Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0239
(687 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 151 9e-38
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 137 2e-33
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 75 1e-14
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 62 6e-11
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 60 3e-10
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 58 9e-10
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 58 2e-09
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 58 2e-09
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 55 1e-08
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 52 1e-07
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 49 7e-07
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 49 7e-07
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 48 1e-06
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 48 1e-06
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 48 1e-06
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 48 2e-06
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 47 2e-06
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 43 4e-05
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 42 8e-05
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 40 3e-04
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 40 3e-04
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 40 4e-04
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 39 6e-04
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 39 8e-04
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 32 0.089
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 30 0.36
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 27 1.9
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 27 2.5
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 27 3.4
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy... 26 4.4
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 26 4.4
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar... 26 4.4
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 25 7.8
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 151 bits (366), Expect = 9e-38
Identities = 66/85 (77%), Positives = 78/85 (91%)
Frame = +3
Query: 255 EWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMR 434
EWKL+TLCDLY+T+++ QAVIFCNTRRKVDWLTE + RDFTVS+MHGDMDQ +R+ +M
Sbjct: 243 EWKLDTLCDLYETVTVTQAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMH 302
Query: 435 QFRTGSSRVLITTDLLARGIDVQQV 509
+FRTGSSR+LITTDLLARGIDVQQV
Sbjct: 303 EFRTGSSRILITTDLLARGIDVQQV 327
Score = 135 bits (327), Expect = 5e-33
Identities = 63/96 (65%), Positives = 80/96 (83%)
Frame = +1
Query: 7 NTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVR 186
+ +++FVLDEADEMLSRGFKDQI+D+F++L QV+LLSATMP DVLEV+ FMRDP+R
Sbjct: 160 DAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQVVLLSATMPQDVLEVTTKFMRDPIR 219
Query: 187 ILVQKEELTLEGIKQFYIAIELENGSWKLCVTCMIH 294
ILV+K+ELTLEGIKQFY+A+E E WKL C ++
Sbjct: 220 ILVKKDELTLEGIKQFYVAVEKE--EWKLDTLCDLY 253
Score = 48.4 bits (110), Expect = 1e-06
Identities = 27/59 (45%), Positives = 30/59 (50%)
Frame = +2
Query: 509 SCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTGS*QESTGRDIEDFYHTSIVEMP 685
S VINYDLP+NRENY NFVT R+IE FY+T I EMP
Sbjct: 328 SLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTND-DVRMMREIEQFYNTHIEEMP 385
