Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0239
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       53   3e-09
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               24   1.2  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    24   1.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   4.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   4.8  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   8.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.3  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 52.8 bits (121), Expect = 3e-09
 Identities = 20/74 (27%), Positives = 45/74 (60%)
 Frame = +3

Query: 288 DTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLI 467
           D+ ++   ++F   ++K D++   +   ++  +++HGD  QR+RE  +  F++G   +L+
Sbjct: 447 DSGTLGGTLVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQREEALADFKSGRMSILV 506

Query: 468 TTDLLARGIDVQQV 509
            T + ARG+D++ V
Sbjct: 507 ATAVAARGLDIKNV 520



 Score = 39.1 bits (87), Expect = 4e-05
 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
 Frame = +1

Query: 7   NTIKLFVLDEADEMLSRGFKDQI-----HDVFKMLSADVQVILLSATMPDDVLEVSRCFM 171
           ++++  VLDEAD ML  GF   I     H+    L  + Q ++ SAT PD+V  ++R F+
Sbjct: 346 SSVQFLVLDEADRMLDMGFLPSIEKMVDHETMVPL-GERQTLMFSATFPDEVQHLARRFL 404

Query: 172 RD 177
            +
Sbjct: 405 NN 406



 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 509 SCVINYDLPSNRENY 553
           S VINYDLP   + Y
Sbjct: 521 SHVINYDLPKGIDEY 535


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -3

Query: 370 RRCIDSVSQSTLRRVLQKITACAIDSVSY 284
           R+C+D+          QK + C ID V +
Sbjct: 99  RQCVDNAKNEDKCLTAQKFSRCVIDYVKF 127


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +2

Query: 122 SLLPCLMMYWKYLDAL*EILYAYLYRRKSLPWKVLNNF 235
           +++ C M  +  +     I Y ++  R  LPW   NN+
Sbjct: 67  AVMSCWMNVYYIVILAWAIFYFFMSMRSELPWGSCNNY 104


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -1

Query: 669 LVW*KSSISLPVLSCQLP 616
           L+W + +  +P+ +C LP
Sbjct: 435 LIWARGTKDIPISACSLP 452


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -1

Query: 669 LVW*KSSISLPVLSCQLP 616
           L+W + +  +P+ +C LP
Sbjct: 525 LIWARGTKDIPISACSLP 542


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 66  LETSGQHFISFIKNKKFDGVGM 1
           L+    H I+ I +K F GVG+
Sbjct: 120 LQVFRDHLINQIPDKSFPGVGV 141


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 13/58 (22%), Positives = 24/58 (41%)
 Frame = +1

Query: 121 LSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELENGSWKLCVTCMIH 294
           ++  M  D +   R   R+  RIL   ++ +    ++  +A ELE+    L      H
Sbjct: 129 IAVGMSRDAVRFGRVPKREKARILAAMQQSSHSRSQEKAVAAELEDEQRLLATVVQAH 186


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,066
Number of Sequences: 438
Number of extensions: 3996
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)