Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0242
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.7  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   3.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.8  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   8.5  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 662 ANPPSVRTICTVVVIQITNHAD*IIKNYKM 573
           ANP   R  C     Q+TN ++ ++K  K+
Sbjct: 416 ANPDIFRVSCATEHSQLTNISEEVLKEAKI 445


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 662 ANPPSVRTICTVVVIQITNHAD*IIKNYKM 573
           ANP   R  C     Q+TN ++ ++K  K+
Sbjct: 122 ANPDIFRVSCATEHSQLTNISEEVLKEAKI 151


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -2

Query: 73  HSHARTHARTYVRARTHSHTHTRA 2
           H H   H  +++ A  H H H+ A
Sbjct: 415 HHHTMGHGHSHIHATPHHH-HSHA 437


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 458  EGGGAAVVTILRPYNSYLKV 399
            EGG    +T LRPY  Y  V
Sbjct: 1067 EGGAELRLTGLRPYTKYTLV 1086


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 458  EGGGAAVVTILRPYNSYLKV 399
            EGG    +T LRPY  Y  V
Sbjct: 1063 EGGAELRLTGLRPYTKYTLV 1082


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 332 RDIFCCIWVTGAHRRLQRKC 391
           R +   +WV GA R  +++C
Sbjct: 86  RVLHTTVWVAGAQRGNEQRC 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,510
Number of Sequences: 438
Number of extensions: 4160
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)