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 137 bits (331), Expect = 2e-33
Identities = 61/85 (71%), Positives = 73/85 (85%)
Frame = +3
Query: 255 EWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMR 434
EWK +TLCDLYDTL+I QAVIFCN+RRKVDWLTE M +FTV++MHG+M Q+ER+ IM+
Sbjct: 245 EWKFDTLCDLYDTLTITQAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQ 304
Query: 435 QFRTGSSRVLITTDLLARGIDVQQV 509
FR G+SRVLI TD+ ARGIDVQQV
Sbjct: 305 DFRQGNSRVLICTDIWARGIDVQQV 329
Score = 109 bits (262), Expect = 4e-25
Identities = 47/94 (50%), Positives = 74/94 (78%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 192
+K+ +LDEADE+L++GFK+QI+D+++ L QV+++SAT+P DVLE++ F +PVRIL
Sbjct: 164 VKMLILDEADELLNQGFKEQIYDIYRYLPPGTQVVVVSATLPQDVLEMTNKFTTNPVRIL 223
Query: 193 VQKEELTLEGIKQFYIAIELENGSWKLCVTCMIH 294
V+++ELTLEG+KQ++IA+E E WK C ++
Sbjct: 224 VKRDELTLEGLKQYFIAVEKE--EWKFDTLCDLY 255
Score = 46.8 bits (106), Expect = 3e-06
Identities = 27/59 (45%), Positives = 29/59 (49%)
Frame = +2
Query: 509 SCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTGS*QESTGRDIEDFYHTSIVEMP 685
S VINYDLP+NRENY NFVT RDIE +Y T I EMP
Sbjct: 330 SLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNE-DVRILRDIEQYYSTVIDEMP 387
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 74.5 bits (175), Expect = 1e-14
Identities = 34/85 (40%), Positives = 54/85 (63%)
Frame = +3
Query: 255 EWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMR 434
E K L +LY L+I Q++IFC + + + M TV+ + G+++ +R+ IM
Sbjct: 337 EHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMD 396
Query: 435 QFRTGSSRVLITTDLLARGIDVQQV 509
FR G+S+VL+TT+++ARGIDV QV
Sbjct: 397 SFRVGTSKVLVTTNVIARGIDVSQV 421
Score = 62.1 bits (144), Expect = 7e-11
Identities = 35/93 (37%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Frame = +1
Query: 4 ANTIKLFVLDEADEMLSR-GFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDP 180
A IK+FVLDEAD ML + G DQ + +L + Q++L SAT + V + + F +
Sbjct: 252 ARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNA 311
Query: 181 VRILVQKEELTLEGIKQFYIAIELENGSWKLCV 279
I ++ EEL++EGIKQ Y+ + E + + V
Sbjct: 312 NEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLV 344
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 62.5 bits (145), Expect = 6e-11
Identities = 31/83 (37%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Frame = +1
Query: 7 NTIKLFVLDEADEML-SRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPV 183
N++K FVLDE D++L S + I +VF+ QV++ SAT+ +++ + + FM++P+
Sbjct: 196 NSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQVMMFSATLSNEIRPICKKFMQNPL 255
Query: 184 RILVQKE-ELTLEGIKQFYIAIE 249
I V E +LTL G++Q Y+ +E
Sbjct: 256 EIYVDDETKLTLHGLQQHYVKLE 278
Score = 48.8 bits (111), Expect = 7e-07
Identities = 24/77 (31%), Positives = 40/77 (51%)
Frame = +3
Query: 279 DLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSR 458
DL D+L Q VIF + + + L + +F +HG + Q ER + F+ R
Sbjct: 288 DLLDSLEFNQVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKR 347
Query: 459 VLITTDLLARGIDVQQV 509
+ + TD+ RGID+++V
Sbjct: 348 ICVATDVFGRGIDIERV 364
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 60.1 bits (139), Expect = 3e-10
Identities = 30/83 (36%), Positives = 45/83 (54%)
Frame = +3
Query: 261 KLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQF 440
K+ L L+ L I Q++IFCN+ +V+ L + + ++ H M Q R + F
Sbjct: 268 KVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNF 327
Query: 441 RTGSSRVLITTDLLARGIDVQQV 509
R G R L+ +DLL RGID+Q V
Sbjct: 328 RNGVCRNLVCSDLLTRGIDIQAV 350
