Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0237
         (649 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18570.1 68418.m02195 GTP1/OBG family protein similar to SP|P...    30   1.2  
At4g25434.1 68417.m03661 MutT/nudix family protein similar to SP...    28   4.7  
At3g25670.1 68416.m03195 leucine-rich repeat family protein cont...    27   8.1  
At1g61000.1 68414.m06868 Nuf2 family protein contains Pfam PF038...    27   8.1  
At1g13230.1 68414.m01535 leucine-rich repeat family protein cont...    27   8.1  

>At5g18570.1 68418.m02195 GTP1/OBG family protein similar to
           SP|P20964 Spo0B-associated GTP-binding protein {Bacillus
           subtilis}; contains Pfam profile PF01018: GTP1/OBG
           family
          Length = 681

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 354 LQRLPHPSNRNALLLHGRNGQGDSTYPCGLTRGP 455
           L  L HP  R  LL  GR G+G++++  G+ + P
Sbjct: 324 LLELLHPGQRALLLPGGRGGRGNASFKSGMNKVP 357


>At4g25434.1 68417.m03661 MutT/nudix family protein similar to
           SP|P53370 Nucleoside diphosphate-linked moiety X motif 6
           {Homo sapiens}; contains Pfam profile PF00293: NUDIX
           domain
          Length = 304

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -3

Query: 521 HFCYPRRHHLKYWVTSCESTVGRTSCESARVGTITL 414
           H   P    L YW+   EST+   +    RVG + L
Sbjct: 85  HHAEPTYLMLVYWIPEAESTIPLNASHRVRVGAVVL 120


>At3g25670.1 68416.m03195 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; +
          Length = 475

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 642 TQPSRYMEGYPCNGFSYINKNSMIATPRSS 553
           T PS+ +E  PC G  YIN N++    R S
Sbjct: 348 TVPSKELETLPCLGALYINGNNLSGELRFS 377


>At1g61000.1 68414.m06868 Nuf2 family protein contains Pfam PF03800:
           Nuf2 family domain; similar to Myosin-like protein NUF2
           (Nuclear filament-containing protein 2) (Nuclear
           division protein nuf2) (Swiss-Prot:Q10173)
           [Schizosaccharomyces pombe]
          Length = 974

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +2

Query: 182 LV*FNIFIDVLFFVFFYCLDGWTSYIPPGVKWLLEPIDIYNVNAPPTLRY 331
           LV   I I +LFF+F +  D   +++   + WL E   + +V  P ++++
Sbjct: 722 LVFVPIMIGILFFLFEFYDDQLLAFMVLVLVWLCELFTLISVRTPISMKF 771


>At1g13230.1 68414.m01535 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to gb|U42445
           Cf-2.2 from Lycopersicon pimpinellifolium
          Length = 424

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 636 PSRYMEGYPCNGFSYINKNSMIATPRSS 553
           PS+ +E  PC G  YIN N++    R S
Sbjct: 354 PSKKLEALPCLGALYINGNNLTGELRFS 381


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,141,737
Number of Sequences: 28952
Number of extensions: 286952
Number of successful extensions: 581
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)