Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0239
(687 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 148 4e-36
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 148 4e-36
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 146 9e-36
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 138 2e-33
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 122 3e-28
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 71 7e-13
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 71 7e-13
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 71 7e-13
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 68 7e-12
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 66 3e-11
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 64 6e-11
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 64 6e-11
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 64 1e-10
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 64 1e-10
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 64 1e-10
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 62 3e-10
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 62 3e-10
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 62 3e-10
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 61 6e-10
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 61 6e-10
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 61 6e-10
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 61 8e-10
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 60 1e-09
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 60 1e-09
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 59 2e-09
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 58 7e-09
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 57 1e-08
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 56 2e-08
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 55 4e-08
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 55 5e-08
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 54 7e-08
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 54 9e-08
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 54 1e-07
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 52 3e-07
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 52 4e-07
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 52 4e-07
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 52 4e-07
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 52 4e-07
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 51 8e-07
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 51 8e-07
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 50 1e-06
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 50 2e-06
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 49 3e-06
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 47 1e-05
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 47 1e-05
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 46 2e-05
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 46 2e-05
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 46 2e-05
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 46 3e-05
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 45 5e-05
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 45 5e-05
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 45 5e-05
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 44 9e-05
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 44 1e-04
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 43 2e-04
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 42 3e-04
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 42 3e-04
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 42 4e-04
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 39 0.003
At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative 37 0.014
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 36 0.033
At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative simila... 36 0.033
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 35 0.044
At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative EUKARY... 35 0.044
At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli... 35 0.058
At1g60930.1 68414.m06858 DNA helicase, putative strong similarit... 33 0.13
At4g37020.1 68417.m05244 expressed protein 33 0.18
At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly ... 33 0.18
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 32 0.31
At4g32700.1 68417.m04655 DNA-directed DNA polymerase family prot... 31 0.95
At1g03950.1 68414.m00380 SNF7 family protein contains Pfam domai... 30 1.3
At5g01710.1 68418.m00088 expressed protein 30 1.7
At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low si... 29 2.9
At3g06640.1 68416.m00772 protein kinase family protein contains ... 28 5.0
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 28 5.0
At1g05480.1 68414.m00557 SNF2 domain-containing protein / helica... 28 6.7
At5g42120.1 68418.m05128 lectin protein kinase family protein co... 27 8.8
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 148 bits (358), Expect = 4e-36
Identities = 68/85 (80%), Positives = 76/85 (89%)
Frame = +3
Query: 255 EWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMR 434
EWKLETLCDLY+TL+I Q+VIF NTRRKVDWLT+ M RD TVSA HGDMDQ R++IMR
Sbjct: 263 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMR 322
Query: 435 QFRTGSSRVLITTDLLARGIDVQQV 509
+FR+GSSRVLITTDLLARGIDVQQV
Sbjct: 323 EFRSGSSRVLITTDLLARGIDVQQV 347
Score = 124 bits (299), Expect = 6e-29
Identities = 59/97 (60%), Positives = 77/97 (79%)
Frame = +1
Query: 4 ANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPV 183
A+ IK+FVLDEADEMLSRGFKDQI+D+F++L +QV + SATMP + LE++R FM PV
Sbjct: 179 ADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPV 238
Query: 184 RILVQKEELTLEGIKQFYIAIELENGSWKLCVTCMIH 294
RILV+++ELTLEGIKQFY+ +E E WKL C ++
Sbjct: 239 RILVKRDELTLEGIKQFYVNVEKE--EWKLETLCDLY 273
Score = 35.9 bits (79), Expect = 0.025
Identities = 21/59 (35%), Positives = 27/59 (45%)
Frame = +2
Query: 509 SCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTGS*QESTGRDIEDFYHTSIVEMP 685
S VIN+DLP+ ENY NFVT E DI+ FY+ + E+P
Sbjct: 348 SLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD-DERMLFDIQKFYNVVVEELP 405
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 148 bits (358), Expect = 4e-36
Identities = 68/85 (80%), Positives = 76/85 (89%)
Frame = +3
Query: 255 EWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMR 434
EWKLETLCDLY+TL+I Q+VIF NTRRKVDWLT+ M RD TVSA HGDMDQ R++IMR
Sbjct: 265 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMR 324
Query: 435 QFRTGSSRVLITTDLLARGIDVQQV 509
+FR+GSSRVLITTDLLARGIDVQQV
Sbjct: 325 EFRSGSSRVLITTDLLARGIDVQQV 349
Score = 124 bits (300), Expect = 4e-29
Identities = 59/97 (60%), Positives = 78/97 (80%)
Frame = +1
Query: 4 ANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPV 183
A+ IK+FVLDEADEMLSRGFKDQI+D+F++L + VQV + SATMP + LE++R FM PV
Sbjct: 181 ADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITRKFMNKPV 240
Query: 184 RILVQKEELTLEGIKQFYIAIELENGSWKLCVTCMIH 294
RILV+++ELTLEGIKQFY+ ++ E WKL C ++
Sbjct: 241 RILVKRDELTLEGIKQFYVNVDKE--EWKLETLCDLY 275
