Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0241
         (681 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41558-3|AAK39244.1|  556|Caenorhabditis elegans Innexin protein...    27   9.4  
DQ338465-1|ABC67522.1|  690|Caenorhabditis elegans KEL-8 protein.      27   9.4  
AF067946-5|AAC17684.4|  690|Caenorhabditis elegans Hypothetical ...    27   9.4  

>U41558-3|AAK39244.1|  556|Caenorhabditis elegans Innexin protein 7
           protein.
          Length = 556

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 11  LQKIVKHKFFRAHTDRLS*FYYGFIYTICPTKYL 112
           L+KIV HK  R    + S +Y  FIY +    +L
Sbjct: 195 LKKIVPHKILRFLNIKYSAYYVTFIYFVAKVAFL 228


>DQ338465-1|ABC67522.1|  690|Caenorhabditis elegans KEL-8 protein.
          Length = 690

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 69  FIMVLFTQYAQLSTYQYADFYTTKNLLGSI 158
           F+  + T +  +S Y ++D Y   NL+ SI
Sbjct: 203 FLATMITSHNCMSLYHFSDIYNCTNLISSI 232


>AF067946-5|AAC17684.4|  690|Caenorhabditis elegans Hypothetical
           protein W02G9.2 protein.
          Length = 690

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 69  FIMVLFTQYAQLSTYQYADFYTTKNLLGSI 158
           F+  + T +  +S Y ++D Y   NL+ SI
Sbjct: 203 FLATMITSHNCMSLYHFSDIYNCTNLISSI 232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,696,738
Number of Sequences: 27780
Number of extensions: 228141
Number of successful extensions: 376
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)