Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0233
(489 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P77309 Cluster: Uncharacterized HTH-type transcriptiona... 180 1e-44
UniRef50_Q4KGD9 Cluster: Transcriptional regulator, LysR family;... 84 1e-15
UniRef50_Q6D3N1 Cluster: LysR-family transcriptional regulator; ... 78 9e-14
UniRef50_Q89K25 Cluster: Transcriptional regulatory protein; n=4... 64 2e-09
UniRef50_P94501 Cluster: HTH-type transcriptional regulator gltR... 64 2e-09
UniRef50_A4TZY7 Cluster: Transcriptional regulator, LysR family;... 62 6e-09
UniRef50_Q8Y2W8 Cluster: Probable transcription regulator protei... 60 2e-08
UniRef50_Q1K251 Cluster: Transcriptional regulator, LysR family;... 60 3e-08
UniRef50_Q44311 Cluster: HTH-type transcriptional regulator soxR... 58 1e-07
UniRef50_Q4IUI3 Cluster: Regulatory protein, LysR:LysR substrate... 56 3e-07
UniRef50_A7DGR6 Cluster: Transcriptional regulator, LysR family;... 56 3e-07
UniRef50_Q483X8 Cluster: Transcriptional regulator, LysR family;... 56 4e-07
UniRef50_Q02SS1 Cluster: Putative transcriptional regulator, Lys... 56 4e-07
UniRef50_UPI000159799F Cluster: YofA; n=1; Bacillus amyloliquefa... 56 6e-07
UniRef50_Q2RTU3 Cluster: Transcriptional Regulator, LysR family ... 56 6e-07
UniRef50_Q1N570 Cluster: Putative transcriptional regulator LYSR... 55 1e-06
UniRef50_A6SYE6 Cluster: Transcriptional regulator, LysR family;... 55 1e-06
UniRef50_Q7P201 Cluster: Probable transcriptional regulator, Lys... 54 1e-06
UniRef50_A0FRJ0 Cluster: Transcriptional regulator, LysR family;... 54 2e-06
UniRef50_Q5WCE2 Cluster: LysR family transcriptional regulator; ... 53 3e-06
UniRef50_A0HF39 Cluster: Transcriptional regulator, LysR family;... 53 4e-06
UniRef50_Q62KZ2 Cluster: Transcriptional regulator, LysR family;... 52 5e-06
UniRef50_Q3A8F8 Cluster: Putative transcriptional regulator LysR... 52 7e-06
UniRef50_A1TIU1 Cluster: Transcriptional regulator, LysR family;... 52 7e-06
UniRef50_A3M7J7 Cluster: Transcriptional regulator LysR family; ... 51 2e-05
UniRef50_Q5LKQ5 Cluster: Transcriptional regulator, LysR family;... 50 3e-05
UniRef50_O32186 Cluster: Uncharacterized HTH-type transcriptiona... 50 3e-05
UniRef50_Q5FQ95 Cluster: Transcriptional regulator; n=1; Glucono... 49 5e-05
UniRef50_Q3F171 Cluster: Transcriptional regulators, LysR family... 48 1e-04
UniRef50_Q6ARK3 Cluster: Probable transcriptional regulator; n=1... 47 2e-04
UniRef50_O34685 Cluster: Uncharacterized HTH-type transcriptiona... 47 2e-04
UniRef50_Q6F7L3 Cluster: Putative transcriptional regulator; n=2... 46 3e-04
UniRef50_Q11K77 Cluster: Transcriptional regulator, LysR family;... 46 5e-04
UniRef50_Q81YI9 Cluster: Transcriptional regulator, LysR family;... 45 8e-04
UniRef50_Q11E30 Cluster: Transcriptional regulator, LysR family;... 45 0.001
UniRef50_Q0SIJ4 Cluster: Probable transcriptional regulator, Lys... 45 0.001
UniRef50_Q4KFG8 Cluster: Transcriptional regulator, LysR family;... 44 0.001
UniRef50_A0NXC4 Cluster: Transcriptional regulator; n=1; Stappia... 44 0.001
UniRef50_Q46QV9 Cluster: Regulatory protein, LysR:LysR, substrat... 44 0.002
UniRef50_Q2BLJ9 Cluster: Regulatory protein, LysR:LysR, substrat... 44 0.002
UniRef50_A6T911 Cluster: Putative transcriptional regulator; n=1... 44 0.002
UniRef50_A5NZG7 Cluster: Transcriptional regulator, LysR family;... 44 0.002
UniRef50_A4J4H0 Cluster: Transcriptional regulator, LysR family;... 44 0.002
UniRef50_A3RQS4 Cluster: Transcriptional regulators, LysR family... 44 0.002
UniRef50_Q65NT8 Cluster: YtlI; n=1; Bacillus licheniformis ATCC ... 43 0.004
UniRef50_Q9I5M0 Cluster: Probable transcriptional regulator; n=5... 42 0.006
UniRef50_A6DK62 Cluster: Hydrogen peroxide-inducible genes activ... 42 0.006
UniRef50_A5NYP7 Cluster: Transcriptional regulator, LysR family;... 42 0.010
UniRef50_Q8GEJ2 Cluster: Putative uncharacterized protein; n=1; ... 41 0.017
UniRef50_Q0KDZ3 Cluster: Transcriptional regulator, LysR-family;... 41 0.017
UniRef50_Q01RY1 Cluster: Transcriptional regulator, LysR family;... 41 0.017
UniRef50_Q1IQA4 Cluster: Transcriptional regulator, LysR family;... 40 0.022
UniRef50_A7B645 Cluster: Putative uncharacterized protein; n=1; ... 40 0.022
UniRef50_Q1WRA3 Cluster: Transcriptional regulators, LysR family... 40 0.030
UniRef50_P0ACR6 Cluster: Uncharacterized HTH-type transcriptiona... 40 0.030
UniRef50_A6TLX8 Cluster: Transcriptional regulator, LysR family;... 40 0.039
UniRef50_A5UU78 Cluster: Transcriptional regulator, LysR family;... 40 0.039
UniRef50_A5GAJ4 Cluster: Transcriptional regulator, LysR family;... 40 0.039
UniRef50_Q7WNR8 Cluster: LysR-family transcriptional regulator; ... 39 0.052
UniRef50_A4FND6 Cluster: LysR-family transcriptional regulator; ... 39 0.052
UniRef50_UPI00004DBFCC Cluster: UPI00004DBFCC related cluster; n... 39 0.069
UniRef50_Q3ABX5 Cluster: Transcriptional regulator, LysR family;... 39 0.069
UniRef50_Q2BJ50 Cluster: Regulatory protein, LysR:LysR, substrat... 39 0.069
UniRef50_Q4LAH2 Cluster: Similar to LysR-gltR family transcripti... 38 0.091
UniRef50_Q9X5P2 Cluster: Probable hydrogen peroxide-inducible ge... 38 0.091
UniRef50_Q6A6A6 Cluster: Oxidative stress transcriptional regula... 38 0.12
UniRef50_A6E9M2 Cluster: Putative uncharacterized protein; n=1; ... 38 0.12
UniRef50_A4YNR9 Cluster: Transcriptional regulator of oxidative ... 38 0.16
UniRef50_Q81QI6 Cluster: Transcriptional regulator, LysR family;... 37 0.21
UniRef50_Q1DBZ6 Cluster: Transcriptional regulator, LysR family;... 37 0.21
UniRef50_A1WJ01 Cluster: Transcriptional regulator, LysR family;... 37 0.21
UniRef50_Q7NKC0 Cluster: Nitrogen assimilation transcriptional a... 37 0.28
UniRef50_Q6F9I5 Cluster: Putative transcriptional regulator; n=2... 37 0.28
UniRef50_A6M050 Cluster: Transcriptional regulator, LysR family;... 37 0.28
UniRef50_A1B7J2 Cluster: Transcriptional regulator, LysR family;... 37 0.28
UniRef50_Q5YWC3 Cluster: Putative transcriptional regulator; n=1... 36 0.37
UniRef50_Q47D52 Cluster: Regulatory protein, LysR:LysR, substrat... 36 0.37
UniRef50_Q28M96 Cluster: Transcriptional regulator LysR family; ... 36 0.37
UniRef50_Q1ATU8 Cluster: Transcriptional regulator, LysR family;... 36 0.48
UniRef50_A6BIN0 Cluster: Putative uncharacterized protein; n=1; ... 36 0.48
UniRef50_A0KEM0 Cluster: Transcriptional regulator IlvY; n=2; Ae... 36 0.48
UniRef50_Q3W6A3 Cluster: Regulatory protein, LysR:LysR substrate... 36 0.64
UniRef50_Q0BXT0 Cluster: Putative oxidative stress regulatory pr... 36 0.64
UniRef50_A6SYC1 Cluster: Transcriptional regulator, LysR family;... 36 0.64
UniRef50_Q9PD47 Cluster: Oxidative stress transcriptional regula... 35 0.84
UniRef50_Q18AT1 Cluster: LysR-family transcriptional regulator; ... 35 0.84
UniRef50_A1W2B2 Cluster: Transcriptional regulator, LysR family;... 35 0.84
UniRef50_P52659 Cluster: HTH-type transcriptional regulator araB... 35 0.84
UniRef50_Q1QWJ6 Cluster: Transcriptional regulator, LysR family;... 35 1.1
UniRef50_Q1DAH1 Cluster: Transcriptional activator, LysR family;... 35 1.1
UniRef50_Q1AYT0 Cluster: Transcriptional regulator, LysR family;... 35 1.1
UniRef50_A7IF06 Cluster: Transcriptional regulator, LysR family;... 35 1.1
UniRef50_A3RXQ5 Cluster: Transcriptional regulators, LysR family... 35 1.1
UniRef50_A1W2B9 Cluster: Transcriptional regulator, LysR family;... 35 1.1
UniRef50_A1SY80 Cluster: Transcriptional regulator, substrate-bi... 35 1.1
UniRef50_A0VW09 Cluster: Transcriptional regulator, LysR family;... 35 1.1
UniRef50_O87883 Cluster: Probable hydrogen peroxide-inducible ge... 35 1.1
UniRef50_Q7VS13 Cluster: LysR-family transcriptional regulator; ... 34 1.5
UniRef50_Q67L57 Cluster: LysR-family transcriptional regulator; ... 34 1.5
UniRef50_Q39MQ8 Cluster: Transcriptional regulator, LysR family;... 34 1.5
UniRef50_Q0SIM9 Cluster: Probable transcriptional regulator, Lys... 34 1.5
UniRef50_Q0SEE3 Cluster: Transcriptional regulator, LysR family ... 34 1.5
UniRef50_Q0S1L3 Cluster: Possible transcriptional regulator, Lys... 34 1.5
UniRef50_A6WET0 Cluster: Transcriptional regulator, LysR family;... 34 1.5
UniRef50_A5CNV0 Cluster: Putative uncharacterized protein; n=3; ... 34 1.5
UniRef50_A4JSC2 Cluster: Transcriptional regulator, LysR family;... 34 1.5
UniRef50_A0JQZ0 Cluster: Transcriptional regulator, LysR family;... 34 1.5
UniRef50_UPI0000DAE53B Cluster: hypothetical protein Rgryl_01000... 34 2.0
UniRef50_UPI0000D5689E Cluster: PREDICTED: similar to CG17142-PA... 34 2.0
UniRef50_Q3JDU2 Cluster: NADH dehydrogenase; n=2; Proteobacteria... 34 2.0
UniRef50_A6P2N5 Cluster: Putative uncharacterized protein; n=1; ... 34 2.0
UniRef50_P67667 Cluster: Uncharacterized HTH-type transcriptiona... 34 2.0
UniRef50_P52677 Cluster: Probable hydrogen peroxide-inducible ge... 34 2.0
UniRef50_Q46P94 Cluster: Regulatory protein, LysR:LysR, substrat... 33 2.6
UniRef50_Q1FKI4 Cluster: Regulatory protein, LysR:LysR, substrat... 33 2.6
UniRef50_Q13PB2 Cluster: Transcriptional regulator, LysR family;... 33 2.6
UniRef50_A4J6T9 Cluster: Transcriptional regulator, LysR family;... 33 2.6
UniRef50_A3JY71 Cluster: Transcriptional regulator, LysR family ... 33 2.6
UniRef50_A1SL15 Cluster: Putative uncharacterized protein; n=1; ... 33 2.6
UniRef50_Q7NSP2 Cluster: Hydrogen peroxide-inducible genes activ... 33 3.4
UniRef50_Q46S95 Cluster: Regulatory protein, LysR:LysR, substrat... 33 3.4
UniRef50_Q2RHB2 Cluster: Transcriptional regulator, LysR family;... 33 3.4
UniRef50_Q28P74 Cluster: Transcriptional regulator LysR family; ... 33 3.4
UniRef50_Q0LX02 Cluster: Regulatory protein, LysR:LysR, substrat... 33 3.4
UniRef50_A7MZ35 Cluster: Putative uncharacterized protein; n=1; ... 33 3.4
UniRef50_A6UMN5 Cluster: Transcriptional regulator, LysR family;... 33 3.4
UniRef50_A6Q1C4 Cluster: Transcriptional regulator, LysR family;... 33 3.4
UniRef50_A6C0K1 Cluster: Probable transcription regulator; n=1; ... 33 3.4
UniRef50_A4C1K9 Cluster: Transcriptional regulator, LysR family ... 33 3.4
UniRef50_A0Y4L8 Cluster: DNA-binding transcriptional dual regula... 33 3.4
UniRef50_O06703 Cluster: HTH-type transcriptional regulator bbuR... 33 3.4
UniRef50_Q6D6S9 Cluster: LysR-family transcriptional regulator; ... 33 4.5
UniRef50_Q3W213 Cluster: Regulatory protein, LysR:LysR substrate... 33 4.5
UniRef50_Q1YQ35 Cluster: Transcriptional regulator, LysR family ... 33 4.5
UniRef50_Q0K190 Cluster: Transcriptional regulator, LysR-family;... 33 4.5
UniRef50_A5G0H6 Cluster: Transcriptional regulator, LysR family;... 33 4.5
UniRef50_A4LYP8 Cluster: Transcriptional regulator, LysR family;... 33 4.5
UniRef50_A3YFM1 Cluster: Transcriptional regulator MetR; n=1; Ma... 33 4.5
UniRef50_A3M8B6 Cluster: Transcriptional regulators LysR family;... 33 4.5
UniRef50_A3K7Z5 Cluster: Regulatory protein, LysR:LysR, substrat... 33 4.5
UniRef50_Q4KF30 Cluster: Transcriptional regulator, LysR family;... 32 6.0
UniRef50_Q8KSM0 Cluster: OxyR; n=5; Neisseria|Rep: OxyR - Neisse... 32 6.0
UniRef50_Q04GQ1 Cluster: Transcriptional regulator; n=2; Lactoba... 32 6.0
UniRef50_Q01UV5 Cluster: LOR/SDH bifunctional enzyme conserved d... 32 6.0
UniRef50_A3TJH8 Cluster: Putative transcriptional regulator; n=1... 32 6.0
UniRef50_A1W235 Cluster: Transcriptional regulator, LysR family;... 32 6.0
UniRef50_Q9AUD2 Cluster: 11S globulin; n=6; Magnoliophyta|Rep: 1... 32 6.0
UniRef50_Q9WZU5 Cluster: S-layer-like array protein; n=2; Thermo... 32 7.9
UniRef50_Q9KEL3 Cluster: Transcriptional regulator; n=1; Bacillu... 32 7.9
UniRef50_Q7WNK0 Cluster: LysR-family transcriptional regulator; ... 32 7.9
UniRef50_Q5YV73 Cluster: Putative transcriptional regulator; n=1... 32 7.9
UniRef50_Q47P44 Cluster: Putative LysR-family transcriptional re... 32 7.9
UniRef50_Q2SD63 Cluster: Transcriptional regulator; n=2; Oceanos... 32 7.9
UniRef50_Q2RLB0 Cluster: Transcriptional regulator, LysR family;... 32 7.9
UniRef50_Q8GRA2 Cluster: Collagen binding protein; n=8; Streptoc... 32 7.9
UniRef50_Q1EY43 Cluster: Regulatory protein, LysR:LysR, substrat... 32 7.9
UniRef50_Q12CN1 Cluster: Transcriptional regulator, LysR family;... 32 7.9
UniRef50_A6SW66 Cluster: Transcriptional regulator, LysR family;... 32 7.9
UniRef50_A6E260 Cluster: Transcriptional regulator, LysR family ... 32 7.9
UniRef50_A4A328 Cluster: Transcriptional regulator, lysr family ... 32 7.9
UniRef50_A3UQR4 Cluster: Transcriptional regulator, LysR family;... 32 7.9
UniRef50_A3SLJ6 Cluster: Transcriptional regulator, LysR family ... 32 7.9
UniRef50_A1B2F6 Cluster: Transcriptional regulator, LysR family;... 32 7.9
>UniRef50_P77309 Cluster: Uncharacterized HTH-type transcriptional
regulator yneJ; n=24; Enterobacteriaceae|Rep:
Uncharacterized HTH-type transcriptional regulator yneJ
- Escherichia coli (strain K12)
Length = 293
Score = 180 bits (439), Expect = 1e-44
Identities = 84/84 (100%), Positives = 84/84 (100%)
Frame = +2
Query: 2 NRRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGY 181
NRRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGY
Sbjct: 112 NRRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGY 171
Query: 182 APVTRASQVNGSNIYAFRANCSYR 253
APVTRASQVNGSNIYAFRANCSYR
Sbjct: 172 APVTRASQVNGSNIYAFRANCSYR 195
Score = 144 bits (350), Expect = 7e-34
Identities = 66/78 (84%), Positives = 66/78 (84%)
Frame = +1
Query: 256 HFESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLESMPGHHQVEAWPLAEQ 435
HFESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLESMPGHHQVEAWPLAEQ
Sbjct: 197 HFESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLESMPGHHQVEAWPLAEQ 256
Query: 436 XXXXXXXXXXXXGAKTRP 489
GAKTRP
Sbjct: 257 WRWLTTWLVWRRGAKTRP 274
>UniRef50_Q4KGD9 Cluster: Transcriptional regulator, LysR family;
n=8; Gammaproteobacteria|Rep: Transcriptional regulator,
LysR family - Pseudomonas fluorescens (strain Pf-5 /
ATCC BAA-477)
Length = 297
Score = 84.2 bits (199), Expect = 1e-15
Identities = 33/84 (39%), Positives = 54/84 (64%)
Frame = +2
Query: 2 NRRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGY 181
+R YP + + +GPSG +L+G+L G+L+AA +DGP+ +DG+P+ E L++++ +
Sbjct: 112 HRAYPAVNLQVQSGPSGELLEGLLTGRLDAALVDGPLELAGLDGVPLCDETLVLISEADH 171
Query: 182 APVTRASQVNGSNIYAFRANCSYR 253
PV A V G ++ FR CSYR
Sbjct: 172 PPVRTARDVEGRAVFTFRQGCSYR 195
Score = 68.1 bits (159), Expect = 1e-10
Identities = 33/57 (57%), Positives = 40/57 (70%)
Frame = +1
Query: 262 ESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLESMPGHHQVEAWPLAE 432
ESWF AA G E+ESY GMLACVIAG+G+AL+ +SML+S+PG V LAE
Sbjct: 199 ESWFAHYHAAMGRAMEIESYQGMLACVIAGSGVALMAQSMLDSLPGRESVAVHALAE 255
>UniRef50_Q6D3N1 Cluster: LysR-family transcriptional regulator;
n=31; Gammaproteobacteria|Rep: LysR-family
transcriptional regulator - Erwinia carotovora subsp.