Score = 44.4 bits (100), Expect = 2e-05
Identities = 26/76 (34%), Positives = 39/76 (51%)
Frame = +1
Query: 22 FVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQK 201
FV+DEAD++LS F I + + Q+ L SAT P V + P I +
Sbjct: 190 FVMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYSATFPLIVKNFMDKHLNKPYEINLM- 248
Query: 202 EELTLEGIKQFYIAIE 249
+ELTL G+ Q+Y ++
Sbjct: 249 DELTLRGVTQYYAFVD 264
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 58.4 bits (135), Expect = 9e-10
Identities = 25/68 (36%), Positives = 43/68 (63%)
Frame = +3
Query: 306 QAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 485
+ +IF T+R D +T + + A+HGD Q ER+ ++ +FRTG S +++ TD+ +
Sbjct: 371 KVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVAS 430
Query: 486 RGIDVQQV 509
RGIDV+ +
Sbjct: 431 RGIDVKGI 438
Score = 52.4 bits (120), Expect = 6e-08
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 192
+ VLDEAD ML GF+ QI + + D Q ++ SAT P +V ++R ++ D +++
Sbjct: 270 VTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRLARDYLNDYIQVT 329
Query: 193 VQKEELTL-EGIKQFYIAIE 249
V +L IKQ ++
Sbjct: 330 VGSLDLAASHNIKQIVEVVD 349
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 57.6 bits (133), Expect = 2e-09
Identities = 26/78 (33%), Positives = 47/78 (60%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 192
I++ V+DEAD ML GF D+++++ + Q +L SATM D V ++ R + PVR+
Sbjct: 406 IEIMVMDEADRMLEDGFADELNEIIQACPKSRQTMLFSATMTDKVDDLIRLSLNRPVRVF 465
Query: 193 VQKEELTLEGIKQFYIAI 246
V ++ T + + Q ++ +
Sbjct: 466 VDNKKTTAKLLTQEFVRV 483
Score = 44.8 bits (101), Expect = 1e-05
Identities = 26/119 (21%), Positives = 49/119 (41%)
Frame = +3
Query: 306 QAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 485
+ +IF ++ + L + +HG + Q +R + FR G L+ TD+ +
Sbjct: 506 RTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDVAS 565
Query: 486 RGIDVQQVPASSTMICHPTVKIIFTGXXXXXXXXXXXXXSTL*LEADRRALEGILRTST 662
RGID++ + T ++ TL E DR+ L+G+ + S+
Sbjct: 566 RGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGEGDRKVLKGVFKNSS 624
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 57.6 bits (133), Expect = 2e-09
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Frame = +3
Query: 261 KLETLCDLYDTLSI-AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQ 437
K L D+ TL +IF T+R D LT+ + +F +++HGD QRERE +
Sbjct: 416 KRSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALEL 475
Query: 438 FRTGSSRVLITTDLLARGIDVQQV 509
FR+G + +++ T + +RG+D+ V
Sbjct: 476 FRSGRTSIMVATAVASRGLDIPNV 499
Score = 52.0 bits (119), Expect = 8e-08
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFK---MLSADV-QVILLSATMPDDVLEVSRCFMRDP 180
IK VLDEAD ML GF+ QI + + M S + Q ++ SAT P D+ ++R F++D
Sbjct: 330 IKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLKDY 389
Query: 181 VRILVQKEELTLEGIKQFYIAIE 249
V + V + T E I Q + +E
Sbjct: 390 VFLSVGRVGSTSENITQKVVHVE 412
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 54.8 bits (126), Expect = 1e-08
Identities = 25/82 (30%), Positives = 47/82 (57%)
Frame = +3
Query: 264 LETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFR 443
LE L +LY+ + ++F + + D L + R +T +++HG DQ +R+ + ++
Sbjct: 656 LELLGELYNNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYK 715
Query: 444 TGSSRVLITTDLLARGIDVQQV 509
G VLI T ++ARG+DV+ +
Sbjct: 716 AGVFDVLIATSVVARGLDVKSL 737
Score = 46.0 bits (104), Expect = 5e-06
Identities = 23/69 (33%), Positives = 36/69 (52%)
Frame = +1
Query: 25 VLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKE 204
