Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0233
(489 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013) 31 0.67
SB_59270| Best HMM Match : RVT_1 (HMM E-Value=7.8e-06) 29 1.6
SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 2.1
SB_55154| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_38937| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_36893| Best HMM Match : Fibrinogen_C (HMM E-Value=2.4e-24) 28 3.6
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.) 23 4.7
SB_20107| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_44108| Best HMM Match : Chorion_3 (HMM E-Value=0.81) 27 6.3
SB_37810| Best HMM Match : DUF548 (HMM E-Value=1.7) 27 8.3
SB_9680| Best HMM Match : Ank (HMM E-Value=4e-20) 27 8.3
SB_52794| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_50568| Best HMM Match : EGF (HMM E-Value=0) 27 8.3
SB_43217| Best HMM Match : NUMOD3 (HMM E-Value=0.56) 27 8.3
>SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1207
Score = 32.7 bits (71), Expect = 0.17
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +1
Query: 160 DRHATRICASNPCQSG*WQ*HLCLPRQLFVSSHFESWFHADGAAPGTIHEME 315
D + + C++NP + G H C+P + +++ F A PG + E+E
Sbjct: 553 DENGFKNCSANPSKGGNRLLHQCIPNKPLELQYYQLQFMRQSAIPGQVIEIE 604
>SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)
Length = 665
Score = 30.7 bits (66), Expect = 0.67
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -1
Query: 186 GAYPCGVTIISSSRYTGIPSMAVWLMGPS 100
G YP G T+I YTG P MGP+
Sbjct: 102 GGYPVGKTLIYPGAYTGFPGYPSAYMGPA 130
>SB_59270| Best HMM Match : RVT_1 (HMM E-Value=7.8e-06)
Length = 509
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 173 QGYAPVTRASQVNGSNIYAFRANCSYRPTSRAGFM 277
QG+ V ++ NG F A CSYRP A F+
Sbjct: 379 QGWGAVMADTKTNGRLNKQFDAYCSYRPDPEASFI 413
>SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2142
Score = 29.5 bits (63), Expect = 1.6
Identities = 11/48 (22%), Positives = 24/48 (50%)
Frame = -3
Query: 199 GTGYWRISLWRDDHQFLAVYRYPVDGSMVNGSINKRRIQFSLQYTIQH 56
G W+ ++W D H+F A +++ + K+R + + Y+ +H
Sbjct: 1928 GAALWKATIWSDFHKFEAQIYLERHMQLLSSYVKKQRQESEMPYSDKH 1975
>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4277
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3
Query: 309 DGVLSRNVGLCDRRSRHCAYSALY 380
DGV S+ GLCD RSR C + ++Y
Sbjct: 397 DGVQSK--GLCDVRSRSCQFESVY 418
>SB_55154| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 28.7 bits (61), Expect = 2.7
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -1
Query: 381 HRARNKRNACSCDHTGQHSVIRLHLMDSSRSGTVSMKPALEV 256
HR +R C+C H HS RL + R G +P L V
Sbjct: 185 HRKNQRRGGCTC-HVQGHSTSRLTHRKNQRRGVGDERPFLFV 225
>SB_38937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2085
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 274 HADGAAPGTIHEMESYHGMLACVIAGA 354
HA+GAAP M + H M A AGA
Sbjct: 449 HAEGAAPAPSPRMHAAHSMTAAGTAGA 475
>SB_36893| Best HMM Match : Fibrinogen_C (HMM E-Value=2.4e-24)
Length = 411
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 148 RGTDDRHATRICASNPCQSG 207
R T D T CASNPC++G
Sbjct: 138 RNTRDTRITMPCASNPCKNG 157
>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3287
Score = 23.4 bits (48), Expect(2) = 4.7
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +1
Query: 172 TRICASNPCQS 204
T +CAS+PCQ+
Sbjct: 1978 TNVCASSPCQN 1988
Score = 22.6 bits (46), Expect(2) = 4.7
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +1
Query: 181 CASNPCQSG 207
CASNPC +G
Sbjct: 2019 CASNPCNNG 2027
>SB_20107| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 353
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 6 VVIPKFSFHFPPALPALCWMVYWREN*MRRLLMDPLTILP 125
+V P+++ + PP + W R N + R DP T LP
Sbjct: 276 LVSPRWNHYCPPQIAKAAWNNVRRNNHITRPSHDPYTYLP 315
>SB_44108| Best HMM Match : Chorion_3 (HMM E-Value=0.81)
Length = 402
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +1
Query: 274 HADGAAPGTIHEMESYHGMLACVIAGA 354
HA+GAAP M H M A AGA
Sbjct: 347 HAEGAAPAPSPRMHPAHSMTAAGTAGA 373
>SB_37810| Best HMM Match : DUF548 (HMM E-Value=1.7)
Length = 282
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 274 HADGAAPGTIHEMESYHGMLACVIAGA 354
HA+GAAP + M + H M A A A
Sbjct: 227 HAEGAAPASSSRMHAAHSMTAAGTASA 253
>SB_9680| Best HMM Match : Ank (HMM E-Value=4e-20)
Length = 1243
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 134 IPVYREELMIVTPQGYAPVTRASQVNG 214
+P YR +LM+V QGY T + + G
Sbjct: 662 VPYYRMKLMVVGIQGYGKTTLLAALKG 688
>SB_52794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1408
Score = 27.1 bits (57), Expect = 8.3
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 61 GWCTGGKTECGVY*WTH*PYCHRRDTGIPRGTDDRHATRI--CASNPCQSG 207
G+C G T C + T+ C +P TD +T I CASNPC++G
Sbjct: 677 GFCDNGAT-CNNFNGTYNCTC------VPGYTDRNCSTDINECASNPCENG 720
Score = 27.1 bits (57), Expect = 8.3
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 61 GWCTGGKTECGVY*WTH*PYCHRRDTGIPRGTDDRHATRI--CASNPCQSG 207
G+C G T C + T+ C +P TD +T I CASNPC++G
Sbjct: 797 GFCDNGAT-CNNFNGTYNCTC------VPGYTDRNCSTDINECASNPCENG 840
>SB_50568| Best HMM Match : EGF (HMM E-Value=0)
Length = 792
Score = 27.1 bits (57), Expect = 8.3
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 61 GWCTGGKTECGVY*WTH*PYCHRRDTGIPRGTDDRHATRI--CASNPCQSG 207
G+C G T C + T+ C +P TD +T I CASNPC++G
Sbjct: 6 GFCDNGAT-CNNFNGTYNCTC------VPGYTDRNCSTDINECASNPCENG 49
Score = 27.1 bits (57), Expect = 8.3
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 61 GWCTGGKTECGVY*WTH*PYCHRRDTGIPRGTDDRHATRI--CASNPCQSG 207
G+C G T C + T+ C +P TD +T I CASNPC++G
Sbjct: 126 GFCDNGAT-CNNFNGTYNCTC------VPGYTDRNCSTDINECASNPCENG 169
>SB_43217| Best HMM Match : NUMOD3 (HMM E-Value=0.56)
Length = 311
Score = 27.1 bits (57), Expect = 8.3
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +1
Query: 235 RQLFVSSHFESWFHADGAAPGTIHEMESYHGMLACVIAGAGIALIPRSMLESMPGH 402
++ FV +H S A G A G + + G++ V GAG ++PR + + H
Sbjct: 169 KRAFVVTHAVSV--ASGIAAGALFQRRGVAGLVGVV--GAGAGVVPRGLTSKVAKH 220
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,748,641
Number of Sequences: 59808
Number of extensions: 407388
Number of successful extensions: 1038
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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