875.1|  226|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z92813-5|CAB07285.1|  425|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical protein
            C23F12.1a protein.
          Length = 2329

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -1

Query: 356  PRCNKKYLYKVGRDESVSAQRRSRRLTPTRGSAAGQVLARSRGRRSPSGV 207
            P  +K  +Y  G +  + +  +S  +  TRG+ AGQ+  R RG +    V
Sbjct: 2161 PDPSKVRVYGPGVEHGILSLFKSNFVVETRGAGAGQLTVRVRGPKGAFNV 2210


>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical protein
            C23F12.1b protein.
          Length = 2747

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -1

Query: 356  PRCNKKYLYKVGRDESVSAQRRSRRLTPTRGSAAGQVLARSRGRRSPSGV 207
            P  +K  +Y  G +  + +  +S  +  TRG+ AGQ+  R RG +    V
Sbjct: 2579 PDPSKVRVYGPGVEHGILSLFKSNFVVETRGAGAGQLTVRVRGPKGAFNV 2628


>Z79600-2|CAB01875.1|  226|Caenorhabditis elegans Hypothetical
           protein F59C6.4 protein.
          Length = 226

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 84  AARPGRLHRVQRERYYNLHSRVYIPPLTVRDIVNIYSDSCGD 209
           A +PG  H    + + N+HS+ YIP    R ++ I +   GD
Sbjct: 34  ATQPGAFHNDDGKVWLNVHSKRYIPQEGDR-VIAIVTSKTGD 74


>Z92813-5|CAB07285.1|  425|Caenorhabditis elegans Hypothetical
           protein T28A8.5 protein.
          Length = 425

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/69 (26%), Positives = 35/69 (50%)
 Frame = -1

Query: 437 VTILRPYNSYLKVGGGIYVVDVYELR*PRCNKKYLYKVGRDESVSAQRRSRRLTPTRGSA 258
           +T+ R +  + ++G G++  D Y +R  R ++K   K+ R ++ S + R R +    G  
Sbjct: 28  MTVQRVFTQFSQLGAGVHSEDYY-VR--RFHRKLAPKMARWDNFSIEARVRLMFGLDGKV 84

Query: 257 AGQVLARSR 231
           A   L + R
Sbjct: 85  ADDFLRQIR 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,264,320
Number of Sequences: 27780
Number of extensions: 308230
Number of successful extensions: 716
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)