atroseptica (Pectobacterium atrosepticum)
Length = 290
Score = 78.2 bits (184), Expect = 9e-14
Identities = 30/84 (35%), Positives = 55/84 (65%)
Frame = +2
Query: 2 NRRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGY 181
++RYP + SL+TG SG +++ V G L AA +DGP+ + ++G + E+L++++ +
Sbjct: 112 HQRYPNVSLSLNTGTSGEIIERVRAGTLAAALVDGPVVYDELNGCSCFAEQLVLISDPSH 171
Query: 182 APVTRASQVNGSNIYAFRANCSYR 253
+P+T A + ++AFR +CSYR
Sbjct: 172 SPITHARDASNDTLFAFRPSCSYR 195
Score = 68.9 bits (161), Expect = 6e-11
Identities = 28/55 (50%), Positives = 40/55 (72%)
Frame = +1
Query: 262 ESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLESMPGHHQVEAWPL 426
E+WF DG PGTI E+ SYH MLACV +G+G+A++P ++LES+P +V+ L
Sbjct: 199 ENWFRQDGVVPGTIMEIHSYHAMLACVASGSGLAMLPYAVLESLPAGARVQVHEL 253
>UniRef50_Q89K25 Cluster: Transcriptional regulatory protein; n=4;
Proteobacteria|Rep: Transcriptional regulatory protein -
Bradyrhizobium japonicum
Length = 296
Score = 63.7 bits (148), Expect = 2e-09
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Frame = +2
Query: 2 NRRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGY 181
+RR+P ++ SL T + ++ GVLEG L+ AF+ GPI H + +REEL++V+ + +
Sbjct: 113 HRRFPAVRLSLRTATTADLVAGVLEGTLDGAFVAGPIAHADLTATSAFREELVLVSARRW 172
Query: 182 ---APVTRASQVNGSNIYAFRANCSYR 253
A + + +G FR C+YR
Sbjct: 173 SSLAELRAGTPESGPTALVFRTGCTYR 199
Score = 33.1 bits (72), Expect = 3.4
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +1
Query: 307 EMESYHGMLACVIAGAGIALIPRSMLESMPGHHQVEAWPLA 429
E+ + GM+ CV A G+ L+PR+++E + V PL+
Sbjct: 218 ELGTLDGMIGCVAADMGVTLLPRAVVERSAMNGSVSIHPLS 258
>UniRef50_P94501 Cluster: HTH-type transcriptional regulator gltR;
n=1; Bacillus subtilis|Rep: HTH-type transcriptional
regulator gltR - Bacillus subtilis
Length = 296
Score = 63.7 bits (148), Expect = 2e-09
Identities = 30/84 (35%), Positives = 43/84 (51%)
Frame = +2
Query: 2 NRRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGY 181
N YP + +L TGP+ + VL +LN AFI GPI H + V EE+++VT +
Sbjct: 113 NNLYPNVDLNLVTGPTEQQIQAVLHYELNGAFISGPIEHPDLVQEKVLDEEMVLVTSASH 172
Query: 182 APVTRASQVNGSNIYAFRANCSYR 253
++ V + FR CSYR
Sbjct: 173 PVISSIQDVQTQTMVVFRKGCSYR 196
Score = 32.7 bits (71), Expect = 4.5
Identities = 14/52 (26%), Positives = 29/52 (55%)
Frame = +1
Query: 280 DGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLESMPGHHQVEAWPLAEQ 435
+G P + E ++ CV AG GI+L+PRS++ S ++ + ++++
Sbjct: 206 EGLLPIKLMEFGILEAIIGCVSAGLGISLLPRSIIASHEKEGRIRSHTISDK 257
>UniRef50_A4TZY7 Cluster: Transcriptional regulator, LysR family;
n=1; Magnetospirillum gryphiswaldense|Rep:
Transcriptional regulator, LysR family -
Magnetospirillum gryphiswaldense
Length = 286
Score = 62.1 bits (144), Expect = 6e-09
Identities = 31/81 (38%), Positives = 45/81 (55%)
Frame = +2
Query: 11 YPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAPV 190
+P+I SL+TG S ++L VLE + + F GP+ H I G V+ EEL++ P V
Sbjct: 116 HPRIGLSLTTGTSESVLQAVLERRADLGFAGGPVRHDRIVGEAVFTEELVLAVPHS---V 172
Query: 191 TRASQVNGSNIYAFRANCSYR 253
T Q N + FR+ C+YR
Sbjct: 173 TSVEQANTRAMLVFRSGCAYR 193
Score = 42.3 bits (95), Expect = 0.006
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +1
Query: 262 ESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLESMPGHHQVEAWPLAE 432
E+W G P TI E + G+L C+ A G++L+PR ++E Q+ A +A+
Sbjct: 197 ENWLRRRGEPPRTIMEFGTLDGLLGCIAASMGVSLLPRIVVERPHLAGQISALTIAD 253
>UniRef50_Q8Y2W8 Cluster: Probable transcription regulator protein;
n=1; Ralstonia solanacearum|Rep: Probable transcription
regulator protein - Ralstonia solanacearum (Pseudomonas
solanacearum)
Length = 288
Score = 60.5 bits (140), Expect = 2e-08
Identities = 25/56 (44%), Positives = 38/56 (67%)
Frame = +1
Query: 259 FESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLESMPGHHQVEAWPL 426
FE W ++G AP I E+ SYH ++ACV AG GI ++PRS+L+++ Q++ PL
Sbjct: 201 FEEWLASNGIAPARILELASYHAIVACVAAGTGIGIMPRSVLKAVHAEPQLQLLPL 256
Score = 48.8 bits (111), Expect = 6e-05
Identities = 26/84 (30%), Positives = 40/84 (47%)
Frame = +2
Query: 2 NRRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGY 181
+RRYP + L TG S +LD V +++AA I P + + + E L+++ P
Sbjct: 115 HRRYPDVLIELVTGSSAKLLDMVQRYEVDAALISEPFHAPGLATQEAFDEVLVLIAPLTA 174
Query: 182 APVTRASQVNGSNIYAFRANCSYR 253
V + + AF A CSYR
Sbjct: 175 THVLSHDHLQRCTVIAFSAGCSYR 198
>UniRef50_Q1K251 Cluster: Transcriptional regulator, LysR family;
n=1; Desulfuromonas acetoxidans DSM 684|Rep:
Transcriptional regulator, LysR family - Desulfuromonas
acetoxidans DSM 684
Length = 283
Score = 59.7 bits (138), Expect = 3e-08
Identities = 31/84 (36%), Positives = 48/84 (57%)
Frame = +2
Query: 2 NRRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGY 181
+RRYP++ +L + PS L +L+ +++ AFI G ++ AI+ V+ EEL++V P
Sbjct: 113 HRRYPQVALNLVSAPSAESLKKLLDYQVDGAFIAGEVDPQAIESCEVFEEELVLVAPLDI 172
Query: 182 APVTRASQVNGSNIYAFRANCSYR 253
P+T S I FR CSYR
Sbjct: 173 DPLTMES----LKILVFRPGCSYR 192
Score = 41.1 bits (92), Expect = 0.013
Identities = 18/45 (40%), Positives = 28/45 (62%)
Frame = +1
Query: 253 SHFESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLE 387
+ E+W +G E+ S G+LACV AG GI+++PRS++E
Sbjct: 193 ARLENWLRQNGRLGYHSVELGSIEGILACVAAGMGISILPRSVVE 237
>UniRef50_Q44311 Cluster: HTH-type transcriptional regulator soxR;
n=13; Bacteria|Rep: HTH-type transcriptional regulator
soxR - Arthrobacter sp. (strain TE1826)
Length = 289
Score = 57.6 bits (133), Expect = 1e-07
Identities = 29/84 (34%), Positives = 46/84 (54%)
Frame = +2
Query: 2 NRRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGY 181
+++YPKI SL TG + ++D VL KL+ AF+ G NH I V+ EEL++++
Sbjct: 111 HKKYPKIDLSLITGVTEDLVDDVLNYKLDGAFVTGYYNHPQIIQYEVFEEELVLISNYDK 170
Query: 182 APVTRASQVNGSNIYAFRANCSYR 253
P ++ + F+ CSYR
Sbjct: 171 LPF---EELKNKPLLVFKQGCSYR 191
Score = 34.7 bits (76), Expect = 1.1
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +1
Query: 262 ESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLESMPGHHQVEAWPLAEQ 435
E W +G I E + +L VIAG GI +IP+S + + V + + E+
Sbjct: 195 EGWVRDEGEINAKIMEFGTMETILGSVIAGLGITIIPKSTISLLEAEGVVRIYEIPEK 252
>UniRef50_Q4IUI3 Cluster: Regulatory protein, LysR:LysR substrate
binding domain; n=2; Proteobacteria|Rep: Regulatory
protein, LysR:LysR substrate binding domain -
Azotobacter vinelandii AvOP
Length = 296
Score = 56.4 bits (130), Expect = 3e-07
Identities = 32/84 (38%), Positives = 44/84 (52%)
Frame = +2
Query: 2 NRRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGY 181
+R P++ SL TG SG +L VL G+L+AA I GP + G P++ EEL++V P G
Sbjct: 118 HREAPRLDLSLVTGTSGHLLGEVLAGRLDAALIGGPHEDPRLYGEPIWHEELVLVLPAGK 177
Query: 182 APVTRASQVNGSNIYAFRANCSYR 253
SQ + F C YR
Sbjct: 178 TS-AELSQA-PVTLLGFPCGCHYR 199
>UniRef50_A7DGR6 Cluster: Transcriptional regulator, LysR family;
n=1; Methylobacterium extorquens PA1|Rep:
Transcriptional regulator, LysR family -
Methylobacterium extorquens PA1
Length = 298
Score = 56.4 bits (130), Expect = 3e-07
Identities = 25/80 (31%), Positives = 42/80 (52%)
Frame = +2
Query: 14 PKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAPVT 193
P + L TG + ML + ++ AAF+ P + +P + EEL+++T +G V
Sbjct: 123 PNVTIELQTGTTRAMLRQLERFEVEAAFVSEPFERGNLSSMPAFNEELVLITARGVPTVR 182
Query: 194 RASQVNGSNIYAFRANCSYR 253
+A ++ G + AF CSYR
Sbjct: 183 QAVELGGRTVVAFPHGCSYR 202
Score = 46.8 bits (106), Expect = 3e-04
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = +1
Query: 268 WFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLE 387
W GA+P + EM SYH ++ACV AG G A++P +L+
Sbjct: 208 WLAEGGASPQRVLEMSSYHAIVACVAAGTGAAIVPAEVLD 247
>UniRef50_Q483X8 Cluster: Transcriptional regulator, LysR family;
n=1; Colwellia psychrerythraea 34H|Rep: Transcriptional
regulator, LysR family - Colwellia psychrerythraea
(strain 34H / ATCC BAA-681) (Vibriopsychroerythus)
Length = 292
Score = 56.0 bits (129), Expect = 4e-07
Identities = 27/82 (32%), Positives = 42/82 (51%)
Frame = +2
Query: 8 RYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAP 187
RY +I ++ T P+ +L ++EG ++ FI G H + I + EEL++V P+
Sbjct: 114 RYAQIDITVETAPTAQLLTQLIEGDVDGVFIAGKPKHKRLQVIKAFSEELVLVGPKTLQK 173
Query: 188 VTRASQVNGSNIYAFRANCSYR 253
A Q + AFR CSYR
Sbjct: 174 FPTAEQFLETTFLAFRQGCSYR 195
>UniRef50_Q02SS1 Cluster: Putative transcriptional regulator, LysR
family; n=1; Pseudomonas aeruginosa UCBPP-PA14|Rep:
Putative transcriptional regulator, LysR family -
Pseudomonas aeruginosa (strain UCBPP-PA14)
Length = 291
Score = 56.0 bits (129), Expect = 4e-07
Identities = 25/42 (59%), Positives = 32/42 (76%)
Frame = +1
Query: 307 EMESYHGMLACVIAGAGIALIPRSMLESMPGHHQVEAWPLAE 432
E+ESYH MLACV AG G A + RS+L ++PG+HQV A PL +
Sbjct: 215 EIESYHTMLACVSAGMGAAWVLRSVLATLPGNHQVRAHPLRD 256
Score = 50.4 bits (115), Expect = 2e-05
Identities = 21/83 (25%), Positives = 45/83 (54%)
Frame = +2
Query: 5 RRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYA 184
+R+ I+ + + S ++ V +G L+ A DGP+ ++ + +E+++VT +
Sbjct: 113 QRHRAIELDIRSEASEALVQQVSDGVLDLALSDGPVRSQTLESSLAFVDEMVLVTELDHP 172
Query: 185 PVTRASQVNGSNIYAFRANCSYR 253
P+T + + +Y FR +CS+R
Sbjct: 173 PITSPRDLRCAELYGFRHDCSFR 195
>UniRef50_UPI000159799F Cluster: YofA; n=1; Bacillus
amyloliquefaciens FZB42|Rep: YofA - Bacillus
amyloliquefaciens FZB42
Length = 288
Score = 55.6 bits (128), Expect = 6e-07
Identities = 27/82 (32%), Positives = 49/82 (59%)
Frame = +2
Query: 8 RYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAP 187
RYPK+Q SLSTG + T++ +L +L+ AF+ GP+ + ++ + V++EEL++ + +
Sbjct: 115 RYPKVQLSLSTGDTHTLVQHILHYELDGAFVYGPVEYEDLEQVAVFQEELVLASNKREGS 174
Query: 188 VTRASQVNGSNIYAFRANCSYR 253
+ + I F A CS+R
Sbjct: 175 L---QDLLREPILYFAAGCSHR 193
>UniRef50_Q2RTU3 Cluster: Transcriptional Regulator, LysR family
precursor; n=2; Alphaproteobacteria|Rep: Transcriptional
Regulator, LysR family precursor - Rhodospirillum rubrum
(strain ATCC 11170 / NCIB 8255)
Length = 299
Score = 55.6 bits (128), Expect = 6e-07
Identities = 24/86 (27%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Frame = +2
Query: 11 YPKIQFSLSTGPSGTMLDGVLEGKLNAAFI-----DGPINHTAIDGIPVYREELMIVTPQ 175
+P+++ L+T P+ +++ VL +++ A I +G + T +D +PV+RE+L+++ P
Sbjct: 115 WPQVRIELTTAPTRPLIEAVLARRIDCALIALPSGEGWLGPTPLDTVPVFREDLVLLLPH 174
Query: 176 GYAPVTRASQVNGSNIYAFRANCSYR 253
G+ V A + + F C+YR
Sbjct: 175 GHPEVHTAEDIKPRTLATFAPGCTYR 200
Score = 42.3 bits (95), Expect = 0.006
Identities = 18/42 (42%), Positives = 26/42 (61%)
Frame = +1
Query: 301 IHEMESYHGMLACVIAGAGIALIPRSMLESMPGHHQVEAWPL 426
I E+ SYH M AC AG+ ++++PR ++E M VE PL
Sbjct: 219 IQEVRSYHAMFACTAAGSCVSVMPRGLVELMDHREAVEEKPL 260
>UniRef50_Q1N570 Cluster: Putative transcriptional regulator
LYSR-type; n=1; Oceanobacter sp. RED65|Rep: Putative
transcriptional regulator LYSR-type - Oceanobacter sp.
