Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0242
(695 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g08505.2 68416.m00987 zinc finger (CCCH-type/C3HC4-type RING ... 29 2.2
At3g08505.1 68416.m00986 zinc finger (CCCH-type/C3HC4-type RING ... 29 2.2
At5g06560.1 68418.m00740 expressed protein contains Pfam profile... 29 3.9
At5g59730.1 68418.m07487 exocyst subunit EXO70 family protein le... 28 6.8
At4g28800.1 68417.m04118 bHLH family protein contains Pfam profi... 28 6.8
At3g18710.1 68416.m02376 U-box domain-containing protein similar... 28 6.8
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 27 9.0
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 27 9.0
At1g66940.2 68414.m07609 protein kinase-related 27 9.0
At1g66940.1 68414.m07608 protein kinase-related 27 9.0
>At3g08505.2 68416.m00987 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains zinc finger
C-x8-C-x5-C-x3-H type (and similar) domains,
Pfam:PF00642 and zinc finger, C3HC4 type (RING finger)
domain, Pfam:PF00097
Length = 323
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 264 VSGWPSTSPVEGTSVSQRCRRTSRCRYLQYLVL 166
+ W S++PV G V+ R CR L Y V+
Sbjct: 203 IRNWRSSAPVSGMDVNSTLRACPICRKLSYFVV 235
>At3g08505.1 68416.m00986 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains zinc finger
C-x8-C-x5-C-x3-H type (and similar) domains,
Pfam:PF00642 and zinc finger, C3HC4 type (RING finger)
domain, Pfam:PF00097
Length = 323
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 264 VSGWPSTSPVEGTSVSQRCRRTSRCRYLQYLVL 166
+ W S++PV G V+ R CR L Y V+
Sbjct: 203 IRNWRSSAPVSGMDVNSTLRACPICRKLSYFVV 235
>At5g06560.1 68418.m00740 expressed protein contains Pfam profile
PF04576: Protein of unknown function, DUF593
Length = 518
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +3
Query: 36 RTYVRACVRACECVTRAARPGRLHRVQRERYYNLHSR--VYIPPL 164
R VR C C+C A PG L R + +Y + +IP L
Sbjct: 11 RDVVRCCDCGCDCSLNGASPGSLLRSVKRKYEEFENEKLFHIPEL 55
>At5g59730.1 68418.m07487 exocyst subunit EXO70 family protein
leucine zipper-containing protein, Lycopersicon
esculentum, PIR:S21495 contains Pfam domain PF03081:
Exo70 exocyst complex subunit;
Length = 634
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 42 YVRACVRACECVTRAARPGRLHRVQRERYYNLH 140
Y + CVR + V ++ LH +Q ER +NLH
Sbjct: 182 YAKECVRVYKTVRKSIVDETLHNLQMER-FNLH 213
>At4g28800.1 68417.m04118 bHLH family protein contains Pfam profile:
PF00010 helix-loop-helix DNA-binding domain
Length = 478
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -3
Query: 528 ESARVGSTTTPPISAMKQ*CV 466
ES +VGS TTPP S+ + CV
Sbjct: 156 ESMQVGSNTTPPSSSATESCV 176
>At3g18710.1 68416.m02376 U-box domain-containing protein similar to
immediate-early fungal elicitor protein CMPG1
[Petroselinum crispum] GI:14582200; contains Pfam
profile PF04564: U-box domain
Length = 415
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = +3
Query: 135 LHSRVYIPPLTVRDIVNIYSDSCG 206
L ++ ++P LT++ ++NI+SDS G
Sbjct: 60 LKTKDFVPNLTLQRLINIWSDSIG 83
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -1
Query: 362 R*PRCNKKYLYKVGRDESVSAQRRSRRLTPTRGS-AAGQVLARSRGRRSPSGV 207
R P+ ++ + GRD+S+S R+ +P RGS G GR S S +
Sbjct: 197 RSPKAMERSVSPKGRDQSLSPDRKVIDASPKRGSDYDGSPKENGNGRNSASPI 249
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -1
Query: 362 R*PRCNKKYLYKVGRDESVSAQRRSRRLTPTRGS-AAGQVLARSRGRRSPSGV 207
R P+ ++ + GRD+S+S R+ +P RGS G GR S S +
Sbjct: 156 RSPKAMERSVSPKGRDQSLSPDRKVIDASPKRGSDYDGSPKENGNGRNSASPI 208
>At1g66940.2 68414.m07609 protein kinase-related
Length = 309
Score = 27.5 bits (58), Expect = 9.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 603 VVCYLNDNNCTDCSNGRGVCHV 668
V +N+N C +C + G CHV
Sbjct: 199 VTVVINENTCQECLSSLGRCHV 220
>At1g66940.1 68414.m07608 protein kinase-related
Length = 332
Score = 27.5 bits (58), Expect = 9.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 603 VVCYLNDNNCTDCSNGRGVCHV 668
V +N+N C +C + G CHV
Sbjct: 199 VTVVINENTCQECLSSLGRCHV 220
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,241,192
Number of Sequences: 28952
Number of extensions: 278129
Number of successful extensions: 586
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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