Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0241
         (681 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4VDP4 Cluster: Putative uncharacterized protein; n=3; ...    33   4.9  

>UniRef50_A4VDP4 Cluster: Putative uncharacterized protein; n=3;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1438

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
 Frame = +3

Query: 12   YKKLLSISFSARTPIDFHNFIMVLFTQYAQL-STYQYADFYTTKNLLGSI*ITKVINVLF 188
            Y+KLL +SF  R  + FH F  + F    QL  T ++  FY    ++ S+ I+ + +  +
Sbjct: 1258 YQKLLKVSFIKRILV-FHYFFSIFFIHDEQLPRTLRFTIFYL--RIVHSLSISTIFDQQY 1314

Query: 189  QNYQV*I*YLIHLKNTLRINSFIILYQ 269
               Q+    ++ + NTL I   IIL Q
Sbjct: 1315 DEVQM---IIVSIINTLIIVISIILIQ 1338


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 521,995,467
Number of Sequences: 1657284
Number of extensions: 8941067
Number of successful extensions: 14160
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 13810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14148
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52892566912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)