Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0234
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64604-2|AAF98624.2| 1093|Caenorhabditis elegans Receptor mediat...    29   3.2  
AY750054-1|AAW73253.1| 1093|Caenorhabditis elegans receptor-medi...    29   3.2  
Z83218-3|CAB05688.1|  330|Caenorhabditis elegans Hypothetical pr...    28   7.3  

>U64604-2|AAF98624.2| 1093|Caenorhabditis elegans Receptor mediated
           endocytosis protein6, isoform a protein.
          Length = 1093

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 478 LYDFLMDTIMRTGLNRKGSHGKRQ 407
           L DFLM T + TG N K + GK Q
Sbjct: 854 LVDFLMRTFLETGFNNKHTVGKTQ 877


>AY750054-1|AAW73253.1| 1093|Caenorhabditis elegans
           receptor-mediated endocytosis 6 protein.
          Length = 1093

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 478 LYDFLMDTIMRTGLNRKGSHGKRQ 407
           L DFLM T + TG N K + GK Q
Sbjct: 854 LVDFLMRTFLETGFNNKHTVGKTQ 877


>Z83218-3|CAB05688.1|  330|Caenorhabditis elegans Hypothetical
           protein C31A11.6 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +2

Query: 185 FFYNNMLLYYCYSQSILCKSQYFRIIEMKSTLGFLT 292
           FFY+ ++L  C++  ++ +  Y  +  + STL FLT
Sbjct: 129 FFYSFLILILCFTLLLIPRLSYCPVNFLASTLVFLT 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,671,177
Number of Sequences: 27780
Number of extensions: 257704
Number of successful extensions: 604
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)