Score = 36.3 bits (80), Expect = 0.019
Identities = 21/59 (35%), Positives = 28/59 (47%)
Frame = +2
Query: 509 SCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTGS*QESTGRDIEDFYHTSIVEMP 685
S VIN+DLP+ ENY NF+T S E DI+ FY+ + E+P
Sbjct: 350 SLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMT-SEDERMMADIQRFYNVVVEELP 407
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 146 bits (355), Expect = 9e-36
Identities = 67/85 (78%), Positives = 76/85 (89%)
Frame = +3
Query: 255 EWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMR 434
+WKLETLCDLY+TL+I Q+VIF NTRRKVDWLT+ M RD TVSA HGDMDQ R++IMR
Sbjct: 263 DWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMR 322
Query: 435 QFRTGSSRVLITTDLLARGIDVQQV 509
+FR+GSSRVLITTDLLARGIDVQQV
Sbjct: 323 EFRSGSSRVLITTDLLARGIDVQQV 347
Score = 122 bits (295), Expect = 2e-28
Identities = 58/94 (61%), Positives = 76/94 (80%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 192
IK+FVLDEADEMLSRGFKDQI+D+F++L +QV + SATMP + LE++R FM PVRIL
Sbjct: 182 IKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRIL 241
Query: 193 VQKEELTLEGIKQFYIAIELENGSWKLCVTCMIH 294
V+++ELTLEGIKQFY+ +E E+ WKL C ++
Sbjct: 242 VKRDELTLEGIKQFYVNVEKED--WKLETLCDLY 273
Score = 35.1 bits (77), Expect = 0.044
Identities = 21/59 (35%), Positives = 27/59 (45%)
Frame = +2
Query: 509 SCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTGS*QESTGRDIEDFYHTSIVEMP 685
S VIN+DLP+ ENY NFVT Q DI+ FY+ + E+P
Sbjct: 348 SLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDQRML-FDIQKFYNVVVEELP 405
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 138 bits (335), Expect = 2e-33
Identities = 62/85 (72%), Positives = 74/85 (87%)
Frame = +3
Query: 255 EWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMR 434
EWK +TLCDLYDTL+I QAVIFCNT+RKVD+L+E M +FTVS+MHGDM Q+ER+ IM
Sbjct: 259 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMN 318
Query: 435 QFRTGSSRVLITTDLLARGIDVQQV 509
+FR+G SRVLITTD+ ARGIDVQQV
Sbjct: 319 EFRSGDSRVLITTDVWARGIDVQQV 343
Score = 118 bits (285), Expect = 3e-27
Identities = 54/94 (57%), Positives = 76/94 (80%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 192
IKL +LDE+DEMLSRGFKDQI+DV++ L D+QV L+SAT+P ++LE++ FM +PV+IL
Sbjct: 178 IKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLVSATLPHEILEMTSKFMTEPVKIL 237
Query: 193 VQKEELTLEGIKQFYIAIELENGSWKLCVTCMIH 294
V+++ELTLEGIKQF++A+E E WK C ++
Sbjct: 238 VKRDELTLEGIKQFFVAVEKE--EWKFDTLCDLY 269
Score = 41.5 bits (93), Expect = 5e-04
Identities = 26/59 (44%), Positives = 28/59 (47%)
Frame = +2
Query: 509 SCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTGS*QESTGRDIEDFYHTSIVEMP 685
S VINYDLP+NRE Y NFV S RDIE +Y T I EMP
Sbjct: 344 SLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVK-SDDIKILRDIEQYYSTQIDEMP 401
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 122 bits (293), Expect = 3e-28
Identities = 56/85 (65%), Positives = 67/85 (78%)
Frame = +3
Query: 255 EWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMR 434
EWK +TLCDLY L+I QA+IFCNTR+KVDWLTE M +F VS+MHGD Q+ER+ IM
Sbjct: 246 EWKFDTLCDLYGRLTINQAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMN 305
Query: 435 QFRTGSSRVLITTDLLARGIDVQQV 509
QFR+ SRVLI +D+ ARGIDVQ V
Sbjct: 306 QFRSFKSRVLIASDVWARGIDVQTV 330
Score = 115 bits (276), Expect = 3e-26
Identities = 52/94 (55%), Positives = 73/94 (77%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 192
+KL VLDE+DEMLS+G KDQI+DV++ L D+QV L+SAT+P ++LE++ FM DPVRIL
Sbjct: 165 VKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQVCLISATLPQEILEMTEKFMTDPVRIL 224
Query: 193 VQKEELTLEGIKQFYIAIELENGSWKLCVTCMIH 294
V+ +ELTLEGIKQ+Y+ ++ E WK C ++
Sbjct: 225 VKPDELTLEGIKQYYVDVDKE--EWKFDTLCDLY 256
Score = 36.3 bits (80), Expect = 0.019
Identities = 23/59 (38%), Positives = 27/59 (45%)
Frame = +2
Query: 509 SCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTGS*QESTGRDIEDFYHTSIVEMP 685
S VINYD+P+N E Y NFV S + +DIE Y T I EMP
Sbjct: 331 SHVINYDIPNNPELYIHRIGRAGRFGREGVAINFVKSSDMKDL-KDIERHYGTKIREMP 388
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 70.9 bits (166), Expect = 7e-13
Identities = 31/71 (43%), Positives = 50/71 (70%)
Frame = +3
Query: 303 AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLL 482
++ +IFC+T+R D LT ++ R F +A+HGD Q ER+ ++ QFR+G + VL+ TD+
Sbjct: 404 SKVIIFCSTKRMCDQLTRNL-TRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVA 462
Query: 483 ARGIDVQQVPA 515
ARG+DV+ + A
Sbjct: 463 ARGLDVKDIRA 473
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/59 (33%), Positives = 33/59 (55%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRI 189
I VLDEAD ML GF+ QI + K + Q ++ +AT P V +++ + +P ++
Sbjct: 305 ISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQV 363
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 70.9 bits (166), Expect = 7e-13
Identities = 31/71 (43%), Positives = 50/71 (70%)
Frame = +3
Query: 303 AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLL 482
++ +IFC+T+R D LT ++ R F +A+HGD Q ER+ ++ QFR+G + VL+ TD+
Sbjct: 404 SKVIIFCSTKRMCDQLTRNL-TRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVA 462
Query: 483 ARGIDVQQVPA 515
ARG+DV+ + A
Sbjct: 463 ARGLDVKDIRA 473
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/59 (33%), Positives = 33/59 (55%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRI 189
I VLDEAD ML GF+ QI + K + Q ++ +AT P V +++ + +P ++
Sbjct: 305 ISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQV 363
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 70.9 bits (166), Expect = 7e-13
Identities = 31/71 (43%), Positives = 50/71 (70%)
Frame = +3
Query: 303 AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLL 482
++ +IFC+T+R D LT ++ R F +A+HGD Q ER+ ++ QFR+G + VL+ TD+
Sbjct: 404 SKVIIFCSTKRMCDQLTRNL-TRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVA 462
Query: 483 ARGIDVQQVPA 515
ARG+DV+ + A
Sbjct: 463 ARGLDVKDIRA 473
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/59 (33%), Positives = 33/59 (55%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRI 189
I VLDEAD ML GF+ QI + K + Q ++ +AT P V +++ + +P ++
Sbjct: 305 ISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQV 363
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 67.7 bits (158), Expect = 7e-12
Identities = 29/69 (42%), Positives = 48/69 (69%)
Frame = +3
Query: 303 AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLL 482
++ +IFC+T+R D L ++ R F +A+HGD Q ER+ ++ QFR+G + VL+ TD+
Sbjct: 475 SKIIIFCSTKRMCDQLARNL-TRTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVA 533
Query: 483 ARGIDVQQV 509
ARG+DV+ +
Sbjct: 534 ARGLDVKDI 542
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/59 (30%), Positives = 33/59 (55%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRI 189
+ VLDEAD ML GF+ QI + + Q ++ +AT P +V +++ + +P ++
Sbjct: 376 VSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKIAADLLVNPAQV 434
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 65.7 bits (153), Expect = 3e-11
Identities = 30/69 (43%), Positives = 46/69 (66%)
Frame = +3
Query: 303 AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLL 482
++ +IFC+T+R D L S+ R F +HGD Q ER+ ++ QFR+G S VLI TD+
Sbjct: 681 SKVIIFCSTKRLCDHLARSVG-RHFGAVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVA 739
Query: 483 ARGIDVQQV 509
