Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0236
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0404 + 3200787-3200898,3201016-3201091,3201442-3201544,320...    28   7.4  
07_03_1707 + 28866054-28866065,28866185-28866269,28866398-28867149     27   9.8  

>12_01_0404 +
           3200787-3200898,3201016-3201091,3201442-3201544,
           3202109-3202160,3202239-3202333,3202703-3202768,
           3202910-3203419,3203598-3203756,3204022-3204321,
           3204867-3205193,3205548-3205754,3205978-3206076,
           3206193-3206251,3206294-3206639
          Length = 836

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
 Frame = -3

Query: 546 YAMLIIKKSTDKFKIINIGYSNSNKTWRX*T*SLPRRLR*DIFFLNKIIALQYNA-LFTK 370
           +A+L I    +K KI+N+    S K W+     +   L+  +  L+++   Q  A + T+
Sbjct: 262 HALLEISDDVNKGKIMNL---RSAKKWKTIEPLVKSYLQNSLDLLSQLTDNQILAFVLTR 318

Query: 369 LRNVYILFNIAVITMYKTCKHINSTYYVTSKCITGLI 259
           LR   +LF+    T  +  KH+   Y V  +   G I
Sbjct: 319 LRASAVLFSAYPSTSRRLLKHLFDCYAVEMRRNDGSI 355


>07_03_1707 + 28866054-28866065,28866185-28866269,28866398-28867149
          Length = 282

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 534 IIKKSTDKFKIINIGYSNSN 475
           ++ K  DK KIINI Y NSN
Sbjct: 27  VLNKLKDKEKIINIVYENSN 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,695,075
Number of Sequences: 37544
Number of extensions: 261597
Number of successful extensions: 345
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)