Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0233
         (489 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0587 + 23452275-23453759                                         31   0.66 
04_04_0188 - 23433753-23436572                                         29   1.5  
12_02_0685 + 22044167-22045228,22045319-22045504,22045630-22045947     28   4.6  
05_03_0515 + 14930736-14932697                                         28   4.6  
08_02_0199 - 14160881-14161054,14161151-14161306,14161802-141619...    27   6.1  
04_03_0775 + 19462030-19462500,19462674-19462883                       27   8.1  
04_03_0198 - 12555866-12556382,12556584-12556822                       27   8.1  

>01_05_0587 + 23452275-23453759
          Length = 494

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 21/64 (32%), Positives = 30/64 (46%)
 Frame = +1

Query: 232 PRQLFVSSHFESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLESMPGHHQV 411
           P   F++ H      ADG    ++ +  + HG+   V  G G+    RS  ESM  H+ V
Sbjct: 112 PFDRFMAEHHPDAVVADGFFTWSV-DAAAEHGVPRLVFLGTGV--FARSCQESMVRHNPV 168

Query: 412 EAWP 423
           EA P
Sbjct: 169 EACP 172


>04_04_0188 - 23433753-23436572
          Length = 939

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
 Frame = -3

Query: 298 FPERHRQHETSSRSGTIRTIGAEGINVTAINLTGT--GYWRISLWRDDHQFLAVYRYPVD 125
           F E    HE  +  G +   G +  +V  + + G   G   ++  ++ H FL   ++PV+
Sbjct: 541 FAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVE 600

Query: 124 GSMVNGSINKRRIQFSLQYTIQ 59
           G++V+  ++      S+ Y ++
Sbjct: 601 GAVVSSLVDMYSGCGSMNYALK 622


>12_02_0685 + 22044167-22045228,22045319-22045504,22045630-22045947
          Length = 521

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -3

Query: 487 DVFSHHDARPARLLTNAIA 431
           D+FSHHD  PA LL  A A
Sbjct: 124 DLFSHHDLDPASLLAAAAA 142


>05_03_0515 + 14930736-14932697
          Length = 653

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -1

Query: 387 FQHRARNKRNACSCDHTGQHSVIRLHLMDSSRS 289
           F HR  N  +A SCD T +    R HLMD+ R+
Sbjct: 459 FLHRCMNPTSADSCDATRE----RRHLMDACRT 487


>08_02_0199 -
           14160881-14161054,14161151-14161306,14161802-14161921,
           14162046-14162143,14162969-14163041,14164472-14164619,
           14165108-14165232,14165611-14165652,14165757-14166074,
           14166633-14167559,14167584-14167852,14167946-14168255,
           14169281-14169465,14170795-14170901,14171320-14171486
          Length = 1072

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -1

Query: 399 PRHTFQHRARNKRNACSCDHTGQHSVIRLHLMDSSRSGTVSMKP 268
           P H ++  A    +A S    G+H++  + LMD+ R G + ++P
Sbjct: 35  PTHGYRRGAAALGSALSA-RRGRHTLCSVQLMDALRGGNLQVEP 77


>04_03_0775 + 19462030-19462500,19462674-19462883
          Length = 226

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 134 IPVYREELMIVTPQGYAPVTRASQVNGSNIYAF-RANCS-YRPTSRAGF 274
           +PV R E      Q + P+ + S+ NGS  Y   +A CS  R   + GF
Sbjct: 123 VPVRRLENKHYNQQQHNPLWQMSKANGSGFYILHKARCSEIREAHQRGF 171


>04_03_0198 - 12555866-12556382,12556584-12556822
          Length = 251

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +2

Query: 32  LSTGPSGTMLDGVLEGKLNAAFIDGPIN 115
           L + PSGT L  V+EG L+A FI    N
Sbjct: 104 LHSHPSGTELIYVVEGTLSAGFISSTSN 131


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,977,448
Number of Sequences: 37544
Number of extensions: 381134
Number of successful extensions: 877
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)