Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0237
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13202| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_193| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   7.5  
SB_15435| Best HMM Match : Fic (HMM E-Value=7.5)                       28   7.5  
SB_11950| Best HMM Match : Pentaxin (HMM E-Value=0.12)                 28   7.5  

>SB_13202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +1

Query: 19  YYEP*SCSYVDAKKYSKISLHFTASLDFWRRTSH*VP--EYFVITITVYFHMVLE 177
           Y+   S SYV+   ++K+   ++ ++  W R  H  P   YF  T  V+  +V++
Sbjct: 65  YFSGTSSSYVEIPYHAKVDTRYSLTVLLWIRPEHIGPIFNYFRSTFGVHLWLVVQ 119


>SB_193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1816

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 301 QRKCATHLEI*VLGSQYSYNGCPTLQTETHYCFT 402
           QR CA  L+  VLG++ SY+ C   +   H C T
Sbjct: 236 QRHCALQLK--VLGNKISYDNCVCNKIWRHVCVT 267


>SB_15435| Best HMM Match : Fic (HMM E-Value=7.5)
          Length = 695

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -1

Query: 373 GWGSRCNYTETLELISQGGWRIYVVDVYGLQ*PLNTRWDVARPP 242
           GW +   YT  ++L    GWR   +  Y +Q      W ++RPP
Sbjct: 459 GWRTDRLYTYLIQLSEWEGWRTDRLYTYLIQLSEWEGWRISRPP 502


>SB_11950| Best HMM Match : Pentaxin (HMM E-Value=0.12)
          Length = 494

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 301 QRKCATHLEI*VLGSQYSYNGCPTLQTETHYCFT 402
           QR CA  L+  VLG++ SY+ C   +   H C T
Sbjct: 250 QRHCALQLK--VLGNKISYDNCVCNKIWRHVCVT 281


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,371,516
Number of Sequences: 59808
Number of extensions: 402998
Number of successful extensions: 672
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)