VLDEAD M GF+ Q+ + + D Q +L SAT P + ++R ++ PV I V
Sbjct: 573 VLDEADRMFDLGFEPQVMRIINNIRPDRQTVLFSATFPRAMEALARKVLKKPVEITVGGR 632
Query: 205 ELTLEGIKQ 231
+ ++Q
Sbjct: 633 SVVASEVEQ 641
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 51.6 bits (118), Expect = 1e-07
Identities = 22/67 (32%), Positives = 41/67 (61%)
Frame = +3
Query: 309 AVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLAR 488
A+IF N R + + + L + V+ +H +M QRER + +FR ++++L+ TD+ +R
Sbjct: 261 AIIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSLGRFRAEAAKILVATDVASR 320
Query: 489 GIDVQQV 509
G+D+ V
Sbjct: 321 GLDIPSV 327
Score = 41.1 bits (92), Expect = 1e-04
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKML--SADVQVILLSATMPDDVLEV 156
IK V+DEAD +LS F D + D F +L S D Q +L +AT+ D + ++
Sbjct: 154 IKFLVMDEADRLLSPTFADDLDDCFSVLPASEDRQTLLFTATVTDAIRQL 203
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 48.8 bits (111), Expect = 7e-07
Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 4/83 (4%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKML-SADVQVILLSATMPDDVLEVSRCFMR-DPVR 186
++ V+DEAD +L GF+D++ + K+L S + Q +L SAT V +++R ++ P+
Sbjct: 237 LRSLVIDEADRILEIGFEDEMRQIMKILPSENRQTLLFSATQTTKVEDLARISLKPGPLY 296
Query: 187 ILVQ--KEELTLEGIKQFYIAIE 249
+ V K T+EG++Q Y+ ++
Sbjct: 297 VNVDSGKPTSTVEGLEQGYVVVD 319
Score = 38.7 bits (86), Expect = 8e-04
Identities = 17/68 (25%), Positives = 35/68 (51%)
Frame = +3
Query: 306 QAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 485
+ ++F ++ V ++ E ++ D V +HG Q+ R +F +L+ T++ A
Sbjct: 338 KVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEKGILLCTNVAA 397
Query: 486 RGIDVQQV 509
RG+D+ V
Sbjct: 398 RGLDIPAV 405
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 48.8 bits (111), Expect = 7e-07
Identities = 20/63 (31%), Positives = 40/63 (63%)
Frame = +3
Query: 312 VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 491
++F T+ V++++E + ++VS ++G +DQ R + FR G + +L+ TD+ +RG
Sbjct: 350 LVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVASRG 409
Query: 492 IDV 500
ID+
Sbjct: 410 IDI 412
Score = 48.4 bits (110), Expect = 1e-06
Identities = 23/92 (25%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Frame = +1
Query: 7 NTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVR 186
++I+ V DEAD + GF Q+ ++ L Q +L SAT+P +++ ++ ++DPV
Sbjct: 212 SSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLFSATLPRTLVDFAKAGLQDPVL 271
Query: 187 ILVQKEELTLEGIKQFYIAIE-LENGSWKLCV 279
+ + E ++ + +++ E + LC+
Sbjct: 272 VRLDVESKVSADLQSAFFSVKTAEREAALLCI 303
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 48.4 bits (110), Expect = 1e-06
Identities = 23/76 (30%), Positives = 42/76 (55%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 192
+K ++DEAD +L F I + K++ + + +L SATM V ++ R + PVR+
Sbjct: 190 LKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATMTSKVEKLQRASLHQPVRVA 249
Query: 193 VQKEELTLEGIKQFYI 240
V + T++ + Q Y+
Sbjct: 250 VSSKFSTVDTLIQRYL 265
Score = 42.3 bits (95), Expect = 6e-05
Identities = 21/76 (27%), Positives = 37/76 (48%)
Frame = +3
Query: 282 LYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRV 461
L + L+ +IF T L + F+ +HG + Q R + +F++G+
Sbjct: 279 LVNELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARST 338
Query: 462 LITTDLLARGIDVQQV 509
L+ TD+ ARG+D+ V
Sbjct: 339 LVATDVAARGLDIPLV 354
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 48.4 bits (110), Expect = 1e-06
Identities = 26/68 (38%), Positives = 36/68 (52%)
