Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0240
(673 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy... 45 9e-06
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 28 1.4
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ... 26 4.3
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 26 4.3
SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 5.7
SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|ch... 26 5.7
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 25 7.5
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.5
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa... 25 7.5
SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom... 25 9.9
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||... 25 9.9
>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 541
Score = 45.2 bits (102), Expect = 9e-06
Identities = 21/60 (35%), Positives = 32/60 (53%)
Frame = +3
Query: 306 NYRIPKNAMVIPLQWAIHMDPNVWEEPEKFKPRRFLAQDGSLLKPQEFIPFQTGKRMCPG 485
+Y +PK+AMVIP + D V+ EPE F P R+ + P+ ++ F G +C G
Sbjct: 402 DYTVPKDAMVIPTLYGALHDSKVYPEPETFNPDRWAPNGLAEQSPKNWMVFGNGPHVCLG 461
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +1
Query: 34 DEQLHFLLADMFGAGLDTTSVTLAWFLLYMALFPEEQEEIRKEIL 168
DE++ A D TS + W +A P+ +++R+E L
Sbjct: 306 DEEISLTFLSFLFASQDATSSAMTWLFQLLADHPDVLQKVREEQL 350
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = -3
Query: 284 TTMGYSHWNNDRIL*VSQIAAIRRGNLELSTSSSYGYTDKISLRISSCSSGNK 126
T + + WN D L Q+ LEL S YG ++++L+I S NK
Sbjct: 24 TQLKVAVWNGDVTLRNLQLKRSAFRKLELPISVQYGLVEELTLKIPWSSLKNK 76
>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 318
Score = 26.2 bits (55), Expect = 4.3
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -3
Query: 116 SKNQAKVTDVVSSPAPNISASRKCNCSSLIY 24
SK A + D+++ APN+SA K NC LI+
Sbjct: 157 SKLNAFLHDLIN--APNVSAEMKENCVRLIF 185
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 26.2 bits (55), Expect = 4.3
Identities = 12/39 (30%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Frame = -3
Query: 239 VSQIAAIRRGNLE--LSTSSSYGYTDKISLRISSCSSGN 129
+ +++ ++ +LE LS S+S GY +ISL++S ++ +
Sbjct: 87 IRKVSRVKSNDLEQLLSVSTSNGYEYRISLQVSETTAAH 125
>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 283
Score = 25.8 bits (54), Expect = 5.7
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Frame = -3
Query: 215 RGNLELSTSSSYGYTD---KISLRISSCSSGNKAMYSKNQAKVTDVVSSPAPNISASRKC 45
RG+ + T+SSYG T +I S S+ + + N VT VSS + + + R
Sbjct: 108 RGSACVETNSSYGLTRGLCQIGSSNYSTSANSSNFDNANVINVTTSVSSGSTSTHSKRSS 167
Query: 44 NCSSLIYSAVGSPL 3
S + V P+
Sbjct: 168 GISLSYTNIVDQPI 181
>SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 440
Score = 25.8 bits (54), Expect = 5.7
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 236 KLRGFDHCSSGNTPWLY 286
+L+ D+ S GN PWLY
Sbjct: 95 ELKQLDNASWGNAPWLY 111
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 25.4 bits (53), Expect = 7.5
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 379 KNQ-KNSNRVDFWLRMVVYLSLKNSFRFKLVSGCVR 483
KN+ K S ++ W +V+Y S N +V GC R
Sbjct: 532 KNKDKISKKIHKWDHVVLYGSTANGLTIPIVHGCKR 567
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.5
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = -3
Query: 197 STSSSYGYTDKISLRISSCSSGNKAMYSKNQAKVTDVVSSPAPNISASRKCNCSSLIYSA 18
STSSSY + + SS SS + + + + + + S+ + + S S + SS +A
Sbjct: 204 STSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTA 263
Query: 17 VGS 9
S
Sbjct: 264 SSS 266
>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 7.5
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = -3
Query: 224 AIRRGNLELSTSSSYGYTDKISLRISSCSSGNKAMYSKNQAKVTDVVSSPAPN 66
A N + + SY D I ++S +G+ YS+ DV S +PN
Sbjct: 541 AFPNDNQDADDACSYNTGDSIP-QVSKSINGHFETYSRTSMDTDDVASFESPN 592
>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 110 NQAKVTDVVSSPAPNISASRKCNCSSLIYSAV 15
NQA + + V AP+I+ N ++L+ S+V
Sbjct: 295 NQASIFEAVHGTAPDIAGKGLANPTALLLSSV 326
>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
1|||Manual
Length = 459
Score = 25.0 bits (52), Expect = 9.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3
Query: 383 FFPNIRIHVNSPLQWD 336
F P+ +HV SP+ WD
Sbjct: 83 FLPSFVLHVISPINWD 98
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,133,831
Number of Sequences: 5004
Number of extensions: 70023
Number of successful extensions: 203
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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