Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0233
         (489 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   0.76 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   3.1  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   4.0  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   9.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   9.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   9.3  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 24.2 bits (50), Expect = 0.76
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 5   RRYPKIQFSLSTGPSGTMLDGVLEGKLN 88
           +RY +++ S  T PS +    VLEG  N
Sbjct: 186 QRYKQVEISQMTEPSSSTKSYVLEGPRN 213


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 109 H*PYCHRRDTGIPRGTDDRHATR 177
           H  Y   R T  PR TD RH  R
Sbjct: 156 HPRYKRPRTTFEPRATDSRHYDR 178


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 171 GVTIISSSRYTGIPS 127
           G+T ++  RY G+PS
Sbjct: 78  GMTFVTVPRYKGVPS 92


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 11/54 (20%), Positives = 22/54 (40%)
 Frame = +2

Query: 74  EGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAPVTRASQVNGSNIYAFR 235
           +G+LN    D P+   AI+ I   +  +  V       + ++  +   N Y  +
Sbjct: 187 QGRLNIFPFDDPLCSFAIESISYEQTAITYVWKNDEGTLRKSPSLTSLNAYLIK 240


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 11/54 (20%), Positives = 22/54 (40%)
 Frame = +2

Query: 74  EGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAPVTRASQVNGSNIYAFR 235
           +G+LN    D P+   AI+ I   +  +  V       + ++  +   N Y  +
Sbjct: 187 QGRLNIFPFDDPLCSFAIESISYEQTAITYVWKNDEGTLRKSPSLTSLNAYLIK 240


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 11/54 (20%), Positives = 22/54 (40%)
 Frame = +2

Query: 74  EGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAPVTRASQVNGSNIYAFR 235
           +G+LN    D P+   AI+ I   +  +  V       + ++  +   N Y  +
Sbjct: 238 QGRLNIFPFDDPLCSFAIESISYEQTAITYVWKNDEGTLRKSPSLTSLNAYLIK 291


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 11/54 (20%), Positives = 22/54 (40%)
 Frame = +2

Query: 74  EGKLNAAFIDGPINHTAIDGIPVYREELMIVTPQGYAPVTRASQVNGSNIYAFR 235
           +G+LN    D P+   AI+ I   +  +  V       + ++  +   N Y  +
Sbjct: 187 QGRLNIFPFDDPLCSFAIESISYEQTAITYVWKNDEGTLRKSPSLTSLNAYLIK 240


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,806
Number of Sequences: 438
Number of extensions: 3767
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)