Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0233
         (489 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14040.1 68418.m01642 mitochondrial phosphate transporter ide...    28   2.9  
At4g33350.1 68417.m04741 chloroplast inner membrane import prote...    28   3.9  
At5g20410.1 68418.m02427 1,2-diacylglycerol 3-beta-galactosyltra...    27   5.1  
At5g04060.1 68418.m00387 dehydration-responsive protein-related ...    27   9.0  
At4g05330.1 68417.m00815 zinc finger and C2 domain protein, puta...    27   9.0  
At1g70610.1 68414.m08135 ABC transporter (TAP1) contains Pfam pr...    27   9.0  

>At5g14040.1 68418.m01642 mitochondrial phosphate transporter
           identical to mitochondrial phosphate transporter
           GI:3318617 from [Arabidopsis thaliana]
          Length = 375

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 2   NRRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGP 109
           N   P   +S S+ P   +LD VL    NAAF   P
Sbjct: 6   NSLIPSFLYSSSSSPRSFLLDQVLNSNSNAAFEKSP 41


>At4g33350.1 68417.m04741 chloroplast inner membrane import protein
           Tic22, putative similar to Tic22 [Pisum sativum]
           gi|3769671|gb|AAC64606
          Length = 268

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +2

Query: 86  NAAFIDGPINHTAIDGIPVYREELMIVTPQG--YAPV 190
           NA  +    N    DG+PV++ EL++V  +   Y PV
Sbjct: 165 NALELKSSGNKNGFDGVPVFQSELLVVRKKNRRYCPV 201


>At5g20410.1 68418.m02427 1,2-diacylglycerol
           3-beta-galactosyltransferase, putative /
           monogalactosyldiacylglycerol synthase, putative / MGDG
           synthase, putative identical to
           monogalactosyldiacylglycerol synthase [gi:3367638] from
           Arabidopsis thaliana, similar to MGDG synthase type A
           [gi:9884651] from Glycine max
          Length = 468

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 307 EMESYHGMLACVIAGAGIALIPRSMLESMP 396
           +ME + G   C+I  AG   I  S++ S+P
Sbjct: 343 QMEKWMGACDCIITKAGPGTIAESLIRSLP 372


>At5g04060.1 68418.m00387 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 600

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 264 ELVSC*RCRSGNYP*DGVLSRNVGLCDRRSRHCAYSA 374
           ++V C RCR   +  DGVL + V    R + +  YSA
Sbjct: 279 DMVHCSRCRVDWHENDGVLMKEVNRLLRPNGYFVYSA 315


>At4g05330.1 68417.m00815 zinc finger and C2 domain protein,
           putative similar to zinc finger and C2 domain protein
           GI:9957238 from [Arabidopsis thaliana]
          Length = 336

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 137 PVYREELMIVTPQGYAPV 190
           PV+ +ELM+  P+ Y PV
Sbjct: 224 PVWNQELMLSVPESYGPV 241


>At1g70610.1 68414.m08135 ABC transporter (TAP1) contains Pfam
           profile: PF00005 ABC transporters; similar to TAP1
           protein (transporter of processed antigen) GB:AAD53033
           (Oncorhynchus mykiss); identical to cDNA transporter
           associated with antigen processing-like protein (TAP1)
           GI:19335721
          Length = 700

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 18/73 (24%), Positives = 31/73 (42%)
 Frame = +2

Query: 95  FIDGPINHTAIDGIPVYREELMIVTPQGYAPVTRASQVNGSNIYAFRANCSYRPTSRAGF 274
           F+D   ++ + D + V +   + V P     +   S    S +        Y PTS    
Sbjct: 457 FVDVSFSYPSRDEVAVVQNVNISVHPGEVVAIVGLSGSGKSTLVNLLLQL-YEPTSGQIL 515

Query: 275 MLTVPLRELSMRW 313
           +  VPL+EL ++W
Sbjct: 516 LDGVPLKELDVKW 528


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,028,691
Number of Sequences: 28952
Number of extensions: 270246
Number of successful extensions: 567
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)