RED65
Length = 285
Score = 54.8 bits (126), Expect = 1e-06
Identities = 20/85 (23%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 NRRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGY 181
++++ ++ S+++ P+G +++ V+EG+++ FIDG ++ + I +Y+E L++V+ +
Sbjct: 112 HQQFSDVELSVASAPTGALIEKVIEGEIDLGFIDGNVSDSRIQSKALYKESLVLVSSLNH 171
Query: 182 APVTRASQVNGS-NIYAFRANCSYR 253
P+ + + + F C+YR
Sbjct: 172 KPIRSPKDLGETPTVLGFNHKCAYR 196
Score = 45.6 bits (103), Expect = 6e-04
Identities = 18/53 (33%), Positives = 33/53 (62%)
Frame = +1
Query: 277 ADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLESMPGHHQVEAWPLAEQ 435
A G+ + E++SYH +L C AG G+ +IPRS++++ P H ++ L ++
Sbjct: 204 AQGSNIPNVIEIQSYHTLLGCAAAGMGVGMIPRSLVDAYPHKHNLKIHTLPKK 256
>UniRef50_A6SYE6 Cluster: Transcriptional regulator, LysR family;
n=1; Janthinobacterium sp. Marseille|Rep:
Transcriptional regulator, LysR family -
Janthinobacterium sp. (strain Marseille) (Minibacterium
massiliensis)
Length = 298
Score = 54.8 bits (126), Expect = 1e-06
Identities = 24/81 (29%), Positives = 42/81 (51%)
Frame = +2
Query: 11 YPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAPV 190
+P++ L+TGP+ ++ G+ EG+ + FI G + + + YREEL++V+ +
Sbjct: 114 HPEVDLKLTTGPTAKLVAGLNEGRFDCVFIAGKLENPRLYQYKAYREELVLVSASPMKSM 173
Query: 191 TRASQVNGSNIYAFRANCSYR 253
A + S F CSYR
Sbjct: 174 PSADTLRASTFLVFGQGCSYR 194
>UniRef50_Q7P201 Cluster: Probable transcriptional regulator, LysR
family; n=1; Chromobacterium violaceum|Rep: Probable
transcriptional regulator, LysR family - Chromobacterium
violaceum
Length = 299
Score = 54.4 bits (125), Expect = 1e-06
Identities = 20/45 (44%), Positives = 30/45 (66%)
Frame = +1
Query: 262 ESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLESMP 396
E W G P + E+ SYH ML+CV G G+AL+P+++L++MP
Sbjct: 198 EQWLQRQGVQPRRVVELSSYHAMLSCVACGMGLALLPQALLDTMP 242
Score = 52.8 bits (121), Expect = 4e-06
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Frame = +2
Query: 8 RYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAP 187
RYP ++ L TG S + VL+G+L+AA + GP++ +D V EE+M+V A
Sbjct: 114 RYPAVRLELQTGESRGLTAAVLDGRLDAALVSGPLDDVRLDQTVVAVEEIMLVAA---AT 170
Query: 188 VTRAS--QVNGSNIYAFRANCSYR 253
+ R S + + + AF + CSYR
Sbjct: 171 LGRPSLEVLADTTLLAFGSGCSYR 194
>UniRef50_A0FRJ0 Cluster: Transcriptional regulator, LysR family;
n=1; Burkholderia phymatum STM815|Rep: Transcriptional
regulator, LysR family - Burkholderia phymatum STM815
Length = 314
Score = 54.0 bits (124), Expect = 2e-06
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +2
Query: 8 RYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAP 187
RYP++Q SL TG + ++ V +L+ AF+ G + ++ V++EEL++V+ +
Sbjct: 115 RYPQVQLSLMTGTTAELIKAVECHRLDGAFVGGFHQNASLHQEEVFQEELVLVSGIEFES 174
Query: 188 V-TRASQVNGSNIYAFRANCSYRPT 259
V AS+++ + AFR C YR T
Sbjct: 175 VDALASRMSAQTVLAFRTGCFYRST 199
Score = 49.6 bits (113), Expect = 4e-05
Identities = 20/48 (41%), Positives = 30/48 (62%)
Frame = +1
Query: 244 FVSSHFESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLE 387
F S E WF G PG + E+ + G+++CV AG G+ L+PRS++E
Sbjct: 195 FYRSTLEHWFFQAGIIPGQVMELGTLDGIMSCVAAGMGVTLLPRSVVE 242
>UniRef50_Q5WCE2 Cluster: LysR family transcriptional regulator;
n=1; Bacillus clausii KSM-K16|Rep: LysR family
transcriptional regulator - Bacillus clausii (strain
KSM-K16)
Length = 280
Score = 53.2 bits (122), Expect = 3e-06
Identities = 23/56 (41%), Positives = 39/56 (69%)
Frame = +2
Query: 2 NRRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVT 169
N++YPK++ SL + ++ VL+ KL+ AF+ GPI+ + IPV++EEL+IV+
Sbjct: 113 NKQYPKVELSLRVALTHELIADVLDYKLDGAFVLGPIHDQQLQAIPVFQEELVIVS 168
Score = 35.5 bits (78), Expect = 0.64
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 262 ESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSML 384
+ W G P I E + ++ CV AG G+A+IP+S++
Sbjct: 194 DQWLETQGYRPDRIIEFGTLESIIHCVQAGLGMAIIPKSLV 234
>UniRef50_A0HF39 Cluster: Transcriptional regulator, LysR family;
n=2; Comamonadaceae|Rep: Transcriptional regulator, LysR
family - Comamonas testosteroni KF-1
Length = 309
Score = 52.8 bits (121), Expect = 4e-06
Identities = 26/83 (31%), Positives = 42/83 (50%)
Frame = +2
Query: 5 RRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYA 184
R +P I L P+ +L + G ++ AFI+G + + P++REEL++V+ Q
Sbjct: 117 RLHPDIDLELDAQPTAALLMELAAGHIDCAFINGAAPQSELHSWPLFREELVLVSGQPLT 176
Query: 185 PVTRASQVNGSNIYAFRANCSYR 253
A+ + AFR CSYR
Sbjct: 177 RFPTAADFGNAVFLAFRQGCSYR 199
>UniRef50_Q62KZ2 Cluster: Transcriptional regulator, LysR family;
n=39; Proteobacteria|Rep: Transcriptional regulator,
LysR family - Burkholderia mallei (Pseudomonas mallei)
Length = 321
Score = 52.4 bits (120), Expect = 5e-06
Identities = 21/41 (51%), Positives = 30/41 (73%)
Frame = +1
Query: 262 ESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSML 384
E W+ A+G P + E+ SYH ++ACV AGAG+A+ PRS+L
Sbjct: 203 ERWYAAEGLKPERVLELGSYHAIVACVAAGAGVAVAPRSVL 243
Score = 45.2 bits (102), Expect = 8e-04
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Frame = +2
Query: 2 NRRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAI----DGIPVYREELMIVT 169
++ +P + L TG +G ++ V + +L+AA + P A+ + + EEL+++T
Sbjct: 112 HQAWPDVTLELVTGTTGKLIGLVRDFELDAALVATPAGSEALGEPFETASAFTEELVLLT 171
Query: 170 PQGYAPVTRASQVNGSNIYAFRANCSYR 253
P+G+ V V + AF C+YR
Sbjct: 172 PRGHPRVRTPRDVRLPTLVAFERGCAYR 199
>UniRef50_Q3A8F8 Cluster: Putative transcriptional regulator
LysR-type; n=1; Pelobacter carbinolicus DSM 2380|Rep:
Putative transcriptional regulator LysR-type -
Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1)
Length = 292
Score = 52.0 bits (119), Expect = 7e-06
Identities = 31/84 (36%), Positives = 42/84 (50%)
Frame = +2
Query: 2 NRRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGY 181
+R YP + LSTG SG M+ VL+ L AF+ G + H I V EEL++VT
Sbjct: 116 HREYPDVDLQLSTGASGEMVQRVLDYSLEGAFVGGRVEHPDIVAEEVLCEELVMVT-SST 174
Query: 182 APVTRASQVNGSNIYAFRANCSYR 253
PV V ++ +R CS R
Sbjct: 175 EPVVDEESV--LSVLVYRRGCSCR 196
Score = 35.9 bits (79), Expect = 0.48
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 262 ESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLESMP 396
E W P + EM + +L CV AG GI ++PRS + P
Sbjct: 200 EEWLKHTRRTPSRVVEMGALDAILGCVGAGMGITMLPRSFVTREP 244
>UniRef50_A1TIU1 Cluster: Transcriptional regulator, LysR family;
n=3; Proteobacteria|Rep: Transcriptional regulator, LysR
family - Acidovorax avenae subsp. citrulli (strain
AAC00-1)
Length = 294
Score = 52.0 bits (119), Expect = 7e-06
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Frame = +2
Query: 8 RYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGP---INHTA-IDGIPVYREELMIVTPQ 175
R+P +Q L TG S ++D VL + A + P ++ A +D PV+ E L+I P
Sbjct: 114 RWPGLQLELRTGASRELVDQVLAHASDCALVAWPPPGVDPEAPVDCTPVFTESLLIALPA 173
Query: 176 GYAPVTRASQVNGSNIYAFRANCSYR 253
G+ PV R + + AF C+YR
Sbjct: 174 GHPPVERPGDLQVDTLAAFSPGCTYR 199
Score = 41.1 bits (92), Expect = 0.013
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +1
Query: 262 ESWFHAD--GAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLESMPGHHQVEAWPLA 429
E W A GAAP + E+ SYH +LACV AG ++P+S+++ M + PLA
Sbjct: 203 EDWMRAQRHGAAPHIL-ELASYHAILACVAAGRCAGVVPQSVIDLMREPPALRWVPLA 259
>UniRef50_A3M7J7 Cluster: Transcriptional regulator LysR family;
n=1; Acinetobacter baumannii ATCC 17978|Rep:
Transcriptional regulator LysR family - Acinetobacter
baumannii (strain ATCC 17978 / NCDC KC 755)
Length = 269
Score = 50.8 bits (116), Expect = 2e-05
Identities = 23/83 (27%), Positives = 45/83 (54%)
Frame = +2
Query: 5 RRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYA 184
+++P + L T P+G +L+ V +G+++ AF+ + PV++E+L++V P+
Sbjct: 90 QQHPNLPLELQTHPTGYLLNAVQQGEVDCAFVASKYVIPELYSFPVWQEQLVLVCPKQQI 149
Query: 185 PVTRASQVNGSNIYAFRANCSYR 253
+ + + AFR CSYR
Sbjct: 150 DFPDIATLAKTRFIAFRQGCSYR 172
Score = 34.7 bits (76), Expect = 1.1
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 262 ESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLESM 393
E + + P I EM S G+++CV G G AL+P+S L +
Sbjct: 176 ELFLNDHSVPPSQIMEMGSLDGIVSCVELGVGFALLPKSYLNKV 219
>UniRef50_Q5LKQ5 Cluster: Transcriptional regulator, LysR family;
n=3; Alphaproteobacteria|Rep: Transcriptional regulator,
LysR family - Silicibacter pomeroyi
Length = 294
Score = 50.0 bits (114), Expect = 3e-05
Identities = 24/81 (29%), Positives = 40/81 (49%)
Frame = +2
Query: 11 YPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAPV 190
+P + S+ TG S +++ VL + A + GP+ H ++ PV+RE+L IV + +
Sbjct: 116 HPAVDLSIQTGTSRELVEMVLAHGVEGALVCGPVAHPDLEATPVFREDLCIVARRDGRSL 175
Query: 191 TRASQVNGSNIYAFRANCSYR 253
+ G R CSYR
Sbjct: 176 DQVLGAPGVRQLVLRLGCSYR 196
>UniRef50_O32186 Cluster: Uncharacterized HTH-type transcriptional
regulator yusT; n=2; Bacillus|Rep: Uncharacterized
HTH-type transcriptional regulator yusT - Bacillus
subtilis
Length = 295
Score = 50.0 bits (114), Expect = 3e-05
Identities = 27/83 (32%), Positives = 43/83 (51%)
Frame = +2
Query: 11 YPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAPV 190
+P +Q SL+TG + +LD VL +L+ AFI +H ++ P + EE ++V+ A V
Sbjct: 116 HPNVQLSLTTGHTQFLLDKVLRYELDGAFIGCECHHPELESYPAFEEEPVVVSA---ASV 172
Query: 191 TRASQVNGSNIYAFRANCSYRPT 259
+ I + CSYR T
Sbjct: 173 PDVEEAITKPILVYSTGCSYRET 195
Score = 37.1 bits (82), Expect = 0.21
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +1
Query: 262 ESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLESMPGHHQVEAWPLAE 432
E W + G I E + ++ V AG GI+L+PR++++ + +PL E
Sbjct: 197 EKWLRSVGVTQPVIMEFGTLEAIIGGVTAGLGISLLPRTVVQKHEAEGSIRLYPLPE 253
>UniRef50_Q5FQ95 Cluster: Transcriptional regulator; n=1;
Gluconobacter oxydans|Rep: Transcriptional regulator -
Gluconobacter oxydans (Gluconobacter suboxydans)
Length = 290
Score = 49.2 bits (112), Expect = 5e-05
Identities = 21/50 (42%), Positives = 30/50 (60%)
Frame = +1
Query: 244 FVSSHFESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLESM 393
F +FE+W G + IH +ESY +LACV AG GI+ +P S+L +
Sbjct: 191 FYRRYFETWLERHGVSNAIIHTVESYDVILACVQAGLGISCVPHSILSQV 240
Score = 41.1 bits (92), Expect = 0.013
Identities = 20/80 (25%), Positives = 41/80 (51%)
Frame = +2
Query: 14 PKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAPVT 193
P ++ + P+ T+ + +G+++ A DGPI H I+ +RE+L + P+
Sbjct: 119 PGVELKMFLRPTYTLERMLTDGEIDLALTDGPIVHPLIESRFAFREKLALAMPE-----D 173
Query: 194 RASQVNGSNIYAFRANCSYR 253
+ +G +++ F +C YR
Sbjct: 174 QKGARDGQHVFLFNTDCFYR 193
>UniRef50_Q3F171 Cluster: Transcriptional regulators, LysR family;
n=2; Bacillus cereus group|Rep: Transcriptional
regulators, LysR family - Bacillus thuringiensis serovar
israelensis ATCC 35646
Length = 304
Score = 48.0 bits (109), Expect = 1e-04
Identities = 21/84 (25%), Positives = 40/84 (47%)
Frame = +2
Query: 2 NRRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGY 181
N +PK++ SL T + ++ VL +++ AFI + + IPV+ E L ++ G
Sbjct: 121 NETFPKVELSLETNTTEELIKAVLMREIDGAFIADSASSPLLAEIPVFHETLELLAKNGK 180
Query: 182 APVTRASQVNGSNIYAFRANCSYR 253
+ + + F++ C YR
Sbjct: 181 KSIVSLEDLKDQKLIVFKSGCFYR 204
Score = 37.9 bits (84), Expect = 0.12
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +1
Query: 244 FVSSHFESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLESMPGHHQVEAWP 423
F E+W + G P E+ + G++ CV AG GI ++ R++ M + +P
Sbjct: 202 FYRKKLENWLLSKGIVPQNTMELNTLDGIIGCVKAGLGITMLTRAVANQMDFTGGLTHYP 261
Query: 424 LAEQ 435
L +
Sbjct: 262 LPHE 265
>UniRef50_Q6ARK3 Cluster: Probable transcriptional regulator; n=1;
Desulfotalea psychrophila|Rep: Probable transcriptional
regulator - Desulfotalea psychrophila
Length = 286
Score = 47.2 bits (107), Expect = 2e-04
Identities = 24/78 (30%), Positives = 41/78 (52%)
Frame = +2
Query: 20 IQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAPVTRA 199
+ SL TG S ++ VLE K++ AF+ G +NH I V EEL++ + ++ + +
Sbjct: 119 VNLSLLTGTSEEIILKVLEHKVDCAFVGGKVNHPDIMQYKVIEEELVLFNKKPFSSIEES 178
Query: 200 SQVNGSNIYAFRANCSYR 253
+ + FR C+YR
Sbjct: 179 KNI---TLLVFREGCAYR 193
Score = 32.7 bits (71), Expect = 4.5
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 253 SHFESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLE-SMPGHHQVEAWP 423
+H + W G I E + +L CV AG G+ ++PR++ E H +V+ P
Sbjct: 194 AHLKHWLSYYGIRQYKIMEFGALDTILGCVEAGMGLTILPRAVAERPQYAHFKVQNLP 251
>UniRef50_O34685 Cluster: Uncharacterized HTH-type transcriptional
regulator yofA; n=1; Bacillus subtilis|Rep:
Uncharacterized HTH-type transcriptional regulator yofA
- Bacillus subtilis
Length = 285
Score = 47.2 bits (107), Expect = 2e-04
Identities = 23/83 (27%), Positives = 47/83 (56%)
Frame = +2
Query: 5 RRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYA 184
RR+P++ S++T + ++ VL+ K++ AF+ GP+ H A+ + V +EL++++ +
Sbjct: 114 RRFPEVDLSVNTADTHHLIQQVLDHKVDGAFVYGPVEHAAVRQLHVSHDELVLISSR--- 170
Query: 185 PVTRASQVNGSNIYAFRANCSYR 253
A + + F A CS+R
Sbjct: 171 -EGTAEDMLQQPMLFFGAGCSHR 192
>UniRef50_Q6F7L3 Cluster: Putative transcriptional regulator; n=2;
Acinetobacter|Rep: Putative transcriptional regulator -
Acinetobacter sp. (strain ADP1)
Length = 284
Score = 46.4 bits (105), Expect = 3e-04
Identities = 19/84 (22%), Positives = 41/84 (48%)
Frame = +2
Query: 2 NRRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGY 181
++ YP + + TG +L V + KL+AA + G I+ ++ + +Y+E ++++ P
Sbjct: 106 HQHYPDVSIQIITGTWKQLLLDVSQHKLDAAMVAGAIDFPCLNKVEIYQENMVLIAPASM 165
Query: 182 APVTRASQVNGSNIYAFRANCSYR 253
+ + I+ + C YR
Sbjct: 166 GIIRNQEDLINKEIFMWTEGCPYR 189
>UniRef50_Q11K77 Cluster: Transcriptional regulator, LysR family;
n=1; Mesorhizobium sp. BNC1|Rep: Transcriptional
regulator, LysR family - Mesorhizobium sp. (strain BNC1)
Length = 305
Score = 46.0 bits (104), Expect = 5e-04
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Frame = +2
Query: 8 RYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTP----Q 175
RYP+++ G S +LD +L +LN + P H A+D P+ E + +V P +
Sbjct: 116 RYPQMKLRFVEGFSSLVLDQLLNQELNLCILHNPSEHKALDITPLEPESMYLVGPPKDSE 175