Frame = +3
Query: 306 QAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 485
+ VIF + L + + V +HG++ Q +RE + +FR G VLI TDLLA
Sbjct: 290 RVVIFVQDIERAKALYTELLFDEIHVGVIHGELPQAKREEALAKFRKGEIWVLIATDLLA 349
Query: 486 RGIDVQQV 509
RGID V
Sbjct: 350 RGIDFHGV 357
Score = 48.0 bits (109), Expect = 1e-06
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQI-HDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRI 189
++ FV+DEAD + GF +Q H + S+++ L SAT+P V E+++ DP+RI
Sbjct: 190 VEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSATIPSRVEELAKVVTVDPIRI 249
Query: 190 LVQKEELTLEGIKQ 231
+V ++ + I Q
Sbjct: 250 IVGLKDAATDSIDQ 263
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 48.4 bits (110), Expect = 1e-06
Identities = 19/66 (28%), Positives = 37/66 (56%)
Frame = +3
Query: 312 VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 491
+IF N +R ++ + + ++ + +HG Q +RE + Q R ++ +L+ TD+ RG
Sbjct: 520 IIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTADILVATDIAGRG 579
Query: 492 IDVQQV 509
ID+ V
Sbjct: 580 IDIPNV 585
Score = 35.1 bits (77), Expect = 0.010
Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 19/101 (18%)
Frame = +1
Query: 25 VLDEADEMLSRGFKDQIHDVFKML-------------------SADVQVILLSATMPDDV 147
V+DEAD ML GF+D ++ + L S+ Q I+ SAT+P V
Sbjct: 404 VMDEADRMLDMGFEDDVNKILSSLPSSNASEKDGSILATANSSSSRRQTIMFSATLPPRV 463
Query: 148 LEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELENGSWK 270
+++ ++ +PV + + ++ ++Q I ++ W+
Sbjct: 464 ANLAKSYLIEPVMLTIGNIGQAVDRVEQRVEMISDDSKKWR 504
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 47.6 bits (108), Expect = 2e-06
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Frame = +1
Query: 25 VLDEADEMLSRGFKDQIHDVFKML-----SADVQVILLSATMPDDVLEVSRCFMRDPVRI 189
VLDEAD ML GF+ I ++ + Q + SAT P+ V ++ F++DPV+I
Sbjct: 314 VLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQTVFFSATWPESVRALAATFLKDPVKI 373
Query: 190 LVQKEEL 210
+ +EL
Sbjct: 374 TIGSDEL 380
Score = 45.2 bits (102), Expect = 9e-06
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +3
Query: 369 RDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQV 509
R + V +HGDM Q R + F++G VL+ TD+ ARG+D+ +V
Sbjct: 439 RKYNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKV 485
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 47.2 bits (107), Expect = 2e-06
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 192
+++ +LDEAD +L GF+ + + L Q +L SAT V +++R +++P I
Sbjct: 186 LQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFSATQTKSVKDLARLSLQNPDFIS 245
Query: 193 VQKEEL--TLEGIKQFYIAIEL 252
V + + T + QFY+ + L
Sbjct: 246 VHENDTSSTPSNLNQFYLTVPL 267
Score = 33.9 bits (74), Expect = 0.022
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Frame = +3
Query: 261 KLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMH--GDMDQREREVIMR 434
KL+ L T + ++F ++ ++V ++ E+ +S +H G Q R +
Sbjct: 270 KLDILFGFIRTHLKFKTIVFLSSCKQVRFVYETFRRMRPGISLLHLHGKQKQTTRTEVTA 329
Query: 435 QFRTGSSRVLITTDLLARGIDVQQV 509
+F + VL TD++ARG+D V
Sbjct: 330 KFTSSRHVVLFCTDIVARGLDFPAV 354
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 43.2 bits (97), Expect = 4e-05
Identities = 20/65 (30%), Positives = 37/65 (56%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 192
+K V+DEAD MLS G+ + + + + L Q L+SAT+ ++ + + R+P +
Sbjct: 165 LKFLVIDEADLMLSFGYNEDMKTLSRSLPRGTQSFLMSATLSKNIASLQKLVCRNPFILA 224
Query: 193 VQKEE 207
V+ +E
Sbjct: 225 VKDKE 229
Score = 27.5 bits (58), Expect = 1.9
Identities = 8/15 (53%), Positives = 14/15 (93%)