ARG+D++ +
Sbjct: 740 ARGLDIKDI 748
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 192
+ L VLDEAD ML GF+ QI + + Q ++ +AT P +V +++ + +PV++
Sbjct: 582 VSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVN 641
Query: 193 VQK-EELTLEGIKQFYIAI 246
+ + +EL Y+ +
Sbjct: 642 IGRVDELAANKAITQYVEV 660
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 64.5 bits (150), Expect = 6e-11
Identities = 26/66 (39%), Positives = 44/66 (66%)
Frame = +3
Query: 312 VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 491
++F T+R D L + + +F +++HGD Q+EREV +R F+TG + +L+ TD+ ARG
Sbjct: 412 LVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARG 471
Query: 492 IDVQQV 509
+D+ V
Sbjct: 472 LDIPHV 477
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADV----QVILLSATMPDDVLEVSRCFMRDP 180
I+ LDEAD ML GF+ QI + + + Q +L SAT P + ++ FM +
Sbjct: 304 IRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNY 363
Query: 181 VRILV 195
+ + V
Sbjct: 364 IFLAV 368
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 64.5 bits (150), Expect = 6e-11
Identities = 26/66 (39%), Positives = 44/66 (66%)
Frame = +3
Query: 312 VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 491
++F T+R D L + + +F +++HGD Q+EREV +R F+TG + +L+ TD+ ARG
Sbjct: 412 LVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARG 471
Query: 492 IDVQQV 509
+D+ V
Sbjct: 472 LDIPHV 477
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADV----QVILLSATMPDDVLEVSRCFMRDP 180
I+ LDEAD ML GF+ QI + + + Q +L SAT P + ++ FM +
Sbjct: 304 IRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNY 363
Query: 181 VRILV 195
+ + V
Sbjct: 364 IFLAV 368
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 63.7 bits (148), Expect = 1e-10
Identities = 34/84 (40%), Positives = 54/84 (64%), Gaps = 3/84 (3%)
Frame = +1
Query: 13 IKLFVLDEADEML-SRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRI 189
++ F+LDE D+ML S + + ++FKM D QV++ SAT+ ++ V + FM+DP+ I
Sbjct: 191 VRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEI 250
Query: 190 LVQKE-ELTLEGIKQFYIAI-ELE 255
V E +LTL G+ Q YI + E+E
Sbjct: 251 YVDDEAKLTLHGLVQHYIKLSEME 274
Score = 54.8 bits (126), Expect = 5e-08
Identities = 29/83 (34%), Positives = 43/83 (51%)
Frame = +3
Query: 261 KLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQF 440
K L DL D L Q VIF + + L + + +F +H M Q ER + F
Sbjct: 275 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSF 334
Query: 441 RTGSSRVLITTDLLARGIDVQQV 509
+ G R+L+ TDL+ RGID+++V
Sbjct: 335 KEGHKRILVATDLVGRGIDIERV 357
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 63.7 bits (148), Expect = 1e-10
Identities = 34/84 (40%), Positives = 54/84 (64%), Gaps = 3/84 (3%)
Frame = +1
Query: 13 IKLFVLDEADEML-SRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRI 189
++ F+LDE D+ML S + + ++FKM D QV++ SAT+ ++ V + FM+DP+ I
Sbjct: 108 VRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEI 167
Query: 190 LVQKE-ELTLEGIKQFYIAI-ELE 255
V E +LTL G+ Q YI + E+E
Sbjct: 168 YVDDEAKLTLHGLVQHYIKLSEME 191
Score = 55.6 bits (128), Expect = 3e-08
Identities = 29/83 (34%), Positives = 43/83 (51%)
Frame = +3
Query: 261 KLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQF 440
K L DL D L Q VIF + + L + + +F +H M Q ER + F
Sbjct: 192 KTRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSF 251
Query: 441 RTGSSRVLITTDLLARGIDVQQV 509
+ G R+L+ TDL+ RGID+++V
Sbjct: 252 KEGHKRILVATDLVGRGIDIERV 274
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 63.7 bits (148), Expect = 1e-10
Identities = 34/84 (40%), Positives = 54/84 (64%), Gaps = 3/84 (3%)
Frame = +1
Query: 13 IKLFVLDEADEML-SRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRI 189
++ F+LDE D+ML S + + ++FKM D QV++ SAT+ ++ V + FM+DP+ I
Sbjct: 191 VRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEI 250
Query: 190 LVQKE-ELTLEGIKQFYIAI-ELE 255
V E +LTL G+ Q YI + E+E
Sbjct: 251 YVDDEAKLTLHGLVQHYIKLSEME 274
Score = 55.6 bits (128), Expect = 3e-08
Identities = 29/83 (34%), Positives = 43/83 (51%)
Frame = +3
Query: 261 KLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQF 440
K L DL D L Q VIF + + L + + +F +H M Q ER + F
Sbjct: 275 KTRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSF 334
Query: 441 RTGSSRVLITTDLLARGIDVQQV 509
+ G R+L+ TDL+ RGID+++V
Sbjct: 335 KEGHKRILVATDLVGRGIDIERV 357
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 62.5 bits (145), Expect = 3e-10
Identities = 26/69 (37%), Positives = 43/69 (62%)
Frame = +3
Query: 303 AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLL 482
A ++F T++ D L + + F + +HGD Q+EREV +R F+TG + +L+ TD+
Sbjct: 406 ALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVA 465
Query: 483 ARGIDVQQV 509
ARG+D+ V
Sbjct: 466 ARGLDIPHV 474
Score = 36.7 bits (81), Expect = 0.014
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADV----QVILLSATMPDDVLEVSRCFMRDP 180
++ LDEAD ML GF+ QI + + + Q +L SAT P ++ ++ F+ +
Sbjct: 299 VRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPREIQRLASDFLSNY 358
Query: 181 VRILV 195
+ + V
Sbjct: 359 IFLAV 363
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 62.1 bits (144), Expect = 3e-10
Identities = 30/83 (36%), Positives = 47/83 (56%)
Frame = +3
Query: 261 KLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQF 440
K+ L L+ L I Q++IFCN+ +V+ L + + ++ +H M Q R + +F
Sbjct: 348 KVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEF 407
Query: 441 RTGSSRVLITTDLLARGIDVQQV 509
R G+ R L+ TDL RGID+Q V
Sbjct: 408 RNGACRNLVCTDLFTRGIDIQAV 430
Score = 48.4 bits (110), Expect = 4e-06
Identities = 24/77 (31%), Positives = 44/77 (57%)
Frame = +1
Query: 19 LFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQ 198
+ V+DEAD++LS F+ + ++ + L + Q ++ SAT P V +R P ++
Sbjct: 269 MLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATFPVTVKAFKDRHLRKPY-VINL 327
Query: 199 KEELTLEGIKQFYIAIE 249
++LTL G+ Q+Y +E
Sbjct: 328 MDQLTLMGVTQYYAFVE 344
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 62.1 bits (144), Expect = 3e-10
Identities = 30/83 (36%), Positives = 47/83 (56%)
Frame = +3
Query: 261 KLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQF 440
K+ L L+ L I Q++IFCN+ +V+ L + + ++ +H M Q R + +F
Sbjct: 348 KVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEF 407
Query: 441 RTGSSRVLITTDLLARGIDVQQV 509
R G+ R L+ TDL RGID+Q V
Sbjct: 408 RNGACRNLVCTDLFTRGIDIQAV 430
Score = 48.4 bits (110), Expect = 4e-06
Identities = 24/77 (31%), Positives = 44/77 (57%)
Frame = +1
Query: 19 LFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQ 198
+ V+DEAD++LS F+ + ++ + L + Q ++ SAT P V +R P ++
Sbjct: 269 MLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATFPVTVKAFKDRHLRKPY-VINL 327
Query: 199 KEELTLEGIKQFYIAIE 249
++LTL G+ Q+Y +E
Sbjct: 328 MDQLTLMGVTQYYAFVE 344
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 61.3 bits (142), Expect = 6e-10
Identities = 30/83 (36%), Positives = 46/83 (55%)
Frame = +3
Query: 261 KLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQF 440
K+ L L+ L I Q++IFCN+ +V+ L + + ++ +H M Q R + F
Sbjct: 355 KIHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDF 414
Query: 441 RTGSSRVLITTDLLARGIDVQQV 509
R G+ R L+ TDL RGID+Q V
Sbjct: 415 RNGACRNLVCTDLFTRGIDIQAV 437
Score = 55.2 bits (127), Expect = 4e-08
Identities = 27/77 (35%), Positives = 46/77 (59%)
Frame = +1
