Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0239
         (687 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    56   3e-10
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    23   3.1  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    23   3.1  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   7.2  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    21   9.5  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 56.0 bits (129), Expect = 3e-10
 Identities = 26/83 (31%), Positives = 46/83 (55%)
 Frame = +3

Query: 261 KLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQF 440
           K   L  + +     + +IF  T+R  D+L   +  ++   +++HGD  Q ERE  +  F
Sbjct: 396 KRSKLVSILEKAPNERTLIFVETKRNADFLATFLSEQNIQSTSIHGDRYQSEREKALLDF 455

Query: 441 RTGSSRVLITTDLLARGIDVQQV 509
           +TG  +VL+ T + ARG+D++ V
Sbjct: 456 KTGHRKVLVATGVAARGLDIKDV 478



 Score = 43.6 bits (98), Expect = 2e-06
 Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
 Frame = +1

Query: 7   NTIKLFVLDEADEMLSRGFKDQIHDVFKMLS----ADVQVILLSATMPDDVLEVSRCFMR 174
           N++K FVLDEAD ML  GF   + ++    S     + Q ++ SAT P++V +++  F+ 
Sbjct: 308 NSLKYFVLDEADRMLDMGFLGDVEEMLSHQSMPATGERQTLMFSATFPEEVQQLAGKFLL 367

Query: 175 DPVRILV 195
           + + I V
Sbjct: 368 NYIFIAV 374



 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 515 VINYDLPSNRENY 553
           VINYDLP + + Y
Sbjct: 481 VINYDLPKSIDEY 493


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +1

Query: 367 CVTLLYLLCME 399
           C+TLLY++C E
Sbjct: 322 CMTLLYIICNE 332


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +1

Query: 367 CVTLLYLLCME 399
           C+TLLY++C E
Sbjct: 322 CMTLLYIICNE 332


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 344 IHLATGVAENYSLC 303
           +HLA GV   YS+C
Sbjct: 123 VHLAYGVVIIYSIC 136


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 346 GSLNLCICVTLLYLLCMETWINVSVK 423
           GS+N+ + +T      M T+ NVS++
Sbjct: 53  GSMNMTVAITDKIANFMLTFFNVSLR 78


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,367
Number of Sequences: 336
Number of extensions: 3496
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)