Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0233
         (489 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    27   1.1  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    27   2.0  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    26   2.7  
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   8.1  
SPAC25B8.10 |||trans-aconitate 3-methyltransferase |Schizosaccha...    25   8.1  

>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 226 INVTAINLTGTGYWRIS 176
           +NVTA+NLT   YW ++
Sbjct: 522 LNVTAVNLTNHSYWNLA 538


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 113 NHTAIDGIPVYREELMIVTPQGYAPVTRASQVNGS 217
           NH  I+ IP+  + + +   QG++P+    +  GS
Sbjct: 398 NHEEINSIPLRNKNIFVPPSQGHSPLLEKIKKQGS 432


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 17  KIQFSLSTGPSGTMLDGVLEGKLN 88
           +IQ  L   P  T+ DG+L GKLN
Sbjct: 838 QIQSVLLKTPKNTIPDGILRGKLN 861


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = -3

Query: 178 SLWRDDHQFLAVYRYPVDGSMVNGSINKRRIQF---SLQYTIQHS 53
           ++W     FLA+Y +P     VN ++  R  ++   S+QY I  S
Sbjct: 30  AIWHRFISFLAIYLWPCIMGSVNLNLQDRENEYFFDSIQYIIYTS 74


>SPAC25B8.10 |||trans-aconitate 3-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 263 RAGFMLTVPLRELSMRWSLITECWPV*SQEQALR-LFRAL 379
           RAG  + +PL + S+   L  +C+   + E+A++ ++R L
Sbjct: 89  RAGSAMAIPLEDESVDLVLCAQCFHWFANEEAMKEIYRVL 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,224,316
Number of Sequences: 5004
Number of extensions: 48221
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)