Query: 19 LFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQ 198
+ V+DEAD++LS+ F+ + + L Q+++ SAT P V + F+ +P ++
Sbjct: 276 VLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSATFPVTVKDFKDRFLTNPY-VINL 334
Query: 199 KEELTLEGIKQFYIAIE 249
+ELTL+GI QFY +E
Sbjct: 335 MDELTLKGITQFYAFVE 351
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 61.3 bits (142), Expect = 6e-10
Identities = 30/83 (36%), Positives = 46/83 (55%)
Frame = +3
Query: 261 KLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQF 440
K+ L L+ L I Q++IFCN+ +V+ L + + ++ +H M Q R + F
Sbjct: 355 KIHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDF 414
Query: 441 RTGSSRVLITTDLLARGIDVQQV 509
R G+ R L+ TDL RGID+Q V
Sbjct: 415 RNGACRNLVCTDLFTRGIDIQAV 437
Score = 55.2 bits (127), Expect = 4e-08
Identities = 27/77 (35%), Positives = 46/77 (59%)
Frame = +1
Query: 19 LFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQ 198
+ V+DEAD++LS+ F+ + + L Q+++ SAT P V + F+ +P ++
Sbjct: 276 VLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSATFPVTVKDFKDRFLTNPY-VINL 334
Query: 199 KEELTLEGIKQFYIAIE 249
+ELTL+GI QFY +E
Sbjct: 335 MDELTLKGITQFYAFVE 351
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 61.3 bits (142), Expect = 6e-10
Identities = 30/83 (36%), Positives = 46/83 (55%)
Frame = +3
Query: 261 KLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQF 440
K+ L L+ L I Q++IFCN+ +V+ L + + ++ +H M Q R + F
Sbjct: 378 KVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDF 437
Query: 441 RTGSSRVLITTDLLARGIDVQQV 509
R G+ R L+ TDL RGID+Q V
Sbjct: 438 RNGACRNLVCTDLFTRGIDIQAV 460
Score = 50.8 bits (116), Expect = 8e-07
Identities = 25/77 (32%), Positives = 45/77 (58%)
Frame = +1
Query: 19 LFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQ 198
+ V+DEAD++LS F+ I ++ + L Q+++ SAT P V +++ P I+
Sbjct: 299 MLVMDEADKLLSVEFQPSIEELIQFLPESRQILMFSATFPVTVKSFKDRYLKKPY-IINL 357
Query: 199 KEELTLEGIKQFYIAIE 249
++LTL G+ Q+Y +E
Sbjct: 358 MDQLTLMGVTQYYAFVE 374
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 60.9 bits (141), Expect = 8e-10
Identities = 29/84 (34%), Positives = 48/84 (57%)
Frame = +3
Query: 258 WKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQ 437
W LE L + D ++F + + VD + + L F V+A+HGD DQ R +++
Sbjct: 462 WLLEKLPGMIDE---GDVLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQK 518
Query: 438 FRTGSSRVLITTDLLARGIDVQQV 509
F++G VLI TD+ ARG+D++ +
Sbjct: 519 FKSGVHHVLIATDVAARGLDIKSL 542
Score = 54.4 bits (125), Expect = 7e-08
Identities = 27/69 (39%), Positives = 40/69 (57%)
Frame = +1
Query: 25 VLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKE 204
VLDEAD M GF+ Q+ + + D Q +L SATMP V +++R + DP+R+ V +
Sbjct: 380 VLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPWKVEKLAREILSDPIRVTVGEV 439
Query: 205 ELTLEGIKQ 231
+ E I Q
Sbjct: 440 GMANEDITQ 448
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 60.5 bits (140), Expect = 1e-09
Identities = 25/69 (36%), Positives = 44/69 (63%)
Frame = +3
Query: 303 AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLL 482
A ++F T+R D L + + F +++HGD Q+EREV ++ F++G + +L+ TD+
Sbjct: 419 ALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVA 478
Query: 483 ARGIDVQQV 509
ARG+D+ V
Sbjct: 479 ARGLDIPHV 487
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADV----QVILLSATMPDDVLEVSRCFMRDP 180
I+ LDEAD ML GF+ QI + + + Q +L SAT P ++ ++ F+ +
Sbjct: 312 IRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFPREIQRLAADFLANY 371
Query: 181 VRILV 195
+ + V
Sbjct: 372 IFLAV 376
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 60.1 bits (139), Expect = 1e-09
Identities = 24/76 (31%), Positives = 48/76 (63%)
Frame = +3
Query: 282 LYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRV 461
L D + ++ ++F +T++ D +T + + + ++HGD Q ER+ ++ +FR+G S +
Sbjct: 338 LEDIMDGSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPI 397
Query: 462 LITTDLLARGIDVQQV 509
+ TD+ ARG+DV+ V
Sbjct: 398 MTATDVAARGLDVKDV 413
Score = 51.2 bits (117), Expect = 6e-07
Identities = 23/66 (34%), Positives = 38/66 (57%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 192
+ VLDEAD ML GF QI + + D Q + SAT P +V ++S+ F+ +P +++
Sbjct: 247 VTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLSKKFLYNPYKVI 306
Query: 193 VQKEEL 210
+ +L
Sbjct: 307 IGSSDL 312
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 59.3 bits (137), Expect = 2e-09
Identities = 27/83 (32%), Positives = 45/83 (54%)
Frame = +3
Query: 261 KLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQF 440
K L L D L A++F NT++ D + +++ + V+ +HG Q +RE+ + F
Sbjct: 563 KFFRLQKLLDELGEKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQREISLEGF 622
Query: 441 RTGSSRVLITTDLLARGIDVQQV 509
R VL+ TD++ RGID+ V
Sbjct: 623 RAKRYNVLVATDVVGRGIDIPDV 645
Score = 33.9 bits (74), Expect = 0.10
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 17/98 (17%)
Frame = +1
Query: 7 NTIKLFVLDEADEMLSRGFKDQIHDVFK-MLSADVQ----------------VILLSATM 135
N VLDEAD M+ GF+ Q+ V M S++++ + SATM
Sbjct: 462 NQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEEELDEKKIYRTTYMFSATM 521
Query: 136 PDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIE 249
P V ++R ++R+PV + + T + I Q I ++
Sbjct: 522 PPGVERLARKYLRNPVVVTIGTAGKTTDLISQHVIMMK 559
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 57.6 bits (133), Expect = 7e-09
Identities = 23/69 (33%), Positives = 44/69 (63%)
Frame = +3
Query: 303 AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLL 482
++ +IF T+R D +T + + + A+HGD Q ER+ ++ +F++G S ++ TD+
Sbjct: 411 SKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVA 470
Query: 483 ARGIDVQQV 509
ARG+DV+ +
Sbjct: 471 ARGLDVKDI 479
Score = 56.0 bits (129), Expect = 2e-08
Identities = 26/66 (39%), Positives = 39/66 (59%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 192
+ VLDEAD ML GF+ QI + + D Q +L SAT P +V ++R F+RDP + +
Sbjct: 313 VTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQFLRDPYKAI 372
Query: 193 VQKEEL 210
+ +L
Sbjct: 373 IGSTDL 378
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/68 (38%), Positives = 41/68 (60%)
Frame = +3
Query: 306 QAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 485
+ ++F T+R D L+ ++ R F A+HGD+ Q +RE + FR G +L+ TD+ A
Sbjct: 351 KCIVFTQTKRDADRLSYAL-ARSFKCEALHGDISQSQRERTLAGFRDGHFNILVATDVAA 409
Query: 486 RGIDVQQV 509
RG+DV V
Sbjct: 410 RGLDVPNV 417
Score = 44.4 bits (100), Expect = 7e-05
Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDP--VR 186
++ VLDEAD+ML GF + + + + L Q ++ SATMP + +++ ++ +P V
Sbjct: 251 VQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWIRSLTKKYLNNPLTVD 310
Query: 187 ILVQKEELTLEGIKQFYI 240
++ ++ +GI + I
Sbjct: 311 LVGDSDQKLADGITTYSI 328
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 56.0 bits (129), Expect = 2e-08
Identities = 26/66 (39%), Positives = 39/66 (59%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 192
+ VLDEAD ML GF+ QI + + D Q +L SAT P +V ++R F+RDP + +
Sbjct: 313 VTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQFLRDPYKAI 372
Query: 193 VQKEEL 210
+ +L
Sbjct: 373 IGSTDL 378
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/74 (31%), Positives = 43/74 (58%)
Frame = +3
Query: 303 AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLL 482
++ +IF T+R D +T + + + A+HGD Q ER+ ++ +F++G S ++ TD+
