Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0233
(489 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132877-15|CAC70111.1| 628|Caenorhabditis elegans Hypothetical... 29 1.8
Z75540-6|CAN86598.1| 584|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z75540-3|CAD01084.1| 581|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z75540-2|CAA99848.1| 582|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z48045-8|CAI46557.1| 331|Caenorhabditis elegans Hypothetical pr... 27 5.5
AC084197-18|AAM44394.1| 546|Caenorhabditis elegans Hypothetical... 27 5.5
Z70035-4|CAA93864.2| 410|Caenorhabditis elegans Hypothetical pr... 27 9.7
U58755-14|AAB00703.1| 117|Caenorhabditis elegans Hypothetical p... 27 9.7
AL117200-4|CAB60584.1| 401|Caenorhabditis elegans Hypothetical ... 27 9.7
AC024757-6|AAF59453.2| 305|Caenorhabditis elegans Hypothetical ... 27 9.7
>AL132877-15|CAC70111.1| 628|Caenorhabditis elegans Hypothetical
protein Y105E8B.9 protein.
Length = 628
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -3
Query: 190 YWRISLWRDD-HQFLAVYRYPVDGSMVNGSINKRRIQFSLQY 68
YW ISLWR+ H+ + V Y D + G + + FS QY
Sbjct: 510 YWDISLWRETFHKPIIVTEYGADS--IPGLNQEPSVDFSEQY 549
>Z75540-6|CAN86598.1| 584|Caenorhabditis elegans Hypothetical
protein F37D6.2c protein.
Length = 584
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 140 VYREELMIVTPQGYAPVTRASQVNGSNIYAFRANCSYRPT 259
+Y+ M + Y P R+S+ N I + CSY PT
Sbjct: 140 IYKGHYMFEATESYEPSRRSSRYNTKKIEG-KFMCSYNPT 178
>Z75540-3|CAD01084.1| 581|Caenorhabditis elegans Hypothetical
protein F37D6.2b protein.
Length = 581
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 140 VYREELMIVTPQGYAPVTRASQVNGSNIYAFRANCSYRPT 259
+Y+ M + Y P R+S+ N I + CSY PT
Sbjct: 139 IYKGHYMFEATESYEPSRRSSRYNTKKIEG-KFMCSYNPT 177
>Z75540-2|CAA99848.1| 582|Caenorhabditis elegans Hypothetical
protein F37D6.2a protein.
Length = 582
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 140 VYREELMIVTPQGYAPVTRASQVNGSNIYAFRANCSYRPT 259
+Y+ M + Y P R+S+ N I + CSY PT
Sbjct: 140 IYKGHYMFEATESYEPSRRSSRYNTKKIEG-KFMCSYNPT 178
>Z48045-8|CAI46557.1| 331|Caenorhabditis elegans Hypothetical
protein C41C4.10 protein.
Length = 331
Score = 27.5 bits (58), Expect = 5.5
Identities = 21/77 (27%), Positives = 34/77 (44%)
Frame = +2
Query: 182 APVTRASQVNGSNIYAFRANCSYRPTSRAGFMLTVPLRELSMRWSLITECWPV*SQEQAL 361
A VT A ++G Y + S PT+R VPL S+ SL C E +
Sbjct: 159 AAVTAACSISGGLTYFIKKASSLPPTTRIIIQRFVPLPATSLASSLNVICMRWNELETGI 218
Query: 362 RLFRALCWKVCRGITRL 412
+++ KV G++++
Sbjct: 219 QVYEKDTGKVV-GVSKV 234
>AC084197-18|AAM44394.1| 546|Caenorhabditis elegans Hypothetical
protein Y73B6BL.4 protein.
Length = 546
Score = 27.5 bits (58), Expect = 5.5
Identities = 18/55 (32%), Positives = 23/55 (41%)
Frame = -3
Query: 352 LLRSHRPTFRDKTPSHG*FPERHRQHETSSRSGTIRTIGAEGINVTAINLTGTGY 188
LLR H T TP F + Q S+ G+ TI A G + + T GY
Sbjct: 15 LLRRHPSTIDGLTPERPFFSSSNTQGGASAPPGSSATISAPGASAATVP-TSYGY 68
>Z70035-4|CAA93864.2| 410|Caenorhabditis elegans Hypothetical
protein R09D1.4 protein.
Length = 410
Score = 26.6 bits (56), Expect = 9.7
Identities = 18/68 (26%), Positives = 29/68 (42%)
Frame = +2
Query: 35 STGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAPVTRASQVNG 214
STGP + G L+ KLN A D +A +E + +T + +T S +
Sbjct: 279 STGPLSPLYSGHLDKKLNVADADENSEESAYMSRKTVAKEKIRLTLPSWDTLTETSSMYN 338
Query: 215 SNIYAFRA 238
++ F A
Sbjct: 339 NSTKTFLA 346
>U58755-14|AAB00703.1| 117|Caenorhabditis elegans Hypothetical
protein C34D4.3 protein.
Length = 117
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -3
Query: 196 TGYWRISLWRDDHQ 155
T WR+ LWRDDHQ
Sbjct: 101 TANWRV-LWRDDHQ 113
>AL117200-4|CAB60584.1| 401|Caenorhabditis elegans Hypothetical
protein Y50E8A.7 protein.
Length = 401
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -3
Query: 256 GTIRTIGAE-GINVTAINLTGTGYWRISLWRDDH 158
G IR G E G+N T+ + G +W SL+ H
Sbjct: 108 GNIR--GTEYGLNHTSFSTNGVNFWNFSLYEHSH 139
>AC024757-6|AAF59453.2| 305|Caenorhabditis elegans Hypothetical
protein Y37E11AL.3a protein.
Length = 305
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 346 RSHRPTFRDKTPSHG*FPERHRQHETSSRSGT 251
RS+ PT R T HG + E H++ ++ S+ T
Sbjct: 3 RSNEPTKRKSTTGHGDYAE-HKKRKSMSKEAT 33
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,638,268
Number of Sequences: 27780
Number of extensions: 287951
Number of successful extensions: 615
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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