Query: 176 GYAPVTRASQVNGSNIYAFRANCSYR---PTSRAGFMLTVPL 292
G PV +Q+ G I RA R SR G L V L
Sbjct: 176 GLPPVDEETQLEGLPIILPRAPHGLRFALEQSRLGRQLNVAL 217
>UniRef50_Q81YI9 Cluster: Transcriptional regulator, LysR family;
n=12; Bacillus cereus group|Rep: Transcriptional
regulator, LysR family - Bacillus anthracis
Length = 283
Score = 45.2 bits (102), Expect = 8e-04
Identities = 22/82 (26%), Positives = 42/82 (51%)
Frame = +2
Query: 8 RYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAP 187
+YP+++ L T + ++ VL+ KL+ AFI G H + + EEL++++ +
Sbjct: 116 KYPEVELILETNTTEQLIKLVLDRKLDGAFIAGSTQHNELHSNVFHEEELVLISKK---T 172
Query: 188 VTRASQVNGSNIYAFRANCSYR 253
++ + N+ AF C YR
Sbjct: 173 LSSLKDIEDMNLLAFSHGCYYR 194
Score = 34.3 bits (75), Expect = 1.5
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 244 FVSSHFESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLESMPGH-HQVEAW 420
+ S E W + +P + E + +LACV + G+A++ +S+L+ GH H V
Sbjct: 192 YYRSLLEDWLQEEDISPKRVLEFGTIEAILACVKSSMGVAIMMKSILK---GHEHDVSFN 248
Query: 421 PL 426
PL
Sbjct: 249 PL 250
>UniRef50_Q11E30 Cluster: Transcriptional regulator, LysR family;
n=9; Rhizobiales|Rep: Transcriptional regulator, LysR
family - Mesorhizobium sp. (strain BNC1)
Length = 300
Score = 44.8 bits (101), Expect = 0.001
Identities = 21/67 (31%), Positives = 38/67 (56%)
Frame = +2
Query: 11 YPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAPV 190
YP IQ L+ G + T+ + VL+G+ F++G I A+ + + + LMIV + P
Sbjct: 117 YPGIQIDLTLGNTRTVAEAVLDGRAEVGFVEGEIEAAALSSVIISEDALMIVVSANH-PW 175
Query: 191 TRASQVN 211
++AS ++
Sbjct: 176 SKASSLS 182
>UniRef50_Q0SIJ4 Cluster: Probable transcriptional regulator, LysR
family protein; n=1; Rhodococcus sp. RHA1|Rep: Probable
transcriptional regulator, LysR family protein -
Rhodococcus sp. (strain RHA1)
Length = 299
Score = 44.8 bits (101), Expect = 0.001
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +2
Query: 14 PKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAPV- 190
P++ F+L+T + + V+E +L+ AF+ GP+ H + V+ E+L++V+ A +
Sbjct: 117 PRVDFTLATDTTDALTTQVIEHRLDGAFVCGPVRHPDLVSEQVFIEQLVLVSGVRVADLD 176
Query: 191 TRASQVNGSNIYAFRANCSYR 253
+ + + RA C+YR
Sbjct: 177 SIMADGRRHKVLVLRAGCAYR 197
>UniRef50_Q4KFG8 Cluster: Transcriptional regulator, LysR family;
n=1; Pseudomonas fluorescens Pf-5|Rep: Transcriptional
regulator, LysR family - Pseudomonas fluorescens (strain
Pf-5 / ATCC BAA-477)
Length = 288
Score = 44.4 bits (100), Expect = 0.001
Identities = 20/84 (23%), Positives = 41/84 (48%)
Frame = +2
Query: 2 NRRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGY 181
++RYPK+ L TG + + +L +++ A + + +Y E L++++
Sbjct: 113 HKRYPKVSVELVTGTWSQLFEELLHQRIDGALVAIDSLPAKLQQTVLYHEPLVLISSGNS 172
Query: 182 APVTRASQVNGSNIYAFRANCSYR 253
AP+ AS + N++ + C YR
Sbjct: 173 APIRSASDLQHHNLFMWPPGCPYR 196
>UniRef50_A0NXC4 Cluster: Transcriptional regulator; n=1; Stappia
aggregata IAM 12614|Rep: Transcriptional regulator -
Stappia aggregata IAM 12614
Length = 279
Score = 44.4 bits (100), Expect = 0.001
Identities = 26/80 (32%), Positives = 42/80 (52%)
Frame = +2
Query: 29 SLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAPVTRASQV 208
SL+TGP+ +L V + K++AAF+ GP++ + + + E L V G A+
Sbjct: 121 SLTTGPTAELLSKVWDRKIDAAFVAGPVDASRFRAVRAFSERL--VCTYG------AASP 172
Query: 209 NGSNIYAFRANCSYRPTSRA 268
+ AFR CSYR ++A
Sbjct: 173 QSGPLLAFRQGCSYRAAAQA 192
Score = 33.9 bits (74), Expect = 2.0
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +1
Query: 262 ESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLESMPGHHQVEAWPL 426
++W + G + + EM + G+L CV AG G + P S + Q+ PL
Sbjct: 191 QAWLGSIGQSDREVTEMGTLEGILGCVEAGLGFTVAPESAVLGFRNADQLTTTPL 245
>UniRef50_Q46QV9 Cluster: Regulatory protein, LysR:LysR,
substrate-binding; n=4; Burkholderiales|Rep: Regulatory
protein, LysR:LysR, substrate-binding - Ralstonia
eutropha (strain JMP134) (Alcaligenes eutrophus)
Length = 295
Score = 43.6 bits (98), Expect = 0.002
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = +1
Query: 298 TIHEMESYHGMLACVIAGAGIALIPRSMLESMPGHHQVEAWPL 426
++ EM SYH +LACV AG+ A++PRS+L P ++ P+
Sbjct: 225 SVIEMPSYHAILACVTAGSAAAIVPRSLLAMYPDATDLQTVPV 267
Score = 38.7 bits (86), Expect = 0.069
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Frame = +2
Query: 11 YPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHT-----------AIDGIPVYREEL 157
+P+++ L+TG +G ++D VL +L+ A + P T ++G+ + EEL
Sbjct: 115 WPEVELKLTTGTTGFLVDAVLGHRLDCAVVAHPGTGTPRNTSMAALGEGLEGVFLRTEEL 174
Query: 158 MIVTPQGYAPVTRASQVNGSNIYAFRANCSYR 253
+++ P + V ++ AF C+YR
Sbjct: 175 VLILPGTHTRARGPRDVTLRHLAAFSKGCTYR 206
>UniRef50_Q2BLJ9 Cluster: Regulatory protein, LysR:LysR,
substrate-binding; n=3; Proteobacteria|Rep: Regulatory
protein, LysR:LysR, substrate-binding - Neptuniibacter
caesariensis
Length = 287
Score = 43.6 bits (98), Expect = 0.002
Identities = 28/83 (33%), Positives = 43/83 (51%)
Frame = +2
Query: 5 RRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYA 184
+ +P + + + +G ++D VL KL+ AF+ GPINH + V EEL+IV+ A
Sbjct: 114 KAHPDLVPKVQSSTTGQLVDDVLNHKLDCAFVGGPINHPDLICHQVLLEELVIVS----A 169
Query: 185 PVTRASQVNGSNIYAFRANCSYR 253
T V + FR C+YR
Sbjct: 170 KSTDVPNV----LIMFREGCAYR 188
Score = 37.9 bits (84), Expect = 0.12
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 262 ESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLE 387
ESW +G + M + G+L CV G G L+PR ++E
Sbjct: 192 ESWLKENGKINADVMSMGTQEGILGCVAVGLGFTLVPRKVVE 233
>UniRef50_A6T911 Cluster: Putative transcriptional regulator; n=1;
Klebsiella pneumoniae subsp. pneumoniae MGH 78578|Rep:
Putative transcriptional regulator - Klebsiella
pneumoniae subsp. pneumoniae MGH 78578
Length = 281
Score = 43.6 bits (98), Expect = 0.002
Identities = 23/57 (40%), Positives = 31/57 (54%)
Frame = +1
Query: 262 ESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLESMPGHHQVEAWPLAE 432
E W A+ A +HE+ SYH MLACV +G L+P+S+L M + PL E
Sbjct: 197 ERWL-AEQQAAVEVHEVNSYHSMLACVASGRYACLLPQSVLSLMTLPENCLSEPLCE 252
>UniRef50_A5NZG7 Cluster: Transcriptional regulator, LysR family;
n=1; Methylobacterium sp. 4-46|Rep: Transcriptional
regulator, LysR family - Methylobacterium sp. 4-46
Length = 313
Score = 43.6 bits (98), Expect = 0.002
Identities = 19/58 (32%), Positives = 34/58 (58%)
Frame = +2
Query: 11 YPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYA 184
+P + +LS G + +L+G+ EG+L+AA I PI + P++RE ++ P +A
Sbjct: 123 FPLLALALSEGRTAGILEGLREGRLDAALISLPIAEAGLTVAPLFREPFLLACPADHA 180
>UniRef50_A4J4H0 Cluster: Transcriptional regulator, LysR family;
n=1; Desulfotomaculum reducens MI-1|Rep: Transcriptional
regulator, LysR family - Desulfotomaculum reducens MI-1
Length = 303
Score = 43.6 bits (98), Expect = 0.002
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = +2
Query: 2 NRRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGY 181
N YP++ L + ++D +L+ KL+ I+GP+ H I P +EL++V P +
Sbjct: 114 NHDYPEVTIHLEVTNTRHIVDHILDNKLDLGLIEGPVTHDNIISKPFMEDELLVVLPYNH 173
>UniRef50_A3RQS4 Cluster: Transcriptional regulators, LysR family;
n=2; Proteobacteria|Rep: Transcriptional regulators,
LysR family - Ralstonia solanacearum UW551
Length = 291
Score = 43.6 bits (98), Expect = 0.002
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Frame = +2
Query: 8 RYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGP--------INHTAIDGIPVYREELMI 163
++P + LSTGPS +L+ V G L+ AF+ P + +D +RE L +
Sbjct: 114 KHPATRLELSTGPSRLLLEKVRTGGLDCAFVALPPSFGGAADLEELGLDAKVTWRENLRL 173
Query: 164 VTPQGYAPVTRASQVNGSNIYAFRANCSYR 253
+ P + R + ++ AF C+YR
Sbjct: 174 LLPVSESKARRVVDIRTRSLAAFPQGCTYR 203
Score = 41.9 bits (94), Expect = 0.007
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +1
Query: 283 GAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLE 387
G+ + EM SYH M+ACV AGA + L+P S+L+
Sbjct: 214 GSTEWRVQEMASYHAMIACVAAGACVTLLPESVLK 248
>UniRef50_Q65NT8 Cluster: YtlI; n=1; Bacillus licheniformis ATCC
14580|Rep: YtlI - Bacillus licheniformis (strain DSM 13
/ ATCC 14580)
Length = 294
Score = 42.7 bits (96), Expect = 0.004
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Frame = +2
Query: 11 YPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAPV 190
YPKI+ S+ S + + +++G L+ A P T + P+Y EEL+++ P+G+ P
Sbjct: 116 YPKIRVSVDIANSSALGERLVQGSLDLAVCSTPAMGTDLYFEPLYAEELVVLLPEGH-PA 174
Query: 191 TRASQVNGSNIYAFRA-----NCSYRPTSRAGF 274
+++ +I R NC+YR F
Sbjct: 175 GNNERIHLKDIREHRLLITANNCTYRKKVEIAF 207
>UniRef50_Q9I5M0 Cluster: Probable transcriptional regulator; n=5;
Pseudomonas aeruginosa|Rep: Probable transcriptional
regulator - Pseudomonas aeruginosa
Length = 284
Score = 42.3 bits (95), Expect = 0.006
Identities = 21/62 (33%), Positives = 30/62 (48%)
Frame = +2
Query: 68 VLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAPVTRASQVNGSNIYAFRANCS 247
++EG+L+ DGPI H + +RE L+ VTP P + G +Y F C
Sbjct: 134 LMEGELDLIVTDGPIEHPLLASRLAFRERLLRVTPAD-LPAPTPEDLAGLELYVFGHTCH 192
Query: 248 YR 253
YR
Sbjct: 193 YR 194
Score = 36.3 bits (80), Expect = 0.37
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 262 ESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLESMP 396
+ W P E+ESY + AC+ AG G A +P S + P
Sbjct: 198 DRWLAESAIQPRATLEIESYPSLFACIEAGLGFACVPESFVARRP 242
>UniRef50_A6DK62 Cluster: Hydrogen peroxide-inducible genes
activator; n=1; Lentisphaera araneosa HTCC2155|Rep:
Hydrogen peroxide-inducible genes activator -
Lentisphaera araneosa HTCC2155
Length = 293
Score = 42.3 bits (95), Expect = 0.006
Identities = 19/60 (31%), Positives = 35/60 (58%)
Frame = +2
Query: 2 NRRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGY 181
++ YP+++F + + T+L + EGK++AAFI P + +D ++ EE + TP Y
Sbjct: 114 HQSYPEMKFFIKEEKTETLLKMLKEGKVDAAFIALPHEDSTLDSEFIFSEEFLFATPANY 173
>UniRef50_A5NYP7 Cluster: Transcriptional regulator, LysR family;
n=1; Methylobacterium sp. 4-46|Rep: Transcriptional
regulator, LysR family - Methylobacterium sp. 4-46
Length = 308
Score = 41.5 bits (93), Expect = 0.010
Identities = 19/52 (36%), Positives = 32/52 (61%)
Frame = +2
Query: 11 YPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIV 166
YP+++ SL+ G S T +DGV +G L+ A I+ P + P+ EE+++V
Sbjct: 117 YPQVELSLADGYSSTFIDGVGDGSLDLAVINKPNRRLGLMMEPLLDEEMVVV 168
>UniRef50_Q8GEJ2 Cluster: Putative uncharacterized protein; n=1;
Erwinia pyrifoliae|Rep: Putative uncharacterized protein
- Erwinia pyrifoliae
Length = 213
Score = 40.7 bits (91), Expect = 0.017
Identities = 24/74 (32%), Positives = 35/74 (47%)
Frame = -3
Query: 253 TIRTIGAEGINVTAINLTGTGYWRISLWRDDHQFLAVYRYPVDGSMVNGSINKRRIQFSL 74
++ +GA+GIN N G R+ D HQ L RY M+ ++NK R +
Sbjct: 12 SVGAVGAKGINGRTGNAGGIVNRRMIHRADQHQILGENRYTFQLRMLRRAVNKGRAVPAR 71
Query: 73 QYTIQHSAGRAGGK 32
Q+ + H A GGK
Sbjct: 72 QHAVNHVARGPGGK 85
>UniRef50_Q0KDZ3 Cluster: Transcriptional regulator, LysR-family;
n=1; Ralstonia eutropha H16|Rep: Transcriptional
regulator, LysR-family - Ralstonia eutropha (strain ATCC
17699 / H16 / DSM 428 / Stanier 337)(Cupriavidus necator
(strain ATCC 17699 / H16 / DSM 428 / Stanier337))
Length = 315
Score = 40.7 bits (91), Expect = 0.017
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +2
Query: 5 RRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYA 184
+RYP+I+ L + + D +L+G L+ + GP++ + +P+ E L + P G A
Sbjct: 117 QRYPEIRLRLVENFAPALQDALLQGTLDVGLLSGPVSSPGVSVVPLVAESLCAIGPWGAA 176
>UniRef50_Q01RY1 Cluster: Transcriptional regulator, LysR family;
n=1; Solibacter usitatus Ellin6076|Rep: Transcriptional
regulator, LysR family - Solibacter usitatus (strain
Ellin6076)
Length = 307
Score = 40.7 bits (91), Expect = 0.017
Identities = 15/57 (26%), Positives = 33/57 (57%)
Frame = +2
Query: 11 YPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGY 181
+P IQFS+ +G + ++ + +G++ I+GP + + P +E+++VTP +
Sbjct: 117 FPAIQFSIISGNTSDIVAALADGRIGLGLIEGPAGRSDVKCEPFVEDEIVLVTPPAH 173
>UniRef50_Q1IQA4 Cluster: Transcriptional regulator, LysR family;
n=1; Acidobacteria bacterium Ellin345|Rep:
Transcriptional regulator, LysR family - Acidobacteria
bacterium (strain Ellin345)
Length = 300
Score = 40.3 bits (90), Expect = 0.022
Identities = 17/66 (25%), Positives = 36/66 (54%)
Frame = +2
Query: 5 RRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYA 184
++YP++ ++ +LD V ++ + P++ + +P++REEL+I+TP G+
Sbjct: 115 KQYPRVGVNIRRSEHAKILDAVNFNAVDFGVVSLPVSDKRLSVVPIHREELVIMTPPGHP 174
Query: 185 PVTRAS 202
R S
Sbjct: 175 LSKRKS 180
>UniRef50_A7B645 Cluster: Putative uncharacterized protein; n=1;
Ruminococcus gnavus ATCC 29149|Rep: Putative
uncharacterized protein - Ruminococcus gnavus ATCC 29149
Length = 204
Score = 40.3 bits (90), Expect = 0.022
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +2
Query: 20 IQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAPVTRA 199
IQF+ TG + +LDG+ K + F P +P+ ++ L+++TPQ + P++
Sbjct: 26 IQFTFHTGVTQYLLDGLAARKYDLVFCSQPSEEHKFTAVPIQKQNLILITPQSH-PLSAK 84
Query: 200 SQVN 211
V+
Sbjct: 85 DSVD 88
>UniRef50_Q1WRA3 Cluster: Transcriptional regulators, LysR family;
n=1; Lactobacillus salivarius subsp. salivarius
UCC118|Rep: Transcriptional regulators, LysR family -
Lactobacillus salivarius subsp. salivarius (strain
UCC118)
Length = 298
Score = 39.9 bits (89), Expect = 0.030
Identities = 21/76 (27%), Positives = 39/76 (51%)
Frame = +2
Query: 8 RYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAP 187
+ P +F G S ++LD + E K++ AF N +D PVY ++L +TP + P
Sbjct: 120 KQPSFEFESGIGFSHSILDELREEKVDVAFCSKIDNLDDVDYFPVYEQKLKFITPLDH-P 178
Query: 188 VTRASQVNGSNIYAFR 235
+ +++N + F+
Sbjct: 179 LANKNKINLKDTLDFK 194
>UniRef50_P0ACR6 Cluster: Uncharacterized HTH-type transcriptional
regulator yeiE; n=23; Proteobacteria|Rep:
Uncharacterized HTH-type transcriptional regulator yeiE
- Escherichia coli O157:H7
Length = 293
Score = 39.9 bits (89), Expect = 0.030
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = +2
Query: 11 YPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMI----VTPQG 178
