Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0238
         (623 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   3.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.8  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   6.3  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   6.3  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   6.3  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    21   8.4  

>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 405 LHIIFLIWTITSTFGATIIVYTERE 479
           L  I+L W  TS    + ++YT R+
Sbjct: 19  LFFIYLYWQQTSNLTTSKLLYTYRQ 43


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 558 GTIVKCTVTKNVYP 517
           G  V+CTV+K  YP
Sbjct: 620 GVSVQCTVSKGDYP 633


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 571 KICNWHNSKVYRYKK 527
           ++ NW  +K  RYKK
Sbjct: 276 QVSNWFGNKRIRYKK 290


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +2

Query: 413 NIFNLDNNFNIWGHNNSVYRTGIFYSDKPI 502
           N+F+ +    +  H N +YR  I++  K +
Sbjct: 467 NVFSGELPVFLQEHRNGMYRPSIYFISKTL 496


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +2

Query: 413 NIFNLDNNFNIWGHNNSVYRTGIFYSDKPI 502
           N+F+ +    +  H N +YR  I++  K +
Sbjct: 467 NVFSGELPVFLQEHRNGMYRPSIYFISKTL 496


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +3

Query: 411 IIFLIWTITSTFGATII 461
           +IF++W I  TF    +
Sbjct: 249 VIFILWHIVGTFSGIFL 265


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,252
Number of Sequences: 336
Number of extensions: 3384
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)