Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0234
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   3.6  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   4.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.4  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   8.4  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 55  FSQTINSINYNHELITKKI 111
           F QT+N +N+N   + K +
Sbjct: 49  FEQTLNELNFNLNYVNKGV 67


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 34  NYIYIFIFSQTINSINYNHELITKKIII 117
           NY Y +      N+ NYN +L  K  II
Sbjct: 95  NYKYNYNNKYNYNNNNYNKKLYYKNYII 122


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 656 IYQLMVPCMQK 688
           IYQLM+ C QK
Sbjct: 867 IYQLMLDCWQK 877


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 402 LIKKESSKSIHPVKSYEVTNIKNN 331
           +I   S+K+IH   +Y   N  NN
Sbjct: 314 IISSLSNKTIHNNNNYNNNNYNNN 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,859
Number of Sequences: 438
Number of extensions: 3265
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)