Frame = +2
Query: 509 SCVINYDLPSNRENY 553
+CV+N+D+PSN ++Y
Sbjct: 396 ACVLNFDMPSNTKSY 410
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 41.9 bits (94), Expect = 8e-05
Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Frame = +3
Query: 258 WKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESM--HLRDFTVSAMHGDMDQREREVIM 431
+K++ + L T+ +A++F ++ V++ + F + A+HG Q R
Sbjct: 242 YKVQCMIHLLCTIEYEKAIVFFSSCASVEYFNSLFLTYKLPFEIVALHGQQVQSNRSRNF 301
Query: 432 RQFRTGSSR-VLITTDLLARGIDVQQV 509
+F+ + + VL TTD+ +RG+D+ V
Sbjct: 302 EKFKKSNKKTVLFTTDIASRGLDIPNV 328
Score = 38.3 bits (85), Expect = 0.001
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSR-CFMRDPVRI 189
+++ +LDEAD ++ GF+ + + L + L SATM D V + +R+ VR+
Sbjct: 155 LEILILDEADTLIDMGFQRTLQSIISQLPKQRRTGLFSATMNDTVSSFLKIAGLRNSVRV 214
Query: 190 LVQKEELTLEGIKQFYIAIELENGSWKLCVTCMIHCL 300
V ++ +AI+ V CMIH L
Sbjct: 215 SVTVTSKKIDTRTPSSLAIQSLVIPPIYKVQCMIHLL 251
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 39.9 bits (89), Expect = 3e-04
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Frame = +3
Query: 306 QAVIFCNTRRKVDWLTESMHLRDF----TVSAMHGDMDQREREVIMRQFR--TGSSRVLI 467
+A+IFC T++ V+++ +H D V+ GD+ ER++ FR G +R++I
Sbjct: 1417 RAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMI 1476
Query: 468 TTDLLARGIDVQQV 509
T GI+ V
Sbjct: 1477 ATKAFGLGINYMGV 1490
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 39.9 bits (89), Expect = 3e-04
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Frame = +3
Query: 306 QAVIFCNTRRKVDWLTESMHLRDF----TVSAMHGDMDQREREVIMRQFR--TGSSRVLI 467
+A+IFC T++ V+++ +H D V+ GD+ ER++ FR G +R++I
Sbjct: 1417 RAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMI 1476
Query: 468 TTDLLARGIDVQQV 509
T GI+ V
Sbjct: 1477 ATKAFGLGINYMGV 1490
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 39.5 bits (88), Expect = 4e-04
Identities = 18/68 (26%), Positives = 35/68 (51%)
Frame = +3
Query: 306 QAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 485
+ ++F N + +T ++ +H +DQ++R + +F+ VL+ TD+ A
Sbjct: 391 KTMVFANGIEDIKRITPFLNELKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAA 450
Query: 486 RGIDVQQV 509
RGID+ V
Sbjct: 451 RGIDIPSV 458
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADV----QVILLSATMPD 141
IK VLDEAD +L + +++ + ++L + Q + SAT +
Sbjct: 269 IKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFIFSATFDE 315
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 39.1 bits (87), Expect = 6e-04
Identities = 19/56 (33%), Positives = 35/56 (62%)
Frame = +3
Query: 333 RKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDV 500
R ++ + ES++ + F+ + + ER+ I+ +F TG +L+ +DL+ARGIDV
Sbjct: 449 RLLELIHESLN-QSFSCGLFTSSLSRDERKKIISRFATGDLNLLVCSDLMARGIDV 503
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLS 99
++ V+DEAD +L + F+D + V +S
Sbjct: 286 LRYMVIDEADRLLDQSFQDWVDTVMMEIS 314
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/63 (22%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +1
Query: 34 EADEMLSRGFKDQIHDVFKM-LSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEEL 210
+ D+ +S F I + L + +Q ++ SAT+ D +++ + +P +LVQ +++
Sbjct: 327 DLDQNISPTFLPDIDTLLPYRLPSPLQKLVFSATLTRDPSKIASLKLHNPRLVLVQNKDM 386
Query: 211 TLE 219
++
Sbjct: 387 EVD 389
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 38.7 bits (86), Expect = 8e-04
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Frame = +1
Query: 22 FVLDEADEMLSRGFKDQIHDVFK-MLSADVQVILLSATMPDDVLEVSRCFMRDPVRI--- 189
