Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0236
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93397-5|CAD89745.1|  375|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z78410-11|CAB01639.2|  315|Caenorhabditis elegans Hypothetical p...    29   2.9  

>Z93397-5|CAD89745.1|  375|Caenorhabditis elegans Hypothetical
           protein ZC482.8 protein.
          Length = 375

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = -2

Query: 160 HVFLFYFF*NLIVRHRHKVPNKSLNIFWVQAA*IVQFSILFLNIIHVYIIAR 5
           H+++F FF NL   H+H      L     Q   I  FS  FLN++H+ I+ R
Sbjct: 24  HIYMF-FFENL---HKHFELVTVLTDVTKQLYDIASFSGFFLNLVHLVILTR 71


>Z78410-11|CAB01639.2|  315|Caenorhabditis elegans Hypothetical
           protein C51E3.4 protein.
          Length = 315

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 457 LXSPCFIRIRITNIDDFKFICALFNYQHCI-LFNN 558
           L SPC I I +T I D   +CA F Y  C+ LF N
Sbjct: 40  LRSPCHILISLTCICDLLHLCAQFVY--CVHLFGN 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,504,546
Number of Sequences: 27780
Number of extensions: 304049
Number of successful extensions: 570
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)