Sbjct: 411 SKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVA 470
Query: 483 ARGIDVQQVPASST 524
ARG+ + ST
Sbjct: 471 ARGLVSSGIREKST 484
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 55.2 bits (127), Expect = 4e-08
Identities = 31/79 (39%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRI- 189
++ VLDEAD+ML+ GF++ + + + L Q +L SATMP V +++R ++ +P+ I
Sbjct: 253 VEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNID 312
Query: 190 LV-QKEELTLEGIKQFYIA 243
LV ++E EGIK + IA
Sbjct: 313 LVGDQDEKLAEGIKLYAIA 331
Score = 51.6 bits (118), Expect = 5e-07
Identities = 22/68 (32%), Positives = 39/68 (57%)
Frame = +3
Query: 306 QAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 485
+ ++F T+R D ++ ++ A+HGD+ Q +RE + FR G VL+ TD+ +
Sbjct: 353 KTIVFTQTKRDADEVSLALS-NSIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVAS 411
Query: 486 RGIDVQQV 509
RG+D+ V
Sbjct: 412 RGLDIPNV 419
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 54.8 bits (126), Expect = 5e-08
Identities = 24/82 (29%), Positives = 44/82 (53%)
Frame = +1
Query: 10 TIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRI 189
T++ V DEAD + GF +Q+H + LS + Q +L SAT+P + E ++ +R+P +
Sbjct: 173 TVEYVVFDEADSLFGMGFAEQLHQILTQLSENRQTLLFSATLPSALAEFAKAGLREPQLV 232
Query: 190 LVQKEELTLEGIKQFYIAIELE 255
+ E +K ++ + E
Sbjct: 233 RLDVENKISPDLKLSFLTVRPE 254
Score = 54.0 bits (124), Expect = 9e-08
Identities = 24/65 (36%), Positives = 40/65 (61%)
Frame = +3
Query: 306 QAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 485
Q +IF +T+ V+++ L + S +GDMDQ R++ + +FR + +LI TD+ A
Sbjct: 273 QTLIFVSTKHHVEFVNSLFKLENIEPSVCYGDMDQDARKIHVSRFRARKTMLLIVTDIAA 332
Query: 486 RGIDV 500
RGID+
Sbjct: 333 RGIDI 337
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 54.4 bits (125), Expect = 7e-08
Identities = 25/84 (29%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Frame = +3
Query: 261 KLETLCD-LYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQ 437
K+E + D + + I Q +IF T+ + +++ + V+++HG++ + +R+ I+++
Sbjct: 326 KIEVIKDQIMELGDIGQTIIFVKTKASAQKVHKALAEMGYDVTSVHGNLTESDRDKIVKE 385
Query: 438 FRTGSSRVLITTDLLARGIDVQQV 509
F+ ++VLI TD++ARG D Q+V
Sbjct: 386 FKECLTQVLIATDVIARGFDQQRV 409
Score = 53.6 bits (123), Expect = 1e-07
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Frame = +1
Query: 7 NTIKLFVLDEADEMLSR-GFKDQIHDVFK---MLSADVQVILLSATMPDDVLEVSRCFMR 174
N +K+ V DEAD ML+ GF+D + K ++ + QV+L SAT + V + ++
Sbjct: 237 NHLKILVFDEADHMLATDGFRDDSLKIMKDIGRVNPNFQVLLFSATFNETVKDFVARTVK 296
Query: 175 DPVRILVQKEELTLEGIKQFYIAIELE 255
DP ++ V++E+L L+ +KQ+ + E
Sbjct: 297 DPNQLFVKREDLALDSVKQYKVVCPKE 323
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 54.0 bits (124), Expect = 9e-08
Identities = 25/90 (27%), Positives = 47/90 (52%)
Frame = +3
Query: 237 HCN*IREWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQRE 416
+C + K++TL L + F N R++ + + R + MHGD+ +
Sbjct: 386 YCISKHQHKVDTLRRCVHALDAQSVIAFMNHSRQLKDVVYKLEARGMNSAEMHGDLGKLG 445
Query: 417 REVIMRQFRTGSSRVLITTDLLARGIDVQQ 506
R ++++F+ G +VL+T +L ARG+DV +
Sbjct: 446 RSTVLKKFKNGEIKVLVTNELSARGLDVAE 475
Score = 41.1 bits (92), Expect = 7e-04
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 14/85 (16%)
Frame = +1
Query: 1 HANTIKLFVLDEADEMLSRGFKDQIHDVFKMLS--------------ADVQVILLSATMP 138
H + + VLDE DE+LS F++ IH + + + A+ Q IL+SAT+P
Sbjct: 264 HTHGCRFLVLDEVDELLSFNFREDIHRILEHVGKRSGAGPKGEVDERANRQTILVSATVP 323
Query: 139 DDVLEVSRCFMRDPVRILVQKEELT 213
V+ ++ + +PV LVQ ++T
Sbjct: 324 FSVIRAAKSWSHEPV--LVQANKVT 346
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 53.6 bits (123), Expect = 1e-07
Identities = 24/68 (35%), Positives = 40/68 (58%)
Frame = +3
Query: 306 QAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 485
+ ++F T+R D L + + + A+HGD+ Q +RE + FR G+ +L+ TD+ A
Sbjct: 363 KCIVFTQTKRDADRLAFGL-AKSYKCEALHGDISQAQRERTLAGFRDGNFSILVATDVAA 421
Query: 486 RGIDVQQV 509
RG+DV V
Sbjct: 422 RGLDVPNV 429
Score = 49.2 bits (112), Expect = 3e-06
Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRI- 189
++ VLDEAD+ML GF + + + + L A Q ++ SATMP + +++ ++ +P+ I
Sbjct: 263 VQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMFSATMPSWIRSLTKKYLNNPLTID 322
Query: 190 LV-QKEELTLEGIKQFYIAIE 249
LV ++ +GI + IA +
Sbjct: 323 LVGDSDQKLADGITMYSIAAD 343
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 52.4 bits (120), Expect = 3e-07
Identities = 25/89 (28%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Frame = +1
Query: 4 ANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPV 183
+ ++ + VLDEAD +LS G++D + V ++ Q +L+SAT DV ++ + + +P+
Sbjct: 198 SESLSILVLDEADLLLSYGYEDNLRSVTSIIPRRCQCLLMSATTSSDVEKLKKLILHNPI 257
Query: 184 RILV----QKEELTLEGIKQFYIAIELEN 258
+ + KEE ++QF+I+ ++
Sbjct: 258 VLTLTEDNDKEEAVPSNVQQFWISCSAQD 286
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/76 (31%), Positives = 45/76 (59%)
Frame = +1
Query: 10 TIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRI 189
++K VLDEAD +L+ F+ ++ + + + + + L SATM V ++ R +R+PV+I
Sbjct: 164 SLKYLVLDEADRLLNEDFEKSLNQILEEIPLERKTFLFSATMTKKVRKLQRACLRNPVKI 223
Query: 190 LVQKEELTLEGIKQFY 237
+ T++ +KQ Y
Sbjct: 224 EAASKYSTVDTLKQQY 239
Score = 36.7 bits (81), Expect = 0.014
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +3
Query: 309 AVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLAR 488
++IF T +L + F + G M Q +R + +F+ G +L+ TD+ +R
Sbjct: 263 SMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVASR 322
Query: 489 GIDVQQV 509
G+D+ V
Sbjct: 323 GLDIPSV 329
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 52.0 bits (119), Expect = 4e-07
Identities = 22/66 (33%), Positives = 37/66 (56%)
Frame = +3
Query: 312 VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 491
+IFC + VD + E + L+ A+HG DQ +RE + F+ G VL+ TD+ ++G
Sbjct: 401 LIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKDVLVATDVASKG 460
Query: 492 IDVQQV 509
+D +
Sbjct: 461 LDFPDI 466
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/60 (36%), Positives = 33/60 (55%)
Frame = +1
Query: 16 KLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILV 195
+ LDEAD ++ GF+D I +VF + Q +L SATMP + +R + PV + V
Sbjct: 304 RYLTLDEADRLVDLGFEDDIREVFDHFKSQRQTLLFSATMPTKIQIFARSALVKPVTVNV 363
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 52.0 bits (119), Expect = 4e-07
Identities = 29/89 (32%), Positives = 48/89 (53%)
Frame = +1
Query: 7 NTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVR 186
+ I FVLDE D ML RGF+DQ+ +F+ LS QV+L SAT+ +V +V ++ +
Sbjct: 259 DNIMTFVLDEVDCMLQRGFRDQVMQIFQALS-QPQVLLFSATISREVEKVGGSLAKEIIL 317
Query: 187 ILVQKEELTLEGIKQFYIAIELENGSWKL 273
+ + + + Q I ++ + KL
Sbjct: 318 VSIGNPNKPNKAVNQLAIWVDAKQKKQKL 346
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +3
Query: 309 AVIFCNTRRKVDWLTESMHL-RDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 485
AV++ ++R D L ++ + ++HG+ +ER +M F G VL++T +L
Sbjct: 360 AVVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLG 419
Query: 486 RGIDV 500
RG+D+
Sbjct: 420 RGVDL 424
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 52.0 bits (119), Expect = 4e-07
Identities = 29/89 (32%), Positives = 48/89 (53%)
Frame = +1
Query: 7 NTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVR 186
+ I FVLDE D ML RGF+DQ+ +F+ LS QV+L SAT+ +V +V ++ +