YP++ LS G S ++ VL+ +++ FI+GP + T I P +EL++ +P
Sbjct: 115 YPQLPIELSVGNSQDVMQAVLDFRVDIGFIEGPCHSTEIISEPWLEDELVVFAAPTSPLA 174
Query: 179 YAPVT 193
PVT
Sbjct: 175 RGPVT 179
>UniRef50_A6TLX8 Cluster: Transcriptional regulator, LysR family;
n=3; Clostridiaceae|Rep: Transcriptional regulator, LysR
family - Alkaliphilus metalliredigens QYMF
Length = 305
Score = 39.5 bits (88), Expect = 0.039
Identities = 16/57 (28%), Positives = 32/57 (56%)
Frame = +2
Query: 2 NRRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTP 172
N+ YP + F++ S ++DG++ G+++ I I H + + + +EL+ VTP
Sbjct: 114 NKMYPHVTFTMRHYDSKQVVDGIINGEIDFGIIGRNIPHKQLQYVELNHDELLFVTP 170
>UniRef50_A5UU78 Cluster: Transcriptional regulator, LysR family;
n=3; Chloroflexaceae|Rep: Transcriptional regulator,
LysR family - Roseiflexus sp. RS-1
Length = 290
Score = 39.5 bits (88), Expect = 0.039
Identities = 18/67 (26%), Positives = 37/67 (55%)
Frame = +2
Query: 2 NRRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGY 181
+RRYP I+ L G + ++ VL+ +L+ A+++GP+ + + P +EL+++ +
Sbjct: 115 HRRYPGIELFLDIGNTQQIVRHVLDHRLDVAYVEGPVEQSDLVLTPWREDELVVIASPDH 174
Query: 182 APVTRAS 202
R S
Sbjct: 175 PLAQRPS 181
>UniRef50_A5GAJ4 Cluster: Transcriptional regulator, LysR family;
n=1; Geobacter uraniumreducens Rf4|Rep: Transcriptional
regulator, LysR family - Geobacter uraniumreducens Rf4
Length = 296
Score = 39.5 bits (88), Expect = 0.039
Identities = 19/57 (33%), Positives = 32/57 (56%)
Frame = +2
Query: 11 YPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGY 181
YPK+ L G SGT++ G+ +L+A +I G +AI I + + +L + P G+
Sbjct: 117 YPKLSLQLRQGISGTVVQGIKNRELDAGYILGQNEDSAIATIGLKKIKLYVAAPAGW 173
>UniRef50_Q7WNR8 Cluster: LysR-family transcriptional regulator;
n=3; Bordetella|Rep: LysR-family transcriptional
regulator - Bordetella bronchiseptica (Alcaligenes
bronchisepticus)
Length = 337
Score = 39.1 bits (87), Expect = 0.052
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +2
Query: 2 NRRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGY 181
+ YP I+ S+ + S ++ G+L G++NA F N + + + EL++V PQ +
Sbjct: 145 HEHYPLIELSIESRNSSSVRQGILTGEINAGFYVSCTNEANLREYEIGQRELVVVAPQSW 204
>UniRef50_A4FND6 Cluster: LysR-family transcriptional regulator;
n=4; Actinomycetales|Rep: LysR-family transcriptional
regulator - Saccharopolyspora erythraea (strain NRRL
23338)
Length = 286
Score = 39.1 bits (87), Expect = 0.052
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 283 GAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLESMPG 399
G P H + +H ++A V AG G+AL+PR+ + PG
Sbjct: 206 GFVPRITHTSDDFHAVVALVAAGTGVALVPRTAIGDHPG 244
>UniRef50_UPI00004DBFCC Cluster: UPI00004DBFCC related cluster; n=3;
Xenopus tropicalis|Rep: UPI00004DBFCC UniRef100 entry -
Xenopus tropicalis
Length = 302
Score = 38.7 bits (86), Expect = 0.069
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +2
Query: 8 RYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIV 166
RYP +Q ++ G S T+ + VL GKL+AA + + P+ RE+L +V
Sbjct: 116 RYPNVQLFVAEGVSATLHEAVLTGKLDAAVVSDAEPLGVLRSRPLLREQLYLV 168
>UniRef50_Q3ABX5 Cluster: Transcriptional regulator, LysR family;
n=1; Carboxydothermus hydrogenoformans Z-2901|Rep:
Transcriptional regulator, LysR family -
Carboxydothermus hydrogenoformans (strain Z-2901 / DSM
6008)
Length = 301
Score = 38.7 bits (86), Expect = 0.069
Identities = 15/65 (23%), Positives = 37/65 (56%)
Frame = +2
Query: 2 NRRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGY 181
N YP+++ +L +G ++ +L+G + + I + ++ +P Y++EL+ + P +
Sbjct: 114 NLAYPQVKVNLEISDTGDVVAKILDGIYDVGAVGSEIKNPRLEFVPFYKDELVFILPANH 173
Query: 182 APVTR 196
P+T+
Sbjct: 174 -PLTQ 177
>UniRef50_Q2BJ50 Cluster: Regulatory protein, LysR:LysR,
substrate-binding; n=2; Gammaproteobacteria|Rep:
Regulatory protein, LysR:LysR, substrate-binding -
Neptuniibacter caesariensis
Length = 289
Score = 38.7 bits (86), Expect = 0.069
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +2
Query: 11 YPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQG--YA 184
+P+I+ + T S ++ +L +++ A I H + IP+ EEL++VTP G Y
Sbjct: 115 HPEIKLKMFTDTSDRLVGSILNSQVDCAVIGNAPEHEELITIPLVCEELVVVTPLGDSYE 174
Query: 185 PV 190
P+
Sbjct: 175 PI 176
Score = 32.7 bits (71), Expect = 4.5
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 268 WFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSML 384
W HA G + M S G+L C+ AG G +I ++M+
Sbjct: 193 WQHAAGRGDEELMVMSSSDGVLGCIAAGLGYTVIGKNMV 231
>UniRef50_Q4LAH2 Cluster: Similar to LysR-gltR family transcription
regulator; n=1; Staphylococcus haemolyticus
JCSC1435|Rep: Similar to LysR-gltR family transcription
regulator - Staphylococcus haemolyticus (strain
JCSC1435)
Length = 288
Score = 38.3 bits (85), Expect = 0.091
Identities = 23/83 (27%), Positives = 43/83 (51%)
Frame = +2
Query: 5 RRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYA 184
++ PKIQ +L T S +++ V +++ AFI G IN + ++ E+L+I++ +G
Sbjct: 112 KKNPKIQINLKTDNSIKLIEHVKNREMDCAFISGNINDKDLICTNIFNEKLVILSQKGN- 170
Query: 185 PVTRASQVNGSNIYAFRANCSYR 253
+ + +I F C YR
Sbjct: 171 --FKQNINENKSIIMFGEGCFYR 191
>UniRef50_Q9X5P2 Cluster: Probable hydrogen peroxide-inducible genes
activator; n=6; Actinomycetales|Rep: Probable hydrogen
peroxide-inducible genes activator - Streptomyces
viridosporus
Length = 312
Score = 38.3 bits (85), Expect = 0.091
Identities = 14/55 (25%), Positives = 32/55 (58%)
Frame = +2
Query: 8 RYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTP 172
RYP++ + + ++LDG+ G+L+ + P+ + +P++ E+ ++VTP
Sbjct: 123 RYPRLDLQVHEEQTASLLDGLTGGRLDLLLLAVPLGVPGVVELPLFDEDFVLVTP 177
>UniRef50_Q6A6A6 Cluster: Oxidative stress transcriptional
regulatory protein; n=1; Propionibacterium acnes|Rep:
Oxidative stress transcriptional regulatory protein -
Propionibacterium acnes
Length = 314
Score = 37.9 bits (84), Expect = 0.12
Identities = 15/52 (28%), Positives = 30/52 (57%)
Frame = +2
Query: 14 PKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVT 169
P + + + +L+ + G+L+ A + P+N ++ IPV+REE ++VT
Sbjct: 118 PGVNIHIVEKRTAELLEAIRNGQLDVAAVAAPVNDDSLVTIPVFREEFLLVT 169
>UniRef50_A6E9M2 Cluster: Putative uncharacterized protein; n=1;
Pedobacter sp. BAL39|Rep: Putative uncharacterized
protein - Pedobacter sp. BAL39
Length = 288
Score = 37.9 bits (84), Expect = 0.12
Identities = 19/82 (23%), Positives = 38/82 (46%)
Frame = +2
Query: 8 RYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAP 187
++P + + +++ VL KL+AAFI P++ ++ I + E+++IV P
Sbjct: 115 KFPFVDLDFRSAMRASLISDVLNYKLDAAFIPAPLDVPELEQIKIKDEQVVIVAPADCEN 174
Query: 188 VTRASQVNGSNIYAFRANCSYR 253
+ + N F C +R
Sbjct: 175 LDMLLKKNPLKTIVFDQGCVFR 196
>UniRef50_A4YNR9 Cluster: Transcriptional regulator of oxidative
stress, regulates intracellular hydrogen peroxide; n=22;
Alphaproteobacteria|Rep: Transcriptional regulator of
oxidative stress, regulates intracellular hydrogen
peroxide - Bradyrhizobium sp. (strain ORS278)
Length = 309
Score = 37.5 bits (83), Expect = 0.16
Identities = 13/59 (22%), Positives = 35/59 (59%)
Frame = +2
Query: 5 RRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGY 181
R++P+I + + +++ ++EG+L+AA + P++ ++ + ++ E ++V P Y
Sbjct: 118 RKHPEIDIHVRESKTPKLIEELVEGRLDAAIVALPVSEPSLTEVALFSENFLLVRPPEY 176
>UniRef50_Q81QI6 Cluster: Transcriptional regulator, LysR family;
n=11; Bacillus|Rep: Transcriptional regulator, LysR
family - Bacillus anthracis
Length = 300
Score = 37.1 bits (82), Expect = 0.21
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +2
Query: 2 NRRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGY 181
N YP I+ S+ +G + + +L+ +L+ P+ I P+Y EL+IV P G+
Sbjct: 117 NNLYPNIELSVLGLRTGDIREKLLQNELDIGITFLPVQDKEIISAPLYESELIIVVPTGH 176
>UniRef50_Q1DBZ6 Cluster: Transcriptional regulator, LysR family;
n=1; Myxococcus xanthus DK 1622|Rep: Transcriptional
regulator, LysR family - Myxococcus xanthus (strain DK
1622)
Length = 311
Score = 37.1 bits (82), Expect = 0.21
Identities = 16/59 (27%), Positives = 33/59 (55%)
Frame = +2
Query: 5 RRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGY 181
R++P+++ LS G + M +GV G L+ A + P+ + ++ E L++ P+G+
Sbjct: 115 RQFPEVRPRLSEGLAPAMEEGVARGALDLAILSLPVRRADLVAQRLWEESLVLAVPRGH 173
>UniRef50_A1WJ01 Cluster: Transcriptional regulator, LysR family;
n=1; Verminephrobacter eiseniae EF01-2|Rep:
Transcriptional regulator, LysR family -
Verminephrobacter eiseniae (strain EF01-2)
Length = 326
Score = 37.1 bits (82), Expect = 0.21
Identities = 19/42 (45%), Positives = 24/42 (57%)
Frame = +1
Query: 256 HFESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSM 381
H E F + AP I E YH +L+ V G G+ALIPRS+
Sbjct: 208 HCERIFARNRFAPPRIIEPSDYHILLSLVAEGQGVALIPRSL 249
>UniRef50_Q7NKC0 Cluster: Nitrogen assimilation transcriptional
activator; n=1; Gloeobacter violaceus|Rep: Nitrogen
assimilation transcriptional activator - Gloeobacter
violaceus
Length = 326
Score = 36.7 bits (81), Expect = 0.28
Identities = 18/68 (26%), Positives = 39/68 (57%)
Frame = +2
Query: 5 RRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYA 184
+++P Q L++ S ++ +L+ ++AA + GP++ + P+Y EEL+++ P +
Sbjct: 126 QKHPGTQLRLTSLGSERIIKVLLDRLVDAAILMGPVHSPELVSTPLYEEELVVLLP-AHH 184
Query: 185 PVTRASQV 208
P+ R V
Sbjct: 185 PLARRPSV 192
>UniRef50_Q6F9I5 Cluster: Putative transcriptional regulator; n=2;
Acinetobacter|Rep: Putative transcriptional regulator -
Acinetobacter sp. (strain ADP1)
Length = 306
Score = 36.7 bits (81), Expect = 0.28
Identities = 16/73 (21%), Positives = 37/73 (50%)
Frame = +2
Query: 11 YPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAPV 190
+P + FS+ P+ +++ VL+G P+ H ++ P++ E+ + + P+ + P+
Sbjct: 123 HPNLSFSIHDIPNERIIENVLDGIFELGLCFQPVLHEQLEFKPLFDEDFLALLPKSH-PL 181
Query: 191 TRASQVNGSNIYA 229
+ V +YA
Sbjct: 182 AQQKTVQWPELYA 194
>UniRef50_A6M050 Cluster: Transcriptional regulator, LysR family;
n=1; Clostridium beijerinckii NCIMB 8052|Rep:
Transcriptional regulator, LysR family - Clostridium
beijerinckii NCIMB 8052
Length = 291
Score = 36.7 bits (81), Expect = 0.28
Identities = 21/69 (30%), Positives = 35/69 (50%)
Frame = +2
Query: 5 RRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYA 184
+ YP+IQ + GP + VL+G L+ AF GPIN + V + + V
Sbjct: 115 KTYPQIQLDIYEGPDYYCEEAVLKGDLDIAFTIGPINKSKFHS-KVVKTQHPCVLINEKN 173
Query: 185 PVTRASQVN 211
P+++ S++N
Sbjct: 174 PLSKKSKIN 182
>UniRef50_A1B7J2 Cluster: Transcriptional regulator, LysR family;
n=2; Alphaproteobacteria|Rep: Transcriptional regulator,
LysR family - Paracoccus denitrificans (strain Pd 1222)
Length = 386
Score = 36.7 bits (81), Expect = 0.28
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +2
Query: 11 YPKIQFSLSTGPSGTMLDGVLEGKLNAAFI-DGPINHTAIDGIPVYREELMIVTPQGYAP 187
+P ++ L G S ++ V G+L+AA I + ++ +D P RE L ++ P G
Sbjct: 205 HPGLKIRLLVGNSENLVQDVYAGRLDAAIIAENSLSSRDLDWSPFIREPLFLIAPPGTPV 264
Query: 188 VTRASQVNGSNIYAFRAN 241
V ++ FR+N
Sbjct: 265 VDVRQALSAFPFVRFRSN 282
>UniRef50_Q5YWC3 Cluster: Putative transcriptional regulator; n=1;
Nocardia farcinica|Rep: Putative transcriptional
regulator - Nocardia farcinica
Length = 307
Score = 36.3 bits (80), Expect = 0.37
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +1
Query: 277 ADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLESMPGHHQVEAWPLAEQ 435
A G P H ++ + +L V AGAG+AL+P ++ +P ++ A P+ +
Sbjct: 214 AHGFEPRVAHHIDDFATVLRLVAAGAGVALVPHLGVDHLPAGVRLAALPVGRR 266
>UniRef50_Q47D52 Cluster: Regulatory protein, LysR:LysR,
substrate-binding; n=1; Dechloromonas aromatica RCB|Rep:
Regulatory protein, LysR:LysR, substrate-binding -
Dechloromonas aromatica (strain RCB)
Length = 292
Score = 36.3 bits (80), Expect = 0.37
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +2
Query: 2 NRRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGY 181
NRRYP +S + ++ +L +++ FI+GP+N I P R+EL + +
Sbjct: 114 NRRYPASHIQVSRHNTEQVVARLLTFQIDLGFIEGPVNDPHIACFPWRRDELQVFAAPDH 173
Query: 182 APVTRASQV 208
V R V
Sbjct: 174 PLVDRQVSV 182
>UniRef50_Q28M96 Cluster: Transcriptional regulator LysR family;
n=1; Jannaschia sp. CCS1|Rep: Transcriptional regulator
LysR family - Jannaschia sp. (strain CCS1)
Length = 297
Score = 36.3 bits (80), Expect = 0.37
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = +2
Query: 8 RYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAP 187
R+P++ G + T + + EGKL+ F+ GPI D V E L V P +
Sbjct: 118 RHPRVTLKPQHGVTQTQIRLLEEGKLDLGFVTGPIVRDGFDQRVVQSEALQAVVPDSHPF 177
Query: 188 VTRAS 202
RA+
Sbjct: 178 AGRAT 182
>UniRef50_Q1ATU8 Cluster: Transcriptional regulator, LysR family;
n=1; Rubrobacter xylanophilus DSM 9941|Rep:
Transcriptional regulator, LysR family - Rubrobacter
xylanophilus (strain DSM 9941 / NBRC 16129)
Length = 301
Score = 35.9 bits (79), Expect = 0.48
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +2
Query: 5 RRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTA--IDGIPVYREELMIVTPQG 178
RRYP + S ++ +LEG + F+ P +H + ++ P RE+L+ V P+G
Sbjct: 115 RRYPGVDLVPREMHSSVQVEALLEGSIEVGFLRLPSDHESDELEVRPFVREQLVAVLPRG 174
Query: 179 Y 181
+
Sbjct: 175 H 175
>UniRef50_A6BIN0 Cluster: Putative uncharacterized protein; n=1;
Dorea longicatena DSM 13814|Rep: Putative
uncharacterized protein - Dorea longicatena DSM 13814
Length = 302
Score = 35.9 bits (79), Expect = 0.48
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +2
Query: 2 NRRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTP 172
N RYPK Q L S ++ +++ ++ F + IP Y++EL+++TP
Sbjct: 114 NERYPKEQVKLLETDSSQVVTKIIDHMVDVGFTGTVLEKKHCKYIPFYKDELIVITP 170
>UniRef50_A0KEM0 Cluster: Transcriptional regulator IlvY; n=2;
Aeromonas|Rep: Transcriptional regulator IlvY -
Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966
/ NCIB 9240)
Length = 297
Score = 35.9 bits (79), Expect = 0.48
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +1
Query: 223 LCLPRQLFVSSHFESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLESMP 396
L L Q + W G AP E+ G++A V G G+ L+P ++++ P
