Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0237
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    28   1.0  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   4.1  
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.4  

>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 366 PHPSNRNALLLHGRNGQGDSTYP 434
           PHP N   +LL G N Q D + P
Sbjct: 97  PHPENSKIVLLMGSNAQNDPSSP 119


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
 Frame = -2

Query: 636 PSRYMEGYPCNGFSYINKNSMIATPRSSLARS-----SNNFLVTLLLSKAPPLKI 487
           P R    +   G + + K + + +P+ SL+ +     S   L T +LSK+PPLK+
Sbjct: 172 PKRRKNLFEKYGKTDLGKPARVPSPKKSLSSTIKSPPSRVKLPTSILSKSPPLKV 226


>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 350

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 648 PQTQPSRYMEGYPCNGFSYINKNSMIATPRSSLARS 541
           P T+PS  M   P    S   K++ ++TP S+ +RS
Sbjct: 254 PSTKPSNEMPISPLLSSSVFFKDTEMSTPNSNHSRS 289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,704,787
Number of Sequences: 5004
Number of extensions: 53375
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)