Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0234
         (692 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7QY33 Cluster: Chromosome undetermined scaffold_237, w...    34   2.9  
UniRef50_Q7R9C6 Cluster: Putative uncharacterized protein PY0693...    34   2.9  

>UniRef50_A7QY33 Cluster: Chromosome undetermined scaffold_237,
           whole genome shotgun sequence; n=2; Vitis vinifera|Rep:
           Chromosome undetermined scaffold_237, whole genome
           shotgun sequence - Vitis vinifera (Grape)
          Length = 238

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -1

Query: 563 SIEIGWRDIELLSYSSCIFAHVLNANLRLIRFSHGYHYENWT 438
           SI    + + LL   SC+    LN NL L  F + YH +N+T
Sbjct: 80  SISYDMKKLNLLDPKSCVHEVFLNLNLSLTPFQYYYHVKNYT 121


>UniRef50_Q7R9C6 Cluster: Putative uncharacterized protein PY06936;
           n=1; Plasmodium yoelii yoelii|Rep: Putative
           uncharacterized protein PY06936 - Plasmodium yoelii
           yoelii
          Length = 496

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -3

Query: 117 YYNFFCN*FVIVVYRINSLRKNKYIYIVFTMAKKKKKN 4
           +YN   N F+     +N+L+ NKYI+ ++   K+KK N
Sbjct: 313 FYNNINNIFISYEKELNNLQPNKYIFTIYDNIKEKKSN 350


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 570,194,514
Number of Sequences: 1657284
Number of extensions: 10192310
Number of successful extensions: 23481
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23471
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)