Sbjct: 193 LILSEQGLARKRCDQWLRNKGIAPNIYAEVAGNEGIVAMVALGFGVGLVPAAVIDHSP 250
>UniRef50_Q3W6A3 Cluster: Regulatory protein, LysR:LysR substrate
binding domain; n=2; Actinomycetales|Rep: Regulatory
protein, LysR:LysR substrate binding domain - Frankia
sp. EAN1pec
Length = 299
Score = 35.5 bits (78), Expect = 0.64
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +2
Query: 68 VLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGY 181
+L+G+++ ++ PI+ T + P+Y E LM+V P G+
Sbjct: 134 LLDGRIDVGYVRLPIDETGLRVTPLYTEPLMVVLPAGH 171
>UniRef50_Q0BXT0 Cluster: Putative oxidative stress regulatory
protein OxyR; n=1; Hyphomonas neptunium ATCC 15444|Rep:
Putative oxidative stress regulatory protein OxyR -
Hyphomonas neptunium (strain ATCC 15444)
Length = 309
Score = 35.5 bits (78), Expect = 0.64
Identities = 18/73 (24%), Positives = 41/73 (56%)
Frame = +2
Query: 5 RRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYA 184
RRYP ++ L+ + ++D + L+AAFI P I+ + ++ +E ++ P G+
Sbjct: 120 RRYPDLKLYLTEDRTHRLIDQLRARTLDAAFIALPWEAPGIEMMTLFDDEFLLAAPAGH- 178
Query: 185 PVTRASQVNGSNI 223
P++R + ++ ++
Sbjct: 179 PLSRKNGLSPEDL 191
>UniRef50_A6SYC1 Cluster: Transcriptional regulator, LysR family;
n=3; Proteobacteria|Rep: Transcriptional regulator, LysR
family - Janthinobacterium sp. (strain Marseille)
(Minibacterium massiliensis)
Length = 305
Score = 35.5 bits (78), Expect = 0.64
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +2
Query: 11 YPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAPV 190
YP+I L S +L V G++ +DG + + + +P ++L+++ P G+A
Sbjct: 119 YPEIDLQLVEHKSADVLLAVQSGEVEVGVLDGNLATSDVIPLPFRHDKLVLLVPSGHALA 178
Query: 191 TRAS-QVNGSNIYAF 232
R S Q+ + +AF
Sbjct: 179 ERPSVQLKDALGFAF 193
>UniRef50_Q9PD47 Cluster: Oxidative stress transcriptional
regulator; n=15; Proteobacteria|Rep: Oxidative stress
transcriptional regulator - Xylella fastidiosa
Length = 325
Score = 35.1 bits (77), Expect = 0.84
Identities = 17/63 (26%), Positives = 34/63 (53%)
Frame = +2
Query: 8 RYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAP 187
R+P+++ L S +L + EGKL+AA + P++ + ++ E ++ P+G+
Sbjct: 130 RFPQLELLLVEEKSDELLAQLREGKLDAALLALPLHDEQLHTEFLFEEPFVLAVPEGHPL 189
Query: 188 VTR 196
TR
Sbjct: 190 ATR 192
>UniRef50_Q18AT1 Cluster: LysR-family transcriptional regulator;
n=3; Clostridium difficile|Rep: LysR-family
transcriptional regulator - Clostridium difficile
(strain 630)
Length = 301
Score = 35.1 bits (77), Expect = 0.84
Identities = 14/57 (24%), Positives = 32/57 (56%)
Frame = +2
Query: 11 YPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGY 181
YP ++FS+S S + +L +++ + IN+ I+ + + +EL+++TP +
Sbjct: 117 YPDVKFSISHYDSQYAISEILNERISFGLVGSKINNPQIEYLDLLDDELVLITPSDF 173
>UniRef50_A1W2B2 Cluster: Transcriptional regulator, LysR family;
n=12; cellular organisms|Rep: Transcriptional regulator,
LysR family - Acidovorax sp. (strain JS42)
Length = 302
Score = 35.1 bits (77), Expect = 0.84
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = +2
Query: 5 RRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYA 184
RR P + L S ++ V EG+ + + G + ++ +P R+ L++V P+G+A
Sbjct: 117 RRNPDVNIDLRERLSHDIVRAVTEGQTDIGIVAGLVRTENLETLPYRRDRLVLVVPRGHA 176
>UniRef50_P52659 Cluster: HTH-type transcriptional regulator araB;
n=7; Actinomycetales|Rep: HTH-type transcriptional
regulator araB - Streptomyces antibioticus
Length = 301
Score = 35.1 bits (77), Expect = 0.84
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = +1
Query: 244 FVSSHFESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPR 375
FVS ++ S F AA GT+ + +L+C AGAG+A++PR
Sbjct: 204 FVSRYWASVFDCAPAATGTVI-VPDLRAVLSCASAGAGLAVLPR 246
>UniRef50_Q1QWJ6 Cluster: Transcriptional regulator, LysR family;
n=1; Chromohalobacter salexigens DSM 3043|Rep:
Transcriptional regulator, LysR family -
Chromohalobacter salexigens (strain DSM 3043 / ATCC
BAA-138 / NCIMB13768)
Length = 307
Score = 34.7 bits (76), Expect = 1.1
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +1
Query: 328 MLACVIAGAGIALIPRSMLESMPGHHQVEAWPLAE 432
+L V G G ++PRS++E+ P QV+ PLAE
Sbjct: 225 VLDAVARGLGFTVVPRSVMETSPWQRQVKELPLAE 259
>UniRef50_Q1DAH1 Cluster: Transcriptional activator, LysR family;
n=1; Myxococcus xanthus DK 1622|Rep: Transcriptional
activator, LysR family - Myxococcus xanthus (strain DK
1622)
Length = 303
Score = 34.7 bits (76), Expect = 1.1
Identities = 17/71 (23%), Positives = 37/71 (52%)
Frame = +2
Query: 11 YPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAPV 190
+P++ L + + +LE +L+ A P++ + P++R+EL+ V P G+ P+
Sbjct: 124 HPEVDLRLDVEATRSAEAALLEDRLDVALCCYPVSTPGLVSTPLFRDELVAVLPAGH-PL 182
Query: 191 TRASQVNGSNI 223
V+G ++
Sbjct: 183 AARPYVSGPDL 193
>UniRef50_Q1AYT0 Cluster: Transcriptional regulator, LysR family;
n=1; Rubrobacter xylanophilus DSM 9941|Rep:
Transcriptional regulator, LysR family - Rubrobacter
xylanophilus (strain DSM 9941 / NBRC 16129)
Length = 293
Score = 34.7 bits (76), Expect = 1.1
Identities = 15/65 (23%), Positives = 31/65 (47%)
Frame = +2
Query: 2 NRRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGY 181
+ R+P+++ +L S L+ + EGK+ F+ P+ V+ E ++ P+G+
Sbjct: 114 HERFPEVRVTLHEWTSSVQLERMREGKIEIGFMRAPVEEAGFVTEHVFVEPVVAALPEGH 173
Query: 182 APVTR 196
R
Sbjct: 174 PQARR 178
>UniRef50_A7IF06 Cluster: Transcriptional regulator, LysR family;
n=4; Alphaproteobacteria|Rep: Transcriptional regulator,
LysR family - Xanthobacter sp. (strain Py2)
Length = 325
Score = 34.7 bits (76), Expect = 1.1
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +2
Query: 5 RRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTP 172
RRYPKI+ ++ SG +LD + EGK++ + + + V EEL ++ P
Sbjct: 115 RRYPKIKLRVAEAMSGFVLDWLREGKIDLGVLYRSVADRTLLARRVLSEELCLLGP 170
>UniRef50_A3RXQ5 Cluster: Transcriptional regulators, LysR family;
n=2; Ralstonia solanacearum|Rep: Transcriptional
regulators, LysR family - Ralstonia solanacearum UW551
Length = 310
Score = 34.7 bits (76), Expect = 1.1
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = +1
Query: 277 ADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLESMPGHHQVEAWPLAEQ 435
A G +P +HE+ S +A V G GIAL+P +M P + V PL E+
Sbjct: 217 AHGFSPRVLHEVRSVASQVAFVGCGQGIALVPAAMKSFAPDN--VVVRPLTER 267
>UniRef50_A1W2B9 Cluster: Transcriptional regulator, LysR family;
n=5; Comamonadaceae|Rep: Transcriptional regulator, LysR
family - Acidovorax sp. (strain JS42)
Length = 308
Score = 34.7 bits (76), Expect = 1.1
Identities = 17/67 (25%), Positives = 36/67 (53%)
Frame = +2
Query: 8 RYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAP 187
RYP +Q ++ SG + + ++ G+L+ P + I+ P++ E + +V QG+ P
Sbjct: 116 RYPGVQLTVRDLRSGQIEELLIAGRLDLGIAFHPASREEIEAEPLFEERMHLVVHQGH-P 174
Query: 188 VTRASQV 208
+ R ++
Sbjct: 175 LARRQRL 181
>UniRef50_A1SY80 Cluster: Transcriptional regulator,
substrate-binding of LysR family protein; n=1;
Psychromonas ingrahamii 37|Rep: Transcriptional
regulator, substrate-binding of LysR family protein -
Psychromonas ingrahamii (strain 37)
Length = 294
Score = 34.7 bits (76), Expect = 1.1
Identities = 16/57 (28%), Positives = 33/57 (57%)
Frame = +2
Query: 5 RRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQ 175
+RYP IQ ++ + T+ + +L+G+L+ A I +H I I + +E+++ P+
Sbjct: 115 QRYPGIQINIHEAGTATLANMLLDGELDLAMIRADRHHDNIRCITLAKEQIVACVPR 171
>UniRef50_A0VW09 Cluster: Transcriptional regulator, LysR family;
n=1; Dinoroseobacter shibae DFL 12|Rep: Transcriptional
regulator, LysR family - Dinoroseobacter shibae DFL 12
Length = 303
Score = 34.7 bits (76), Expect = 1.1
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 8 RYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTA-IDGIPVYREELMIVTP 172
RYP + F ++ G S ++ V G+L+AA + + A + PV E L+I+ P
Sbjct: 114 RYPDLGFEMTVGMSERLMADVAAGRLDAALVAEHVGVPATLSWSPVLNEPLVIIAP 169
>UniRef50_O87883 Cluster: Probable hydrogen peroxide-inducible genes
activator; n=8; Corynebacterineae|Rep: Probable hydrogen
peroxide-inducible genes activator - Mycobacterium
xenopi
Length = 189
Score = 34.7 bits (76), Expect = 1.1
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +2
Query: 8 RYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGY 181
R P + + + +L + EG L+AA I P + + +P+Y E+ ++ P G+
Sbjct: 123 RLPALTLRVVEDQTERLLAALREGALDAALIALPAETSGLSAVPIYDEDFVLALPPGH 180
>UniRef50_Q7VS13 Cluster: LysR-family transcriptional regulator;
n=3; Bordetella|Rep: LysR-family transcriptional
regulator - Bordetella pertussis
Length = 296
Score = 34.3 bits (75), Expect = 1.5
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +1
Query: 262 ESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLESMPG 399
++WF A A + E+ S A V AGAG+AL+ S PG
Sbjct: 207 QAWFDAQSVAARPVIEVGSPQNTCALVQAGAGVALVDEFSARSWPG 252
>UniRef50_Q67L57 Cluster: LysR-family transcriptional regulator;
n=1; Symbiobacterium thermophilum|Rep: LysR-family
transcriptional regulator - Symbiobacterium thermophilum
Length = 291
Score = 34.3 bits (75), Expect = 1.5
Identities = 17/81 (20%), Positives = 36/81 (44%)
Frame = +2
Query: 11 YPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAPV 190
YP I L G + +L +LE + + AF+ ++ + I ++ + +++VT P+
Sbjct: 116 YPAIPVDLRPGHNREVLHQLLEYEADVAFLASRVSAPGVKAIKLFSDPMLLVTHPAAEPL 175
Query: 191 TRASQVNGSNIYAFRANCSYR 253
R + G + + R
Sbjct: 176 ERLRDLAGRTLLVLQPGAGMR 196
>UniRef50_Q39MQ8 Cluster: Transcriptional regulator, LysR family;
n=4; Burkholderia cepacia complex|Rep: Transcriptional
regulator, LysR family - Burkholderia sp. (strain 383)
(Burkholderia cepacia (strain ATCC 17760/ NCIB 9086 /
R18194))
Length = 291
Score = 34.3 bits (75), Expect = 1.5
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 262 ESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPR 375
E W A G A ++ ++ +L CV AG G+A++P+
Sbjct: 198 EHWLRARGIAIESVASFGTFGAILGCVAAGMGVAILPK 235
>UniRef50_Q0SIM9 Cluster: Probable transcriptional regulator, LysR
family protein; n=1; Rhodococcus sp. RHA1|Rep: Probable
transcriptional regulator, LysR family protein -
Rhodococcus sp. (strain RHA1)
Length = 306
Score = 34.3 bits (75), Expect = 1.5
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 283 GAAPGTIHEMESYHGMLACVIAGAGIALIPR-SMLESMPGHHQVEAWP 423
G P ++E Y + A V AG GIA++PR ++ P H V P
Sbjct: 218 GFTPNVVYEAHDYQEIEAMVAAGVGIAMVPRLAVAHHRPDVHAVRFLP 265
>UniRef50_Q0SEE3 Cluster: Transcriptional regulator, LysR family
protein; n=2; Actinomycetales|Rep: Transcriptional
regulator, LysR family protein - Rhodococcus sp. (strain
RHA1)
Length = 292
Score = 34.3 bits (75), Expect = 1.5
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +2
Query: 8 RYPKIQFSL--STGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGY 181
+YP++ + + GP+G +L + G+ ID ++H+A+ +P+ +EL++ P
Sbjct: 116 QYPRVTVRIIDADGPTG-VLGALRRGEAELGVIDLSVDHSALRSVPIGDQELVLALPDAL 174
Query: 182 A 184
A
Sbjct: 175 A 175
>UniRef50_Q0S1L3 Cluster: Possible transcriptional regulator, LysR
family protein; n=10; Actinomycetales|Rep: Possible
transcriptional regulator, LysR family protein -
Rhodococcus sp. (strain RHA1)
Length = 249
Score = 34.3 bits (75), Expect = 1.5
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +2
Query: 2 NRRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGY 181
N R P + +L + D + G+ +A + PI+ T + IP+Y E ++V P+ +
Sbjct: 28 NERLPDVPLTLVPVAAADAPDQLRGGRADAGLVRLPIDRTGLSAIPLYTEIPVVVAPKDH 87
>UniRef50_A6WET0 Cluster: Transcriptional regulator, LysR family;
n=2; Actinomycetales|Rep: Transcriptional regulator,
LysR family - Kineococcus radiotolerans SRS30216
Length = 313
Score = 34.3 bits (75), Expect = 1.5
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +1
Query: 283 GAAPGTIHEMESYHGMLACVIAGAGIALIPR 375
G AP H + + + A V AGAG+ALIPR
Sbjct: 226 GFAPDVRHHTQDWDALAALVAAGAGVALIPR 256
>UniRef50_A5CNV0 Cluster: Putative uncharacterized protein; n=3;
Bacteria|Rep: Putative uncharacterized protein -
Clavibacter michiganensis subsp. michiganensis (strain
NCPPB 382)
Length = 327
Score = 34.3 bits (75), Expect = 1.5
Identities = 23/64 (35%), Positives = 34/64 (53%)
Frame = +2
Query: 89 AAFIDGPINHTAIDGIPVYREELMIVTPQGYAPVTRASQVNGSNIYAFRANCSYRPTSRA 268
AA+++GP DGI + +E L TP+ VTR V G +YA +A+ T+R
Sbjct: 159 AAYVEGPDFEEPQDGITLLQEFLEAATPR----VTRVEIVGGRFVYAIQAD-----TARG 209
Query: 269 GFML 280
G+ L
Sbjct: 210 GYQL 213
>UniRef50_A4JSC2 Cluster: Transcriptional regulator, LysR family;
n=3; Burkholderia|Rep: Transcriptional regulator, LysR
family - Burkholderia vietnamiensis (strain G4 / LMG
22486) (Burkholderiacepacia (strain R1808))
Length = 303
Score = 34.3 bits (75), Expect = 1.5
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +2
Query: 5 RRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGY 181
R YP + S ++D VLE +++AA + P++ + P+ E + V P G+
Sbjct: 116 RDYPDVLIHCEESNSPALIDKVLEARVDAALVRLPLDCRGLAVQPLVEERFLAVLPSGH 174
>UniRef50_A0JQZ0 Cluster: Transcriptional regulator, LysR family;
n=2; Arthrobacter|Rep: Transcriptional regulator, LysR
family - Arthrobacter sp. (strain FB24)
Length = 242
Score = 34.3 bits (75), Expect = 1.5
Identities = 14/58 (24%), Positives = 29/58 (50%)
Frame = +2
Query: 8 RYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGY 181
R P + G L + +G + +F+ P+ ++ IP+Y E+ ++V P+G+
Sbjct: 22 RMPDVPLQSFMSDDGAQLLVLRDGSADLSFVRLPVEREGLNVIPLYEEQPVVVAPKGH 79
>UniRef50_UPI0000DAE53B Cluster: hypothetical protein
Rgryl_01000580; n=1; Rickettsiella grylli|Rep:
hypothetical protein Rgryl_01000580 - Rickettsiella
grylli
Length = 310
Score = 33.9 bits (74), Expect = 2.0
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +2
Query: 14 PKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYA 184
PKI L + +L + EGKL+A + PI H + P+++E ++ P+ +A
Sbjct: 118 PKITLYLYEDKTENLLIQLKEGKLDAVVLALPIPHKGLYLRPLFKEPFFLIMPRSHA 174
>UniRef50_UPI0000D5689E Cluster: PREDICTED: similar to CG17142-PA,
isoform A; n=1; Tribolium castaneum|Rep: PREDICTED:
similar to CG17142-PA, isoform A - Tribolium castaneum