Sbjct: 122 DNIMTFVLDEVDCMLQRGFRDQVMQIFQALS-QPQVLLFSATISREVEKVGGSLAKEIIL 180
Query: 187 ILVQKEELTLEGIKQFYIAIELENGSWKL 273
+ + + + Q I ++ + KL
Sbjct: 181 VSIGNPNKPNKAVNQLAIWVDAKQKKQKL 209
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +3
Query: 309 AVIFCNTRRKVDWLTESMHL-RDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 485
AV++ ++R D L ++ + ++HG+ +ER +M F G VL++T +L
Sbjct: 223 AVVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLG 282
Query: 486 RGIDV 500
RG+D+
Sbjct: 283 RGVDL 287
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 50.8 bits (116), Expect = 8e-07
Identities = 24/66 (36%), Positives = 36/66 (54%)
Frame = +3
Query: 312 VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 491
++F +T + V + TE M + D VS +HG MDQ R F +L+ TD+ ARG
Sbjct: 338 MVFFSTCKSVQFHTEIMKISDVDVSDIHGGMDQNRRTKTFFDFMKAKKGILLCTDVAARG 397
Query: 492 IDVQQV 509
+D+ V
Sbjct: 398 LDIPSV 403
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 192
+K V+DEAD +L F++ ++ + K+L Q L SAT V +++R + PV +
Sbjct: 237 LKCLVIDEADRILEENFEEDMNKILKILPKTRQTALFSATQTSKVKDLARVSLTSPVHVD 296
Query: 193 VQ--KEELTLEGIKQFYIAI 246
V + ++T EG++Q Y +
Sbjct: 297 VDDGRRKVTNEGLEQGYCVV 316
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 50.8 bits (116), Expect = 8e-07
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLS-ADVQVILLSATMPDDVLEVSRCFMRDPVRI 189
++ VLDE+D++ + QI V K S + L SAT+PD V E++R M D VR+
Sbjct: 283 VEYLVLDESDKLFEQSLLKQIDCVVKACSNPSIIRSLFSATLPDSVEELARSIMHDAVRV 342
Query: 190 LVQKEELTLEGIKQFYIAIELENG 261
++ ++ E +KQ + E G
Sbjct: 343 IIGRKNTASETVKQKLVFAGSEEG 366
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/66 (31%), Positives = 36/66 (54%)
Frame = +3
Query: 312 VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 491
+IF ++ + L + + + +H D+ ERE + QFR G VLI TD++ARG
Sbjct: 384 LIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLIATDVIARG 443
Query: 492 IDVQQV 509
+D + +
Sbjct: 444 MDFKGI 449
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 50.0 bits (114), Expect = 1e-06
Identities = 21/66 (31%), Positives = 37/66 (56%)
Frame = +3
Query: 312 VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 491
+IFC + VD + E + L+ A+HG DQ +R+ + F+ G VL+ TD+ ++G
Sbjct: 352 LIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKG 411
Query: 492 IDVQQV 509
+D +
Sbjct: 412 LDFPDI 417
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/60 (36%), Positives = 32/60 (53%)
Frame = +1
Query: 16 KLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILV 195
+L LDEAD ++ GF+D I VF + Q +L SATMP + + + PV + V
Sbjct: 255 RLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVNV 314
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/67 (35%), Positives = 37/67 (55%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 192
+++ +LDEAD +L FK Q+ + L Q +L SAT V +++R +RDP I
Sbjct: 219 LQILILDEADRVLDSAFKGQLDPIISQLPKHRQTLLFSATQTKKVKDLARLSLRDPEYIS 278
Query: 193 VQKEELT 213
V E +T
Sbjct: 279 VHAEAVT 285
Score = 43.6 bits (98), Expect = 1e-04
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Frame = +3
Query: 255 EWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMH-LRD-FTVSAMHGDMDQREREVI 428
E KL+ L T ++ ++F +T+++V ++ E+ + LR + ++HG M Q +R +
Sbjct: 301 EKKLDMLWSFIKTHLNSRILVFLSTKKQVKFVHEAFNKLRPGIPLKSLHGKMSQEKRMGV 360
Query: 429 MRQFRTGSSRVLITTDLLARGID 497
QF S VL TD+LARG+D
Sbjct: 361 YSQFIERQS-VLFCTDVLARGLD 382
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 49.2 bits (112), Expect = 3e-06
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 192
+K V+DEAD +L + F++ + + +L Q L SAT V +++R + PV I
Sbjct: 302 LKFLVMDEADRILEQNFEEDLKKILNLLPKTRQTSLFSATQSAKVEDLARVSLTSPVYID 361
Query: 193 VQ--KEELTLEGIKQFYIAI 246
V ++E+T EG++Q Y +
Sbjct: 362 VDEGRKEVTNEGLEQGYCVV 381
Score = 33.1 bits (72), Expect = 0.18
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = +3
Query: 312 VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 491
++F +T + + E F + G +DQ +R QF + +L+ T++ ARG
Sbjct: 404 MVFFSTCKSTKFHAELFRYIKFDCLEIRGGIDQNKRTPTFLQFIKAETGILLCTNVAARG 463
Query: 492 IDVQQV 509
+D V
Sbjct: 464 LDFPHV 469
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/62 (33%), Positives = 39/62 (62%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 192
+++ +LDEAD +L GF+ Q++ + L + L SAT + V E+++ +R+PVR+
Sbjct: 168 LEILILDEADRLLEMGFQRQVNYIISRLPKQRRTGLFSATQTEGVEELAKAGLRNPVRVE 227
Query: 193 VQ 198
V+
Sbjct: 228 VR 229
Score = 45.2 bits (102), Expect = 4e-05
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Frame = +3
Query: 261 KLETLCDLYDTLSIAQAVIFCNTRRKVDW----LTESMHLRDFTVSAMHGDMDQREREVI 428
K L DL S + ++F T VD+ L++ L+ ++ +HGDM Q R+
Sbjct: 261 KSSQLVDLLIKNSDKKLIVFFMTCASVDYWGLVLSKIPALKSISLIPIHGDMKQNARDKA 320
Query: 429 MRQFRTGSSRVLITTDLLARGIDV 500
+ F SS L+ TD+ ARG+D+
Sbjct: 321 LASFTKASSGALLCTDVAARGLDI 344
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 46.8 bits (106), Expect = 1e-05
Identities = 25/73 (34%), Positives = 37/73 (50%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 192
+ V+DEAD M GF+ QI + + + D Q +L SAT P V ++R + PV I
Sbjct: 547 VTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVETLARKVLNKPVEIQ 606
Query: 193 VQKEELTLEGIKQ 231
V + + I Q
Sbjct: 607 VGGRSVVNKDITQ 619
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/68 (36%), Positives = 40/68 (58%)
Frame = +3
Query: 306 QAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 485
Q +IF T+ +V +E L D + A+HG++ Q +REV + FR G L+ T++ A
Sbjct: 352 QTIIFAETKVQV---SELSGLLDGS-RALHGEIPQSQREVTLAGFRNGKFATLVATNVAA 407
Query: 486 RGIDVQQV 509
RG+D+ V
Sbjct: 408 RGLDINDV 415
Score = 41.9 bits (94), Expect = 4e-04
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Frame = +1
Query: 25 VLDEADEMLSRGFKDQIHDVFKML--SADVQVILLSATMPDDVLEVSRCFM-RDPVRI-L 192
VLDEADEML GF + + + + S VQ +L SAT+P V +S F+ RD I L
Sbjct: 253 VLDEADEMLRMGFVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDL 312
Query: 193 VQKEELTLEGIKQFYIAIELENGSWKLCVTCMIHC 297
V +++ + +IAI + + +I C
Sbjct: 313 VGNDKMKASNSVR-HIAIPCNKAAMARLIPDIISC 346
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/54 (38%), Positives = 33/54 (61%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMR 174
+KLF++DEAD +L GFK + + L Q +L SAT+P +V VS+ ++
Sbjct: 532 LKLFIVDEADLLLDLGFKRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVLK 585
Score = 33.9 bits (74), Expect = 0.10
Identities = 15/66 (22%), Positives = 31/66 (46%)
Frame = +3
Query: 312 VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 491
++FC+T + + V +H Q R + +F+ + +L+T+D+ ARG
Sbjct: 638 IVFCSTGMVTSLMYTLLREMKLNVREIHARKPQLHRTCVSDEFKESNRLILVTSDVSARG 697
Query: 492 IDVQQV 509
++ V
Sbjct: 698 MNYPDV 703
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 46.0 bits (104), Expect = 2e-05
Identities = 24/73 (32%), Positives = 37/73 (50%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 192
+ V+DEAD M GF+ QI + + + + Q +L SAT P V ++R + PV I
Sbjct: 680 VTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFSATFPRQVETLARKVLNKPVEIQ 739
Query: 193 VQKEELTLEGIKQ 231
V + + I Q
Sbjct: 740 VGGRSVVNKDITQ 752
Score = 44.8 bits (101), Expect = 5e-05
Identities = 20/66 (30%), Positives = 36/66 (54%)
Frame = +3
Query: 312 VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 491
++F ++ K D L M + ++HG DQ +RE + F+ +LI T + ARG
