Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0237
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   2.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   7.8  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 1   GNHLTPYYEP*SCSYVDAKKYSKISLHFTASLD 99
           G HL  + +P S S +  +    + +HFTAS D
Sbjct: 221 GRHLG-FLKPDSSSELATRLAEAVRIHFTASRD 252


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 476 RSPSILSGGALDSKSVTRKLFDDLAKLDLGVAIMEFLLMYEN 601
           +S   L+GG  D  +V R++  D + +D+   I      Y+N
Sbjct: 459 KSALSLAGGLYDEGTVRRRVAVDRSGIDINEEIQRNREFYKN 500


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 435 TGRYYHPAHFCREAVMRFGLKGGAAVVTILRP 340
           +G Y  PAH    +  R+ L   A V T + P
Sbjct: 438 SGEYEIPAHGLPPSATRYDLGAVATVGTTVAP 469


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,571
Number of Sequences: 438
Number of extensions: 3969
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)