Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0238
         (623 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09220.1 68418.m01045 amino acid permease 2 (AAP2) identical ...    29   2.5  
At5g63850.1 68418.m08015 amino acid transporter 4, putative (AAP...    29   3.3  
At3g66658.2 68416.m00781 betaine-aldehyde dehydrogenase, putativ...    29   3.3  

>At5g09220.1 68418.m01045 amino acid permease 2 (AAP2) identical to
           amine acid permease AAP2 [Arabidopsis thaliana]
           GI:510236
          Length = 493

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 567 YVTGTIVKCTVTKNVYPYFNDIIGL 493
           Y +G +V  TV   + P+FND++G+
Sbjct: 399 YRSGFVVTTTVISMLMPFFNDVVGI 423


>At5g63850.1 68418.m08015 amino acid transporter 4, putative (AAP4)
           identical to amino acid transporter GI:608671 from
           [Arabidopsis thaliana];
          Length = 466

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 567 YVTGTIVKCTVTKNVYPYFNDIIGL 493
           Y +G +V  TV   + P+FND++G+
Sbjct: 372 YRSGFVVLTTVISMLMPFFNDVVGI 396


>At3g66658.2 68416.m00781 betaine-aldehyde dehydrogenase, putative
           similar to betaine-aldehyde dehydrogenase, chloroplast
           precursor (BADH) [Spinacia oleracea] SWISS-PROT:P17202;
           contains non-consensus splice site (GC) at intron 13
          Length = 596

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -3

Query: 552 IVKCTVTKNV-YPYFNDIIGLSE*NIPVLYTLLLWPQMLKLLSKLKILYVDFSNLLR 385
           ++K  + K + YP   +     E  +  LY L +W ++  L+  LK L    SN+ R
Sbjct: 535 LIKTKIPKPIQYPVAENAFEFQEALVETLYGLNIWDRLRSLIDVLKFLTDQSSNVSR 591


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,711,695
Number of Sequences: 28952
Number of extensions: 250936
Number of successful extensions: 381
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)