Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0240
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    45   8e-07
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    40   2e-05
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    34   0.001
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.1  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    21   8.1  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 44.8 bits (101), Expect = 8e-07
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = +3

Query: 303 GNYRIPKNAMVIPLQWAIHMDPNVWEEPEKFKPRRFLAQDGSLLKPQEFIPFQTGKRMCP 482
           G+Y IP    V+   + +H  P+++  P+ F P  FL +  +      F+PF  G R C 
Sbjct: 430 GDYTIPAGCTVVIGTFKLHRQPHIYPNPDVFDPDNFLPEKTANRHYYAFVPFSAGPRSCV 489

Query: 483 G 485
           G
Sbjct: 490 G 490


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 40.3 bits (90), Expect = 2e-05
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = +3

Query: 315 IPKNAMVIPLQWAIHMDPNVWEEPEKFKPRRFLAQDGSLLKPQEFIPFQTGKRMCPG 485
           IPK   +    +AIH D  ++  P+ F P RF     +   P  ++PF  G R C G
Sbjct: 390 IPKEMKIWIPAFAIHRDSAIYPNPDSFDPERFDQDAMASRHPMHYLPFGDGPRNCIG 446


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 33.9 bits (74), Expect = 0.001
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +3

Query: 288 EDAYLGNYRIPKNAMVIPLQWAIHMDPNVWEEPEKFKPRRFLAQDGSLLKPQEFIPFQTG 467
           E   L  YR+    +V+   W   ++   +++ +K+ P R+     +   P    PF  G
Sbjct: 404 EPIELSGYRLTAGTVVLLHTWIAGLNEENFKDAKKYLPERWTTPT-TPHSPLLVAPFGAG 462

Query: 468 KRMCPG 485
           +R+CPG
Sbjct: 463 RRICPG 468


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -3

Query: 482 RTHPLTSLKRNEFLRLK*TTILSQ--KSTRFEFFWFFPNIRI 363
           RTH +  L R  FL+   T ++ +  K TR  +    PN+ +
Sbjct: 326 RTHRMPQLIRKIFLKYLPTILMMRRPKKTRLRWMMEIPNVTL 367


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = -1

Query: 154 VFLPVLLETKPCIAKTKLKSPM*YPVRHRTYPLVENVTVHL 32
           +F  +L+    C+    L      P  H+  P V+ V +H+
Sbjct: 312 IFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIHI 352


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = -1

Query: 154 VFLPVLLETKPCIAKTKLKSPM*YPVRHRTYPLVENVTVHL 32
           +F  +L+    C+    L      P  H+  P V+ V +H+
Sbjct: 312 IFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIHI 352


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 329 GIFWDSVVTQVSVLYTTMGYSHWNN 255
           G+F  +++  V V Y T  Y  W++
Sbjct: 505 GVFTFNIIKFVPVKYLTYEYPWWSH 529


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 329 GIFWDSVVTQVSVLYTTMGYSHWNN 255
           G+F  +++  V V Y T  Y  W++
Sbjct: 558 GVFTFNIIKFVPVKYLTYEYPWWSH 582


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 543 VFDSHQKYRQQKRCVGTVRCYVGHSS 620
           V D H + +++ RCV   R Y   +S
Sbjct: 25  VADKHAERQEEYRCVICERVYCSRNS 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,082
Number of Sequences: 438
Number of extensions: 5010
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)