Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0236
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   2.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.4  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   5.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   5.9  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   7.8  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 302 FICLHVLYIVMTAILKSIYTFLNFVN 379
           F+C+ ++YI+M  I      + NF++
Sbjct: 402 FLCISLVYIIMLIIFIPRNIYENFIS 427


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = -3

Query: 405 IIALQYNALFTKLRNVYILFNIAVITMYKTCKHINSTYYVT 283
           +IA  Y  +   +  VY +    +   +   KHI  T Y T
Sbjct: 817 MIAFAYPIMLIVVCTVYAVLTRKIPEAFNESKHIGFTMYTT 857


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = -3

Query: 390 YNALFTKLRNVYILFNIAVITMYKTCKHINSTYYVTSKCITGL 262
           YNAL   +  VY +    +   +   K I  T Y T  CI  L
Sbjct: 680 YNALLILISTVYAVKTRKIPENFNESKFIGFTMYTT--CIIWL 720


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = -3

Query: 390 YNALFTKLRNVYILFNIAVITMYKTCKHINSTYYVTSKCITGL 262
           YNAL   +  VY +    +   +   K I  T Y T  CI  L
Sbjct: 770 YNALLILISTVYAVKTRKIPENFNESKFIGFTMYTT--CIIWL 810


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 209 LNLDMFFF*NGLLNI 253
           +N D FFF  G+ N+
Sbjct: 10  INFDRFFFIEGMTNV 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,536
Number of Sequences: 438
Number of extensions: 3950
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)