Length = 1090
Score = 33.9 bits (74), Expect = 2.0
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Frame = -3
Query: 469 DARPARLLTNAIAQLTATLQPGDAPAYFPA*S--AE*AQCLLLRSHRPTFRD---KTPSH 305
DA ARLL +A AQLT+ P + A S +E + LL R P RD +TP H
Sbjct: 272 DAESARLLIDAGAQLTSENHKKQTPLHLAALSQCSETLELLLARGCNPNARDADGRTPLH 331
Query: 304 G 302
G
Sbjct: 332 G 332
>UniRef50_Q3JDU2 Cluster: NADH dehydrogenase; n=2;
Proteobacteria|Rep: NADH dehydrogenase - Nitrosococcus
oceani (strain ATCC 19707 / NCIMB 11848)
Length = 470
Score = 33.9 bits (74), Expect = 2.0
Identities = 18/34 (52%), Positives = 21/34 (61%)
Frame = +1
Query: 325 GMLACVIAGAGIALIPRSMLESMPGHHQVEAWPL 426
G LA V AGIA + R MLE MPG ++ WPL
Sbjct: 235 GFLAVVPKAAGIAALLRFMLEGMPG--EMVGWPL 266
>UniRef50_A6P2N5 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 301
Score = 33.9 bits (74), Expect = 2.0
Identities = 12/56 (21%), Positives = 29/56 (51%)
Frame = +2
Query: 5 RRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTP 172
+ +P+ F + S +++G+L G + I +H + +P Y + ++++TP
Sbjct: 112 KAHPEAYFIIHQSDSRGVIEGILNGNFDLGMIGMKYDHEDLTCVPFYLDRMVLITP 167
>UniRef50_P67667 Cluster: Uncharacterized HTH-type transcriptional
regulator Rv2282c/MT2340; n=11; Mycobacterium|Rep:
Uncharacterized HTH-type transcriptional regulator
Rv2282c/MT2340 - Mycobacterium tuberculosis
Length = 312
Score = 33.9 bits (74), Expect = 2.0
Identities = 23/77 (29%), Positives = 36/77 (46%)
Frame = +2
Query: 68 VLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAPVTRASQVNGSNIYAFRANCS 247
V +G + FI+ P T + + V R+EL++V P G+ R S+V + A +
Sbjct: 148 VRDGIADLGFIENPCPPTGLGSVVVARDELVVVVPPGH-KWARRSRVVSARELAQTPLVT 206
Query: 248 YRPTSRAGFMLTVPLRE 298
P S LT LR+
Sbjct: 207 REPNSGIRDSLTAALRD 223
>UniRef50_P52677 Cluster: Probable hydrogen peroxide-inducible genes
activator; n=7; Mycobacterium|Rep: Probable hydrogen
peroxide-inducible genes activator - Mycobacterium avium
Length = 311
Score = 33.9 bits (74), Expect = 2.0
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +2
Query: 8 RYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGY 181
R P + ++ + +L + EG L+AA I P + IP+Y E+ ++ P G+
Sbjct: 123 RRPGLTLRVTEDQTERLLAVLREGALDAALIALPAETAGVTAIPIYDEDFVLALPPGH 180
>UniRef50_Q46P94 Cluster: Regulatory protein, LysR:LysR,
substrate-binding; n=1; Ralstonia eutropha JMP134|Rep:
Regulatory protein, LysR:LysR, substrate-binding -
Ralstonia eutropha (strain JMP134) (Alcaligenes
eutrophus)
Length = 296
Score = 33.5 bits (73), Expect = 2.6
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +1
Query: 235 RQLFVSSHFESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRS 378
RQ H ++ F G P + E +H +L V G GIAL+P+S
Sbjct: 200 RQPAFYDHCQAVFSRHGFTPSKLREPADHHVLLGEVANGRGIALLPKS 247
>UniRef50_Q1FKI4 Cluster: Regulatory protein, LysR:LysR,
substrate-binding; n=1; Clostridium phytofermentans
ISDg|Rep: Regulatory protein, LysR:LysR,
substrate-binding - Clostridium phytofermentans ISDg
Length = 299
Score = 33.5 bits (73), Expect = 2.6
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = +2
Query: 17 KIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTP 172
K++FS++ G S ++ +L+ K F+ + IP Y ++L++VTP
Sbjct: 118 KVRFSINQGDSDHVIGEILKHKAAIGFVGIKSKDDRLRYIPFYEDKLVVVTP 169
>UniRef50_Q13PB2 Cluster: Transcriptional regulator, LysR family;
n=1; Burkholderia xenovorans LB400|Rep: Transcriptional
regulator, LysR family - Burkholderia xenovorans (strain
LB400)
Length = 304
Score = 33.5 bits (73), Expect = 2.6
Identities = 10/43 (23%), Positives = 25/43 (58%)
Frame = +2
Query: 8 RYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGI 136
RYP++ ++ + T+++ V G++ A + GP++ A + +
Sbjct: 115 RYPRVSIAIEVALTNTLIERVRNGEMEVAIVTGPLHEPAFEHV 157
>UniRef50_A4J6T9 Cluster: Transcriptional regulator, LysR family;
n=1; Desulfotomaculum reducens MI-1|Rep: Transcriptional
regulator, LysR family - Desulfotomaculum reducens MI-1
Length = 299
Score = 33.5 bits (73), Expect = 2.6
Identities = 18/68 (26%), Positives = 34/68 (50%)
Frame = +2
Query: 5 RRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYA 184
+ YP +Q L G S + +LE + A + N+ I+GI + +EL+++ P +
Sbjct: 115 KEYPDVQTVLQIGDSKEAIRKLLEESAHLAAVGILPNNKRIEGIKFFSDELVVIAPTDH- 173
Query: 185 PVTRASQV 208
P ++V
Sbjct: 174 PFAELNEV 181
>UniRef50_A3JY71 Cluster: Transcriptional regulator, LysR family
protein; n=3; Rhodobacteraceae|Rep: Transcriptional
regulator, LysR family protein - Sagittula stellata E-37
Length = 298
Score = 33.5 bits (73), Expect = 2.6
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Frame = +2
Query: 8 RYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPIN-HTAIDGIPVYREELMIVTPQGYA 184
RYP ++ SL S T++ V G+L+AA + + + P RE L ++ P+G
Sbjct: 114 RYPDLKPSLRVSLSSTLIADVAGGRLDAAIVAEHLGIPNTLRWSPFLREPLWLIVPRGME 173
Query: 185 PVTRASQVNGSNIYAFR-----ANCSYRPTSRAGFMLTVPLRELSMRWSLIT 325
+N FR AN SR G ++T + E+ S++T
Sbjct: 174 ASDPIELLNTRPYIRFRSAVPLANLIDTELSRLG-VVTNDVAEIDTIGSIVT 224
>UniRef50_A1SL15 Cluster: Putative uncharacterized protein; n=1;
Nocardioides sp. JS614|Rep: Putative uncharacterized
protein - Nocardioides sp. (strain BAA-499 / JS614)
Length = 1342
Score = 33.5 bits (73), Expect = 2.6
Identities = 18/33 (54%), Positives = 22/33 (66%)
Frame = +1
Query: 331 LACVIAGAGIALIPRSMLESMPGHHQVEAWPLA 429
LACV+AG AL PR ML ++ G +EAWP A
Sbjct: 96 LACVLAGFAYALSPR-MLSTL-GQISIEAWPSA 126
>UniRef50_Q7NSP2 Cluster: Hydrogen peroxide-inducible genes
activator; n=25; Proteobacteria|Rep: Hydrogen
peroxide-inducible genes activator - Chromobacterium
violaceum
Length = 312
Score = 33.1 bits (72), Expect = 3.4
Identities = 13/56 (23%), Positives = 28/56 (50%)
Frame = +2
Query: 14 PKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGY 181
P + L + + + + G+++A + P T I+ P+Y E ++ TP+G+
Sbjct: 118 PDMPLILEENYTSRLAEMLKRGEVDAIIVADPFEETGIEAWPLYDEPFVVATPKGH 173
>UniRef50_Q46S95 Cluster: Regulatory protein, LysR:LysR,
substrate-binding; n=1; Ralstonia eutropha JMP134|Rep:
Regulatory protein, LysR:LysR, substrate-binding -
Ralstonia eutropha (strain JMP134) (Alcaligenes
eutrophus)
Length = 309
Score = 33.1 bits (72), Expect = 3.4
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 283 GAAPGTIHEMESYHGMLACVIAGAGIALIPRS 378
G P + +M H +LA V AG G+AL+P S
Sbjct: 217 GRPPRVVQQMSQTHSVLALVRAGLGLALVPAS 248
>UniRef50_Q2RHB2 Cluster: Transcriptional regulator, LysR family;
n=1; Moorella thermoacetica ATCC 39073|Rep:
Transcriptional regulator, LysR family - Moorella
thermoacetica (strain ATCC 39073)
Length = 297
Score = 33.1 bits (72), Expect = 3.4
Identities = 13/54 (24%), Positives = 32/54 (59%)
Frame = +2
Query: 5 RRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIV 166
R+YP ++ +L + ++ L+G+L+ A I+G H + ++++EL+++
Sbjct: 115 RQYPDVEITLRIANTQEIICRTLDGELDLALIEGQAKHPNLIQEDLFQDELVLI 168
>UniRef50_Q28P74 Cluster: Transcriptional regulator LysR family;
n=4; Rhodobacterales|Rep: Transcriptional regulator LysR
family - Jannaschia sp. (strain CCS1)
Length = 292
Score = 33.1 bits (72), Expect = 3.4
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +2
Query: 11 YPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAI 127
YP++ L+ SG++ D ++E +L+ F+ GPI+ ++
Sbjct: 116 YPRVNVDLTVDISGSLRDALVERRLDLVFLMGPISEFSV 154
>UniRef50_Q0LX02 Cluster: Regulatory protein, LysR:LysR,
substrate-binding; n=1; Caulobacter sp. K31|Rep:
Regulatory protein, LysR:LysR, substrate-binding -
Caulobacter sp. K31
Length = 327
Score = 33.1 bits (72), Expect = 3.4
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 5 RRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTP 172
+R+P + L S + GVL G+L+AAFI G + ++ E + + P
Sbjct: 135 KRFPSVDVKLEEASSQSNAAGVLSGRLDAAFISGAPELPGCETRCLWSERIFLALP 190
>UniRef50_A7MZ35 Cluster: Putative uncharacterized protein; n=1;
Vibrio harveyi ATCC BAA-1116|Rep: Putative
uncharacterized protein - Vibrio harveyi ATCC BAA-1116
Length = 309
Score = 33.1 bits (72), Expect = 3.4
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +1
Query: 313 ESYHGMLACVIAGAGIALIPRSMLESMPGHHQVE 414
+S H +++ V AGAG+ALIP M ES+ ++E
Sbjct: 229 DSVHSVISMVKAGAGMALIPEFMFESLRRKGELE 262
>UniRef50_A6UMN5 Cluster: Transcriptional regulator, LysR family;
n=1; Sinorhizobium medicae WSM419|Rep: Transcriptional
regulator, LysR family - Sinorhizobium medicae WSM419
Length = 296
Score = 33.1 bits (72), Expect = 3.4
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = +2
Query: 5 RRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYA 184
R YP + L+ + GV EG+L+ FI PI + V E L++ PQ +
Sbjct: 115 RSYPHVTVELADLRIPDQVRGVSEGRLDVGFIHPPIRGEQLAIETVLVEPLVVAVPQRHR 174
Query: 185 PVTRA 199
+RA
Sbjct: 175 LASRA 179
>UniRef50_A6Q1C4 Cluster: Transcriptional regulator, LysR family;
n=2; unclassified Epsilonproteobacteria|Rep:
Transcriptional regulator, LysR family - Nitratiruptor
sp. (strain SB155-2)
Length = 305
Score = 33.1 bits (72), Expect = 3.4
Identities = 15/54 (27%), Positives = 32/54 (59%)
Frame = +2
Query: 8 RYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVT 169
+YP+++ SL G + + + V G ++ +I+G I + P+ ++EL++VT
Sbjct: 116 QYPEVKISLKIGNTAEIREMVEGGDIDIGYIEGEIICPNCNTTPLGKDELVVVT 169
>UniRef50_A6C0K1 Cluster: Probable transcription regulator; n=1;
Planctomyces maris DSM 8797|Rep: Probable transcription
regulator - Planctomyces maris DSM 8797
Length = 329
Score = 33.1 bits (72), Expect = 3.4
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 238 QLFVSSHFESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIP 372
+L V + W G IHE ++ M V AGAGI+++P
Sbjct: 197 ELVVRQKIDRWLRKAGVHVQLIHEFDNIENMKRAVEAGAGISVLP 241
>UniRef50_A4C1K9 Cluster: Transcriptional regulator, LysR family
protein; n=14; Bacteroidetes|Rep: Transcriptional
regulator, LysR family protein - Polaribacter irgensii
23-P
Length = 342
Score = 33.1 bits (72), Expect = 3.4
Identities = 14/59 (23%), Positives = 32/59 (54%)
Frame = +2
Query: 5 RRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGY 181
++YPK++ + + ++ + +G ++AA P+ + AI P+Y E + + PQ +
Sbjct: 145 KKYPKVKLIIEELTTEEIVRKLTDGHIDAAIAATPLENEAIKEKPLYYEPFVALIPQNH 203
>UniRef50_A0Y4L8 Cluster: DNA-binding transcriptional dual
regulator; n=3; Alteromonadales|Rep: DNA-binding
transcriptional dual regulator - Alteromonadales
bacterium TW-7
Length = 301
Score = 33.1 bits (72), Expect = 3.4
Identities = 14/62 (22%), Positives = 31/62 (50%)
Frame = +1
Query: 229 LPRQLFVSSHFESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLESMPGHHQ 408
+P Q F E W+ + ++ + M++ V G G+A++P+ +L++ P +
Sbjct: 197 VPEQGFSRQRLEMWWRKNNIHGKIYAQVAGHEAMVSMVSLGFGVAMVPKIVLDNSPLKDK 256
Query: 409 VE 414
V+
Sbjct: 257 VQ 258
>UniRef50_O06703 Cluster: HTH-type transcriptional regulator bbuR;
n=1; Bordetella bronchiseptica|Rep: HTH-type
transcriptional regulator bbuR - Bordetella
bronchiseptica (Alcaligenes bronchisepticus)
Length = 325
Score = 33.1 bits (72), Expect = 3.4
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +2
Query: 5 RRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIV-TPQ 175
RR+PK+Q + S T+++ VL G+L A + P H + P+ E L +V PQ
Sbjct: 129 RRWPKLQVDVMEALSRTLVERVLHGELALAVLFDPPPHPDLICRPLLIERLCLVGNPQ 186
>UniRef50_Q6D6S9 Cluster: LysR-family transcriptional regulator;
n=15; Proteobacteria|Rep: LysR-family transcriptional
regulator - Erwinia carotovora subsp. atroseptica
(Pectobacterium atrosepticum)
Length = 302
Score = 32.7 bits (71), Expect = 4.5
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 262 ESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLES-MPGHHQVEAWPLAE 432
ES D A G +++ +A VIAG G+AL+PR +E+ + V WP ++
Sbjct: 205 ESGIRLDNPAQGVRYDLHEM--TIAAVIAGHGVALVPRMYVENELSCGMLVSPWPASD 260
>UniRef50_Q3W213 Cluster: Regulatory protein, LysR:LysR substrate
binding domain; n=1; Frankia sp. EAN1pec|Rep: Regulatory
protein, LysR:LysR substrate binding domain - Frankia
sp. EAN1pec
Length = 333
Score = 32.7 bits (71), Expect = 4.5
Identities = 14/55 (25%), Positives = 29/55 (52%)
Frame = +2
Query: 8 RYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTP 172
R P+ + L + +L+ + G L+ A + P + + +P+Y E+ ++VTP
Sbjct: 121 RRPEARLRLREAQTSALLEELRGGSLDLALLALPTDEPGVAELPLYDEDFVLVTP 175
>UniRef50_Q1YQ35 Cluster: Transcriptional regulator, LysR family
protein; n=2; Gammaproteobacteria|Rep: Transcriptional
regulator, LysR family protein - gamma proteobacterium
HTCC2207
Length = 293
Score = 32.7 bits (71), Expect = 4.5
Identities = 17/76 (22%), Positives = 39/76 (51%)
Frame = +2
Query: 8 RYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAP 187
R+P+ Q ++ S + V +++ I+G I H ++ IP +R++ ++V P
Sbjct: 116 RHPEAQVDINVANSSEVASQVANYEVDIGMIEGAIQHRDLELIP-WRQDQLVVFCSPSHP 174
Query: 188 VTRASQVNGSNIYAFR 235
+ + ++ ++I A R
Sbjct: 175 LAKKQRLTDADIVAAR 190
>UniRef50_Q0K190 Cluster: Transcriptional regulator, LysR-family;
n=1; Ralstonia eutropha H16|Rep: Transcriptional
regulator, LysR-family - Ralstonia eutropha (strain ATCC
17699 / H16 / DSM 428 / Stanier 337)(Cupriavidus necator
(strain ATCC 17699 / H16 / DSM 428 / Stanier337))
Length = 295
Score = 32.7 bits (71), Expect = 4.5
Identities = 14/63 (22%), Positives = 29/63 (46%)
Frame = +2
Query: 8 RYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAP 187
R+P + +++ S V++GKL+ + + + P++ E IV P+G+
Sbjct: 116 RFPGLHIAVTDMGSADQAHAVMQGKLDIGIVHSIPTRSGLGKTPIFTEYFTIVVPEGHEL 175
Query: 188 VTR 196
R
Sbjct: 176 AAR 178
>UniRef50_A5G0H6 Cluster: Transcriptional regulator, LysR family;
n=1; Acidiphilium cryptum JF-5|Rep: Transcriptional
regulator, LysR family - Acidiphilium cryptum (strain
JF-5)
Length = 303
Score = 32.7 bits (71), Expect = 4.5
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +2
Query: 11 YPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGP---INHTAIDGIPVYREELMIVTPQGY 181
YP I ++S G S + +LEG + F++GP + + P+ ++ L++V G+
Sbjct: 117 YPGIGLAVSIGNSAEVARAILEGDVELGFVEGPGDTLIQPRLAAEPIAQDRLVMVVAPGH 176
>UniRef50_A4LYP8 Cluster: Transcriptional regulator, LysR family;