Sbjct: 780 LVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAARG 839
Query: 492 IDVQQV 509
+DV+++
Sbjct: 840 LDVKEL 845
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Frame = +3
Query: 282 LYDTLSI---AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGS 452
LY LS+ + ++FC + + ++ + + V + +M QR R + +FR
Sbjct: 493 LYYILSVHGQGRTIVFCTSVTDLRHISGLLKILGLDVCTLFSEMKQRARLKSIDRFRASE 552
Query: 453 SRVLITTDLLARGIDVQQV 509
+ +LI TDL+ARGID++ V
Sbjct: 553 NGILIATDLVARGIDIKNV 571
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 7 NTIKLFVLDEADEMLSRGFKDQIHDVFKML 96
+++ FVLDEAD M+ RG ++ + +L
Sbjct: 355 HSLSFFVLDEADRMVERGHFRELQSILDLL 384
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 44.8 bits (101), Expect = 5e-05
Identities = 23/73 (31%), Positives = 39/73 (53%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 192
+K+ VLDEAD +L GF+ I + + + Q L SAT+P++V ++ +R +
Sbjct: 210 VKVLVLDEADHLLDMGFRKDIERIISAVPKERQTFLFSATVPEEVRQICLVALRRDHEFV 269
Query: 193 VQKEELTLEGIKQ 231
E T+E +Q
Sbjct: 270 NCVHEGTIETHQQ 282
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = +3
Query: 306 QAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 485
+ ++FC T + + + + V +H Q R + +FR +L+T+D+ A
Sbjct: 314 KVIVFCTTAMVTKLVADLLGELNLNVREIHSRKPQSYRTRVSNEFRKSKGLILVTSDVSA 373
Query: 486 RGIDVQQV 509
RG+D V
Sbjct: 374 RGVDYPDV 381
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 44.8 bits (101), Expect = 5e-05
Identities = 20/54 (37%), Positives = 33/54 (61%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMR 174
+KLF++DEAD +L GF+ + + L Q +L SAT+P +V VS+ ++
Sbjct: 485 LKLFIVDEADLLLDLGFRRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVLK 538
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/66 (22%), Positives = 31/66 (46%)
Frame = +3
Query: 312 VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 491
++FC+T + + V +H Q R + +F+ + +L+T+D+ ARG
Sbjct: 591 IVFCSTGMVTSLMYTLLREMKLNVREIHARKPQLHRTRVSDEFKESNRLILVTSDVSARG 650
Query: 492 IDVQQV 509
++ V
Sbjct: 651 MNYPDV 656
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 44.8 bits (101), Expect = 5e-05
Identities = 21/67 (31%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFM-RDPVRI 189
+ VLDEAD ML GF++ + + + Q+++ SAT P DV ++++ FM +P+++
Sbjct: 266 VSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKV 325
Query: 190 LVQKEEL 210
++ +L
Sbjct: 326 IIGSVDL 332
Score = 44.4 bits (100), Expect = 7e-05
Identities = 23/86 (26%), Positives = 44/86 (51%)
Frame = +3
Query: 252 REWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIM 431
R+ +L L + Y + ++F + + + L + R + ++HG+ Q ER +
Sbjct: 350 RDQRLIALLEKYHKSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSL 409
Query: 432 RQFRTGSSRVLITTDLLARGIDVQQV 509
F+ GS +L+ TD+ ARG+D+ V
Sbjct: 410 SLFKEGSCPLLVATDVAARGLDIPDV 435
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 44.0 bits (99), Expect = 9e-05
Identities = 19/59 (32%), Positives = 36/59 (61%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRI 189
+ + +LDEAD +L GF +I ++ ++ Q +L SATM ++V E+ + + P+R+
Sbjct: 314 LAVLILDEADRLLQTGFATEITELVRLCPKRRQTMLFSATMTEEVKELVKLSLNKPLRL 372
Score = 37.9 bits (84), Expect = 0.006
Identities = 21/77 (27%), Positives = 35/77 (45%)
Frame = +3
Query: 303 AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLL 482
++ +IF T++ L L + +HG++ Q +R + FR LI TD+
Sbjct: 413 SKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLIATDVA 472
Query: 483 ARGIDVQQVPASSTMIC 533
ARG+D+ V C
Sbjct: 473 ARGLDIIGVQTVINYAC 489
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Frame = +3
Query: 312 VIFCNTRRKVDW----LTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDL 479
V+F T VD+ L++ L+ + + HG MDQ+ R+ + F SS VL+ TD+
Sbjct: 269 VVFFMTCACVDYWGLVLSKIPTLKSISFFSTHGKMDQKGRDTALASFTEASSGVLLCTDV 328
Query: 480 LARGIDV 500
ARG+D+
Sbjct: 329 AARGLDI 335
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 192
+++ +LDEAD +L GF+ Q++ + L + L SAT V ++++ +R+ + ++
Sbjct: 168 LEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAKAGLRNAMEVI 227
Query: 193 --VQKEELTLEGIKQFYIAIELENGSWKL 273
+ + T G+ Y+ E + S +L
Sbjct: 228 SGAESKSKTSSGLYCEYLKCEADQKSSQL 256
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = +1
Query: 16 KLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDV 147
K VLDEAD +L GF+D++ +F+ L Q +L SATM ++
Sbjct: 205 KFLVLDEADRVLDVGFQDELRTIFQCLPKSRQTLLFSATMTSNL 248
Score = 37.1 bits (82), Expect = 0.011
Identities = 21/70 (30%), Positives = 36/70 (51%)
Frame = +3
Query: 300 IAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDL 479
I A+IF +T R L+ + + AMH Q R + +F++G +L+ TD+
Sbjct: 302 IRSAMIFVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMRLSALSKFKSGKVPILLATDV 361
Query: 480 LARGIDVQQV 509
+RG+D+ V
Sbjct: 362 ASRGLDIPTV 371
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/48 (37%), Positives = 29/48 (60%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEV 156
+K+ VLDEAD +L GF+ I + + Q L SAT+P++V ++
Sbjct: 538 VKVLVLDEADHLLDMGFRRDIERIIAAVPKQRQTFLFSATVPEEVRQI 585
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +3
Query: 306 QAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 485
+ +IFC T + + + V +H Q R + +FR + +L+T+D+ A
Sbjct: 642 KVIIFCTTAMVTRLVADLLSQLSLNVREIHSRKPQSYRTRVSDEFRKSKAIILVTSDVSA 701
Query: 486 RGIDVQQV 509
RG+D V
Sbjct: 702 RGVDYPDV 709
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Frame = +3
Query: 312 VIFCNTRRKVDW----LTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDL 479
V+F T VD+ +++ L+ + HG MDQ+ R+ + F SS VL+ TD+
Sbjct: 242 VVFFMTCACVDYWGLVISKIPSLKSISFFPTHGKMDQKGRDTALASFTEASSGVLLCTDV 301
Query: 480 LARGIDV 500
ARG+D+
Sbjct: 302 AARGLDI 308
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/56 (30%), Positives = 33/56 (58%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDP 180
+++ +LDEAD +L GF+ Q++ + L + L SAT V ++++ +R+P
Sbjct: 161 LEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAKAGLRNP 216
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMR---DPV 183
+K+ VLDEAD +L GF+ +I + + Q L SAT+ D+V ++ ++ + V
Sbjct: 236 VKVLVLDEADHLLDMGFRREIERIIAAVPKQRQTFLFSATVSDEVRQICHVALKRDHEFV 295
Query: 184 RILVQKEELTLEGIKQFYIAIELE 255
+ + T + + Q Y+ L+
Sbjct: 296 NCVQEGAGETHQKVSQMYMIASLD 319
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/68 (27%), Positives = 32/68 (47%)
Frame = +3
Query: 306 QAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 485
+ +IFC T + + + V +H Q R + +FR S +L+T+D+ A
Sbjct: 340 KVIIFCTTAMVTRLVADLLGKLSLNVREIHSRKPQSYRTRVSDEFRKSKSIILVTSDVSA 399
Query: 486 RGIDVQQV 509
RG+D V
Sbjct: 400 RGVDYPDV 407
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +3
Query: 390 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQV 509
+HG M+Q +R F+T VL++TD+ ARG+D +V
Sbjct: 379 LHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKV 418
>At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative
Length = 953
Score = 36.7 bits (81), Expect = 0.014
Identities = 15/52 (28%), Positives = 32/52 (61%)
Frame = +3
Query: 375 FTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVPASSTMI 530
+ +HG M ++E + +FR+G +++L++T ++ G+D VP +S M+
Sbjct: 797 YNCGLLHGRMKSDDKEEALNKFRSGETQILLSTQVIEIGVD---VPDASMMV 845
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 35.5 bits (78), Expect = 0.033
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Frame = +3