F+LDEAD ++ GF + I ++ + + + + + SATMP V V R + ++
Sbjct: 192 FILDEADRLMDMGFAESILNIHEAVTTTKTRKLCFSATMPPKVSNVFRGILGTDFKLINC 251
Query: 190 LVQKEELTLEGIKQFYIAIELE 255
L E T E + QF I +L+
Sbjct: 252 LDPNEPPTHERVPQFVIETKLD 273
Score = 33.1 bits (72), Expect = 0.039
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = +3
Query: 264 LETLCDLYDTLSIAQAVIFCNTRRKVDWLTESM--HLRDFTVSAMHGDMDQREREVIMRQ 437
L L L + ++ ++F T VD++ + HL+ +H + +R I
Sbjct: 280 LSLLQQLTSSNPSSRIIVFLPTISMVDFVGGVLENHLK-IPCFILHSGLTTAQRRSITES 338
Query: 438 FRTGSSRVLITTDLLARGIDVQQV 509
FR S +L TD++ARG+D +
Sbjct: 339 FRKCQSGILFATDVVARGMDFPNI 362
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 31.9 bits (69), Expect = 0.089
Identities = 14/64 (21%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +3
Query: 312 VIFCNTRRKVDWLTESMHLRDFTVSAMH--GDMDQREREVIMRQFRTGSSRVLITTDLLA 485
+I+C +R + + + D+ + A H +++ ER+ I ++++GS ++++ T
Sbjct: 746 IIYCLSRTSCEQVAAKLR-NDYGLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFG 804
Query: 486 RGID 497
G+D
Sbjct: 805 MGVD 808
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 29.9 bits (64), Expect = 0.36
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPD-DVLEVSRCFMRDPVRI 189
++ VLDE D ++ GF++ + + L + +I ++P V + M+D V+
Sbjct: 295 VRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLSIPSRKVTMLCSATMKDTVKR 354
Query: 190 L 192
L
Sbjct: 355 L 355
Score = 29.9 bits (64), Expect = 0.36
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +3
Query: 381 VSAMHGDMDQREREVIMRQFRTGS---SRVLITTDLLARGIDVQQV 509
V +HG + Q+ R + F + S +L+ TD+ ARG+D+ V
Sbjct: 470 VYRLHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNV 515
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 402 MDQREREVIMRQFRTGSSRVLITTDLLARGIDV 500
M R ++ + +F+TG VLI T + GIDV
Sbjct: 407 MTFRRQKDTLHKFKTGKYNVLIATAVAEEGIDV 439
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 384 SAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDV 500
SA M+Q +++ + QFR G L+ T + G+D+
Sbjct: 509 SAYSTGMNQMQQKETIDQFRAGVINTLVATSIGEEGLDI 547
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 402 MDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQV 509
M Q+ + ++QF+ G LI T + G+D+ +V
Sbjct: 476 MSQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEV 511
>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 523
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = -3
Query: 394 CIADTVKSRRCIDSVSQSTLRRVL--QKITACAIDSVSYRSHRVS 266
C DT + RC+ +RR+L IT +S Y SH S
Sbjct: 112 CERDTFQGERCLYGALNDNIRRMLLSYDITKAIDESQPYASHITS 156
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 40 DEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVL 150
+EMLS +H V+ S + + LS+T P+ +L
Sbjct: 299 EEMLSPSSLYTLHQVYTATSESINIKTLSSTTPEYIL 335
>SPAC23H3.03c |||nitrogen permease regulator
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 193 VQKEELTLEGIKQFYIAIELENGSWKLCVTCMIHCLLH 306
VQK + GI EL N S++ C CM H L +
Sbjct: 213 VQKVYPFINGINSVQRIAELANVSYRSCQKCMEHFLYY 250
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = -2
Query: 425 HFTLTLIHVSMHSRYSKVTQMHRFSEPIHLATGVAENYSLCNRQCIIQVTQSFQ 264
HF L ++ S S K +H F+ +T + + +C R+C+I + QS+Q
Sbjct: 256 HFLLRIVSFSGDSSL-KSFSLHFFALQF-FSTSLIQYTHIC-RKCVITILQSYQ 306
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,896,818
Number of Sequences: 5004
Number of extensions: 58938
Number of successful extensions: 223
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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