n=3; Desulfuromonadales|Rep: Transcriptional regulator,
LysR family - Geobacter bemidjiensis Bem
Length = 326
Score = 32.7 bits (71), Expect = 4.5
Identities = 15/63 (23%), Positives = 27/63 (42%)
Frame = +1
Query: 223 LCLPRQLFVSSHFESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLESMPGH 402
L LP+ + W +P E+ ++A V G G+ ++P+ +LE P
Sbjct: 211 LVLPQTGLSRRRLDQWLKEHRISPNITSEVSGNEAIIAMVRLGCGVGIVPQLVLERSPFR 270
Query: 403 HQV 411
+V
Sbjct: 271 DEV 273
>UniRef50_A3YFM1 Cluster: Transcriptional regulator MetR; n=1;
Marinomonas sp. MED121|Rep: Transcriptional regulator
MetR - Marinomonas sp. MED121
Length = 311
Score = 32.7 bits (71), Expect = 4.5
Identities = 17/84 (20%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Frame = +2
Query: 2 NRRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQ-- 175
+ + PK++ L + + + G ++ G + I IP++++EL++VTP
Sbjct: 130 SHKAPKLKLQLVASATQNPITSLQHGSVDIVIAPGYLATPGIIPIPLFKDELVLVTPYDH 189
Query: 176 --GYAPVTRASQVNGSNIYAFRAN 241
+ P +A ++ Y + N
Sbjct: 190 PLSHKPFIQAQDLSQEKYYTYSQN 213
>UniRef50_A3M8B6 Cluster: Transcriptional regulators LysR family;
n=1; Acinetobacter baumannii ATCC 17978|Rep:
Transcriptional regulators LysR family - Acinetobacter
baumannii (strain ATCC 17978 / NCDC KC 755)
Length = 213
Score = 32.7 bits (71), Expect = 4.5
Identities = 19/82 (23%), Positives = 38/82 (46%)
Frame = +2
Query: 5 RRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYA 184
+RYPKI+ + G + +LE ++ F+ P D P+ + + + P GY
Sbjct: 35 QRYPKIEIYIDEGEDKEVAQWLLERRIEVGFLIMP--DERFDTFPLIEDRFVALIPSGY- 91
Query: 185 PVTRASQVNGSNIYAFRANCSY 250
P+ + ++ + + NCS+
Sbjct: 92 PLAQQLYIDPAQL----ENCSF 109
>UniRef50_A3K7Z5 Cluster: Regulatory protein, LysR:LysR,
substrate-binding; n=1; Sagittula stellata E-37|Rep:
Regulatory protein, LysR:LysR, substrate-binding -
Sagittula stellata E-37
Length = 333
Score = 32.7 bits (71), Expect = 4.5
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 292 PGTIHEMESYHGMLACVIAGAGIALIPRSM 381
P +HE+ H +L V AG GI+++P S+
Sbjct: 245 PNIVHEVSDTHTLLGLVAAGMGISMVPASV 274
>UniRef50_Q4KF30 Cluster: Transcriptional regulator, LysR family;
n=2; Proteobacteria|Rep: Transcriptional regulator, LysR
family - Pseudomonas fluorescens (strain Pf-5 / ATCC
BAA-477)
Length = 286
Score = 32.3 bits (70), Expect = 6.0
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +2
Query: 8 RYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELM---IVTPQG 178
RYP I+ + G GT+LD + +G N + G + TA G ++ E L+ +V P G
Sbjct: 115 RYPGIRLDVQVGIPGTLLDLLAQG--NLQLVVGSLCETAEPGRLLWSEPLVWAGLVQPAG 172
Query: 179 YAP 187
P
Sbjct: 173 LLP 175
>UniRef50_Q8KSM0 Cluster: OxyR; n=5; Neisseria|Rep: OxyR - Neisseria
gonorrhoeae
Length = 306
Score = 32.3 bits (70), Expect = 6.0
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = +2
Query: 5 RRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYA 184
R PK+ L + T+ + + G ++A + P I P+Y E ++ P+G++
Sbjct: 115 RTAPKMPLMLEENYTHTLTESLKRGDVDAIIVAEPFQEPGIVTEPLYDEPFFVIVPKGHS 174
>UniRef50_Q04GQ1 Cluster: Transcriptional regulator; n=2;
Lactobacillales|Rep: Transcriptional regulator -
Oenococcus oeni (strain BAA-331 / PSU-1)
Length = 297
Score = 32.3 bits (70), Expect = 6.0
Identities = 14/68 (20%), Positives = 33/68 (48%)
Frame = +2
Query: 8 RYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAP 187
+YP+++ ++ G + DGV G ++ F P++ + P+ ++ + V P + P
Sbjct: 116 QYPQVEVTVFQGNFNQIADGVSNGSIDIGFSSLPVDDKLLVE-PLIKDRIYCVAPSDFVP 174
Query: 188 VTRASQVN 211
+ + N
Sbjct: 175 KDKMNVTN 182
>UniRef50_Q01UV5 Cluster: LOR/SDH bifunctional enzyme conserved
domain protein; n=1; Solibacter usitatus Ellin6076|Rep:
LOR/SDH bifunctional enzyme conserved domain protein -
Solibacter usitatus (strain Ellin6076)
Length = 402
Score = 32.3 bits (70), Expect = 6.0
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 280 DGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLESMPGHHQVEAW 420
DG P TI +M A + GAG+ L SML S+ + + +W
Sbjct: 313 DGPLPDTITDMNEAQDAYAAQLKGAGLVLCLGSMLHSIATGNMLPSW 359
>UniRef50_A3TJH8 Cluster: Putative transcriptional regulator; n=1;
Janibacter sp. HTCC2649|Rep: Putative transcriptional
regulator - Janibacter sp. HTCC2649
Length = 313
Score = 32.3 bits (70), Expect = 6.0
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 283 GAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLESMPGHHQVEAWPL 426
G P +E E Y ++ + G G+A+IP +L+++ H V A P+
Sbjct: 220 GYVPNIAYETEDYVAVMGLIAEGLGVAVIPDLILKTV-HHEDVAALPM 266
>UniRef50_A1W235 Cluster: Transcriptional regulator, LysR family;
n=5; Burkholderiales|Rep: Transcriptional regulator,
LysR family - Acidovorax sp. (strain JS42)
Length = 309
Score = 32.3 bits (70), Expect = 6.0
Identities = 13/58 (22%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +2
Query: 5 RRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPI-NHTAIDGIPVYREELMIVTPQ 175
+RYP+I+ LS S +L+G++ + +A + P+ + + + +P+ R++ ++ +
Sbjct: 115 QRYPQIELELSEATSSEILEGLVSRRFDAGLLRYPVLDPSGFELLPLDRDDFVLAVAE 172
>UniRef50_Q9AUD2 Cluster: 11S globulin; n=6; Magnoliophyta|Rep: 11S
globulin - Sesamum indicum (Oriental sesame) (Gingelly)
Length = 497
Score = 32.3 bits (70), Expect = 6.0
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = +2
Query: 104 GPINHTAIDGIPVYREELMIVTPQGYAPVTRASQVNGSNIYAFRANCSYRPTSRAG 271
G + DG V RE +I+ PQ Y RASQ G +F+ N + + AG
Sbjct: 374 GHTGRSVFDG--VVREGQLIIVPQNYVVAKRASQDEGLEWISFKTNDNAMTSQLAG 427
>UniRef50_Q9WZU5 Cluster: S-layer-like array protein; n=2;
Thermotoga|Rep: S-layer-like array protein - Thermotoga
maritima
Length = 456
Score = 31.9 bits (69), Expect = 7.9
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +2
Query: 14 PKIQFSLSTGPSGTM--LDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVT 169
P Q SLS+ PSG L+GV +GK P N+T YREE +T
Sbjct: 244 PLAQLSLSSSPSGASVYLNGVYQGKTPLTLNLSPGNYTVTFRKEGYREETRNIT 297
>UniRef50_Q9KEL3 Cluster: Transcriptional regulator; n=1; Bacillus
halodurans|Rep: Transcriptional regulator - Bacillus
halodurans
Length = 283
Score = 31.9 bits (69), Expect = 7.9
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +1
Query: 262 ESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLESMPGHHQVEAWPLAEQ 435
E W +G + E+ S +L+ V AG L+PRS+L+ + + A+P+ E+
Sbjct: 196 EEWLQDEGGSLENYLEIHSLEILLSSVKAGLAATLLPRSVLKG--AYEDLYAFPIPEK 251
>UniRef50_Q7WNK0 Cluster: LysR-family transcriptional regulator;
n=1; Bordetella bronchiseptica|Rep: LysR-family
transcriptional regulator - Bordetella bronchiseptica
(Alcaligenes bronchisepticus)
Length = 299
Score = 31.9 bits (69), Expect = 7.9
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 277 ADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLES-MPG 399
A G P H++ + ++ACV G GI L+PR++ + +PG
Sbjct: 216 AAGFHPDIKHQVRHWLTVVACVSKGMGITLVPRALSRADLPG 257
>UniRef50_Q5YV73 Cluster: Putative transcriptional regulator; n=1;
Nocardia farcinica|Rep: Putative transcriptional
regulator - Nocardia farcinica
Length = 291
Score = 31.9 bits (69), Expect = 7.9
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +2
Query: 8 RYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTP 172
R+P++ L+ G S T+ D + G L+ AF+ T G PV+R+ L+ P
Sbjct: 115 RHPRVDLQLTVGLSRTIHDRLRRGDLDLAFVMRKPGET--HGEPVHRDRLVWAGP 167
>UniRef50_Q47P44 Cluster: Putative LysR-family transcriptional
regulator; n=1; Thermobifida fusca YX|Rep: Putative
LysR-family transcriptional regulator - Thermobifida
fusca (strain YX)
Length = 301
Score = 31.9 bits (69), Expect = 7.9
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = +1
Query: 304 HEMESYHGMLACVIAGAGIALIPRSMLESMPGH----HQVEAWPLA 429
+E Y LA + AG GI L+P ++L + P H HQ+ LA
Sbjct: 225 YETRDYEVTLALIRAGVGIGLVPATILRTHPEHQWHAHQLSGTDLA 270
>UniRef50_Q2SD63 Cluster: Transcriptional regulator; n=2;
Oceanospirillales|Rep: Transcriptional regulator -
Hahella chejuensis (strain KCTC 2396)
Length = 320
Score = 31.9 bits (69), Expect = 7.9
Identities = 17/76 (22%), Positives = 35/76 (46%)
Frame = +2
Query: 5 RRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYA 184
+RYP+++ + + +L + +G+ + I+GP H + P + L I G+
Sbjct: 131 KRYPEVEPDVQIHNTEAVLALLEKGRAHIGLIEGPALHPTLHIAPWLADRLAIFCAAGH- 189
Query: 185 PVTRASQVNGSNIYAF 232
P+TR + + F
Sbjct: 190 PLTRVGNIGAEALEQF 205
>UniRef50_Q2RLB0 Cluster: Transcriptional regulator, LysR family;
n=1; Moorella thermoacetica ATCC 39073|Rep:
Transcriptional regulator, LysR family - Moorella
thermoacetica (strain ATCC 39073)
Length = 297
Score = 31.9 bits (69), Expect = 7.9
Identities = 13/58 (22%), Positives = 28/58 (48%)
Frame = +2
Query: 8 RYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGY 181
+YP L G + +L+ ++ I+GP++ + V +EL+++ P G+
Sbjct: 115 KYPDANVKLLVGNREETIQKLLDKTIDIGLIEGPVDQPGLATRGVTEDELLLIVPAGW 172
>UniRef50_Q8GRA2 Cluster: Collagen binding protein; n=8;
Streptococcus pyogenes|Rep: Collagen binding protein -
Streptococcus pyogenes
Length = 757
Score = 31.9 bits (69), Expect = 7.9
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Frame = +2
Query: 20 IQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAPVTRA 199
I F + G T++DG N ++ P + A + EE ++T Q YA A
Sbjct: 360 ITFKVEAGKVYTIIDGKQIENPNKEIVE-PYSVEAYNDF----EEFSVLTTQNYAKFYYA 414
Query: 200 SQVNGSN--IYAFRANCSYRPTSRAGFMLTVP 289
NGS+ +Y F A+ P S G P
Sbjct: 415 KNKNGSSQVVYCFNADLKSPPDSEDGGKTMTP 446
>UniRef50_Q1EY43 Cluster: Regulatory protein, LysR:LysR,
substrate-binding; n=1; Clostridium oremlandii
OhILAs|Rep: Regulatory protein, LysR:LysR,
substrate-binding - Clostridium oremlandii OhILAs
Length = 295
Score = 31.9 bits (69), Expect = 7.9
Identities = 16/80 (20%), Positives = 36/80 (45%)
Frame = +2
Query: 14 PKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAPVT 193
P ++ + +L +L +L+ F+DGPI + + +EL+++T Q +
Sbjct: 115 PNVELVTYIESTAALLGKILNYELDGIFVDGPIKNEELVQEICIDDELVLITGQQLSDSQ 174
Query: 194 RASQVNGSNIYAFRANCSYR 253
+ +++ NC Y+
Sbjct: 175 NLELICKNDLIVASQNCIYK 194
>UniRef50_Q12CN1 Cluster: Transcriptional regulator, LysR family;
n=1; Polaromonas sp. JS666|Rep: Transcriptional
regulator, LysR family - Polaromonas sp. (strain JS666 /
ATCC BAA-500)
Length = 304
Score = 31.9 bits (69), Expect = 7.9
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 292 PGTIHEMESYHGMLACVIAGAGIALIPRSMLESMPG 399
P +H + S M+ V G G+AL+PR+ +E + G
Sbjct: 212 PKKVHAISSISAMVQLVQGGFGVALLPRAAVERLTG 247
>UniRef50_A6SW66 Cluster: Transcriptional regulator, LysR family;
n=1; Janthinobacterium sp. Marseille|Rep:
Transcriptional regulator, LysR family -
Janthinobacterium sp. (strain Marseille) (Minibacterium
massiliensis)
Length = 289
Score = 31.9 bits (69), Expect = 7.9
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 277 ADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLESMPGHHQVEAWP 423
A+G P + EM + +LA V + ++ ++++ MPG HQV P
Sbjct: 210 ANGITPRIVMEMNAIEPILATVRHSSLATILSANLVDEMPGLHQVPLTP 258
>UniRef50_A6E260 Cluster: Transcriptional regulator, LysR family
protein; n=2; Roseovarius|Rep: Transcriptional
regulator, LysR family protein - Roseovarius sp. TM1035
Length = 305
Score = 31.9 bits (69), Expect = 7.9
Identities = 15/67 (22%), Positives = 31/67 (46%)
Frame = +2
Query: 2 NRRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGY 181
++R+P I G + L + + KL+ F+ GP+ V + + + P+G+
Sbjct: 116 HQRHPGITVRPHHGVTAAQLQQLRDDKLDIGFVTGPVRQPGFRSRVVQTDRPICIVPEGH 175
Query: 182 APVTRAS 202
+R+S
Sbjct: 176 RLASRSS 182
>UniRef50_A4A328 Cluster: Transcriptional regulator, lysr family
protein; n=1; Blastopirellula marina DSM 3645|Rep:
Transcriptional regulator, lysr family protein -
Blastopirellula marina DSM 3645
Length = 301
Score = 31.9 bits (69), Expect = 7.9
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Frame = +2
Query: 5 RRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFI-DGPINHTAIDGIPVYREELMIVTPQGY 181
+++P + P G + VL+G+L+AAF+ + P+ +++ P+ E L ++ +
Sbjct: 113 QQHPAVWVRCVPSPIGELKRRVLDGQLDAAFVLEEPVVPGSLNVAPLRPEPLALIAAPSH 172
Query: 182 APV----TRASQVNGSNIYAFRANCSYR 253
V +A + G I C+YR
Sbjct: 173 PLVKKRRVQARDLAGEPILFTETGCTYR 200
>UniRef50_A3UQR4 Cluster: Transcriptional regulator, LysR family;
n=1; Vibrio splendidus 12B01|Rep: Transcriptional
regulator, LysR family - Vibrio splendidus 12B01
Length = 301
Score = 31.9 bits (69), Expect = 7.9
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = +2
Query: 11 YPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGY 181
YP I+ L S ++ + + +L+ FI GP+ + I P ++ L+ + P +
Sbjct: 121 YPLIRLELIHQFSADQIESLEKERLDFGFITGPLIYKGISSFPFQQDPLVAIVPDSH 177
>UniRef50_A3SLJ6 Cluster: Transcriptional regulator, LysR family
protein; n=1; Roseovarius nubinhibens ISM|Rep:
Transcriptional regulator, LysR family protein -
Roseovarius nubinhibens ISM
Length = 299
Score = 31.9 bits (69), Expect = 7.9
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 265 SWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLESMP 396
+W A G + + +S MLA V AG G+A++P + + P
Sbjct: 203 AWMRASGVEARCVAKTDSVLSMLAAVRAGTGVAILPCYLADPDP 246
>UniRef50_A1B2F6 Cluster: Transcriptional regulator, LysR family;
n=1; Paracoccus denitrificans PD1222|Rep:
Transcriptional regulator, LysR family - Paracoccus
denitrificans (strain Pd 1222)
Length = 310
Score = 31.9 bits (69), Expect = 7.9
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 8 RYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGP 109
R+P+++ L GPS +L G+ G L+A F P
Sbjct: 116 RFPELEVRLDRGPSSCVLSGIRNGYLDAGFYVEP 149
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 572,940,791
Number of Sequences: 1657284
Number of extensions: 12981994
Number of successful extensions: 32778
Number of sequences better than 10.0: 163
Number of HSP's better than 10.0 without gapping: 31353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32768
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28019067077
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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