Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0238
         (623 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06)                 28   5.4  
SB_32980| Best HMM Match : DEAD (HMM E-Value=0)                        28   7.1  

>SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06)
          Length = 863

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 271 KTASPKLRYQETCSINRRPESLKP 200
           +TA+PKLRY  T ++ + P  L P
Sbjct: 328 RTAAPKLRYARTATVPKLPSYLLP 351


>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 985

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 487 IKYSRSVYTIIVAPNVEVIVQIKNIIC 407
           I  S  +  II+ P  E+ VQ+K++IC
Sbjct: 76  ITESNCIQIIILTPTREIAVQVKDVIC 102


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,812,335
Number of Sequences: 59808
Number of extensions: 350118
Number of successful extensions: 600
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)