Query: 255 EWKLETLCDLYDTLSIAQA---VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREV 425
E KLE L + + S+A+ ++FCNT + + + HG++ +R
Sbjct: 353 EDKLEALLQVLEP-SLAKGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRVE 411
Query: 426 IMRQFRT--GSSRVLITTDLLARGIDV 500
+++F+ G L+ TDL ARG+D+
Sbjct: 412 NLKKFKDEEGDCPTLVCTDLAARGLDL 438
>At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative similar
to C-terminal half of transcription-repair coupling
factor (TRCF) GB:Q55750 [Synechocystis PCC6803];
contains Pfam profile: helicases conserved C-terminal
domain
Length = 823
Score = 35.5 bits (78), Expect = 0.033
Identities = 16/55 (29%), Positives = 31/55 (56%)
Frame = +3
Query: 339 VDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQ 503
+D+L E+ D ++ HG ++ E M +F G ++LI T+++ G+D+Q
Sbjct: 497 MDFLEEAFP--DIDIAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQ 549
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 35.1 bits (77), Expect = 0.044
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +3
Query: 390 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQ 506
+ GDM+ R + + R G +L++TD+ ARGID+ +
Sbjct: 371 LEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPE 409
>At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 315
Score = 35.1 bits (77), Expect = 0.044
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +3
Query: 390 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQ 506
+ GDM+ R + + R G +L++TD+ ARGID+ +
Sbjct: 214 LEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPE 252
>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein
helicase, putative
Length = 2172
Score = 34.7 bits (76), Expect = 0.058
Identities = 17/46 (36%), Positives = 30/46 (65%)
Frame = +3
Query: 393 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVPASSTMI 530
H + + +RE++ QFR G+ +VLI+T LA G++ +PA + +I
Sbjct: 811 HAGLTRTDREIVENQFRWGNLQVLISTATLAWGVN---LPAHTVII 853
>At1g60930.1 68414.m06858 DNA helicase, putative strong similarity
to DNA Helicase recQl4B [Arabidopsis thaliana]
GI:11121451; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00570: HRDC domain
Length = 1024
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/66 (22%), Positives = 31/66 (46%)
Frame = +3
Query: 312 VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 491
+I+C +R + +TE++ + + HG MD +R + +Q+ ++ T G
Sbjct: 630 IIYCLSRMDCEKVTEALRVFGHKAAFYHGSMDPGKRAFVQKQWSKDEINIICATVAFGMG 689
Query: 492 IDVQQV 509
I+ V
Sbjct: 690 INKPDV 695
>At4g37020.1 68417.m05244 expressed protein
Length = 212
Score = 33.1 bits (72), Expect = 0.18
Identities = 17/67 (25%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Frame = +3
Query: 255 EWKLETLCDLYDTLSIAQ---AVIFCNTRRKVDWLTESMHLRDF-TVSAMHGDMDQRERE 422
++K+ET+ +L L V+ C++R ++D + S+ + +++A++ D+ RER
Sbjct: 31 QFKMETVVELLGVLGRRPWLPIVVCCSSRDELDAVCSSLSTLPYISLAALYSDLADRERA 90
Query: 423 VIMRQFR 443
+++ +FR
Sbjct: 91 MVIEKFR 97
>At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly
identical to DNA Helicase [Arabidopsis thaliana]
GI:11121445
Length = 705
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/66 (21%), Positives = 31/66 (46%)
Frame = +3
Query: 312 VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 491
+++C +R++ + + + R + H DMD RE + ++ +V++ T G
Sbjct: 317 IVYCFSRKECEQIAGDLRERGISADYYHADMDANMREKVHMRWSKNKLQVIVGTVAFGMG 376
Query: 492 IDVQQV 509
I+ V
Sbjct: 377 INKPDV 382
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 32.3 bits (70), Expect = 0.31
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +3
Query: 306 QAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 485
+ ++F NT V+ + + + H + ER I+ FR + V + TD A
Sbjct: 426 RTMVFANTVEAVEAVADILEKASIQCYRYHKNHKLDERANILADFRE-TGGVFVCTDAAA 484
Query: 486 RGIDVQQV 509
RG+DV V
Sbjct: 485 RGVDVPNV 492
>At4g32700.1 68417.m04655 DNA-directed DNA polymerase family protein
similar to DNA helicase HEL308 [Homo sapiens]
GI:19110782; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00476: DNA polymerase family A
Length = 1548
Score = 30.7 bits (66), Expect = 0.95
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +3
Query: 381 VSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVPASSTMICHPTV 545
V+ H + ERE++ +R G RVL T LA G++ +PA + P +
Sbjct: 296 VAYHHAGLTVEEREIVETCYRKGLVRVLTATSTLAAGVN---LPARRVIFRQPMI 347
>At1g03950.1 68414.m00380 SNF7 family protein contains Pfam domain,
PF03357: SNF7 family
Length = 210
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/39 (30%), Positives = 28/39 (71%)
Frame = +3
Query: 381 VSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 497
++AM +MD ++ +MR+F+ S+++ +TT++++ ID
Sbjct: 109 MAAMSKNMDPAKQAKVMREFQKQSAQMDMTTEMMSDSID 147
>At5g01710.1 68418.m00088 expressed protein
Length = 513
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 342 DWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGS 452
DWL +S+ RDF V M D++ E ++I R +TG+
Sbjct: 426 DWLKKSVRERDFVVMKM--DVEGTEFDLIPRLIKTGA 460
>At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low
similarity to RNA helicase/RNAseIII CAF protein
[Arabidopsis thaliana] GI:6102610; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1324
Score = 29.1 bits (62), Expect = 2.9
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = +3
Query: 408 QREREVIMRQFRTGSSRVLITTDLLARGIDVQQV 509
Q+ ++ ++ +FR G V++ T + G+D+ +V
Sbjct: 513 QKIQQAVLEKFRAGGFNVIVATSIGEEGLDIMEV 546
>At3g06640.1 68416.m00772 protein kinase family protein contains
Serine/Threonine protein kinases active-site signature,
PROSITE:PS00108
Length = 763
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/83 (19%), Positives = 41/83 (49%)
Frame = +1
Query: 13 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 192
+KL E E + + F+ ++ + ++ +V + + + T+P + VS R + L
Sbjct: 472 VKLISKQEYSEEVIQSFRQEVSLMQRLRHPNVLLFMGAVTLPQGLCIVSEFLPRGSLFRL 531
Query: 193 VQKEELTLEGIKQFYIAIELENG 261
+Q+ L+ ++ +A+++ G
Sbjct: 532 LQRNMSKLDWRRRINMALDIARG 554
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/66 (21%), Positives = 28/66 (42%)
Frame = +3
Query: 312 VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 491
+I+C +R + ++E + + HG M+ +R I Q+ ++ T G
Sbjct: 677 IIYCLSRMDCEKVSERLQEFGHKAAFYHGSMEPEQRAFIQTQWSKDEINIICATVAFGMG 736
Query: 492 IDVQQV 509
I+ V
Sbjct: 737 INKPDV 742
>At1g05480.1 68414.m00557 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|Q9U7E0
Transcriptional regulator ATRX homolog {Caenorhabditis
elegans}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 588
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 414 EREVIMRQFRTGSSRVLITTDLLARG 491
ER+ I R +R G R++ T L+A+G
Sbjct: 485 ERQAISRAYRIGQKRIVYTYHLVAKG 510
>At5g42120.1 68418.m05128 lectin protein kinase family protein
contains Pfam domains PF00139: Legume lectins beta
domain and PF00069: Protein kinase domain
Length = 691
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -2
Query: 431 HDHFTLTLIHVSMHSRYSKVTQMHRFSEPIHLAT 330
H H++L + H+ + T HRFS P+ T
Sbjct: 3 HHHYSLVIFHLILFLSLDFPTLSHRFSPPLQNLT 36
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,036,285
Number of Sequences: 28952
Number of extensions: 303936
Number of successful extensions: 858
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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